VIRsiRNAdb

Predicted off-targets seeds for siRNA "cccuaucuuaucaacacuuccggaa" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1299.
Total Genes with multiple seed matches: 94.
Genes with at least one seed match: NM_000071 NM_000077 NM_000138 NM_000142 NM_000192 NM_000209 NM_000210 NM_000234 NM_000268 NM_000332 NM_000368 NM_000438 NM_000455 NM_000456 NM_000479 NM_000503 NM_000507 NM_000527 NM_000546 NM_000560 NM_000598 NM_000599 NM_000602 NM_000702 NM_000739 NM_000742 NM_000747 NM_000795 NM_000809 NM_000843 NM_000875 NM_000896 NM_000897 NM_000899 NM_000918 NM_000924 NM_000933 NM_000951 NM_000954 NM_001001188 NM_001001344 NM_001001560 NM_001001685 NM_001001791 NM_001001795 NM_001001852 NM_001001928 NM_001001929 NM_001001930 NM_001002021 NM_001002916 NM_001003399 NM_001003407 NM_001003408 NM_001003796 NM_001004106 NM_001004128 NM_001004285 NM_001004286 NM_001004326 NM_001004342 NM_001004355 NM_001004356 NM_001004358 NM_001005303 NM_001005387 NM_001005405 NM_001005408 NM_001005415 NM_001005416 NM_001005526 NM_001005737 NM_001005766 NM_001005783 NM_001006626 NM_001006627 NM_001006628 NM_001006629 NM_001006630 NM_001006631 NM_001006632 NM_001006667 NM_001007271 NM_001007274 NM_001007275 NM_001007535 NM_001007565 NM_001007595 NM_001008223 NM_001008228 NM_001008229 NM_001008701 NM_001009553 NM_001009820 NM_001009880 NM_001010850 NM_001010866 NM_001010867 NM_001010903 NM_001010925 NM_001010926 NM_001011656 NM_001012278 NM_001012651 NM_001012707 NM_001012710 NM_001012717 NM_001012987 NM_001012989 NM_001013398 NM_001013404 NM_001013627 NM_001013633 NM_001013640 NM_001013652 NM_001013675 NM_001013678 NM_001013685 NM_001013710 NM_001014440 NM_001014842 NM_001017440 NM_001017916 NM_001017917 NM_001017918 NM_001017967 NM_001018058 NM_001018095 NM_001018099 NM_001023565 NM_001024455 NM_001024598 NM_001024608 NM_001024649 NM_001024669 NM_001024670 NM_001024683 NM_001024736 NM_001024843 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001025234 NM_001025235 NM_001025236 NM_001025237 NM_001025238 NM_001025239 NM_001025242 NM_001025243 NM_001049 NM_001082 NM_001116 NM_001119 NM_001146 NM_001149 NM_001156 NM_001167 NM_001189 NM_001190 NM_001204 NM_001265 NM_001383 NM_001396 NM_001424 NM_001426 NM_001440 NM_001467 NM_001494 NM_001532 NM_001562 NM_001567 NM_001569 NM_001631 NM_001669 NM_001699 NM_001706 NM_001715 NM_001746 NM_001915 NM_001955 NM_001961 NM_001962 NM_001969 NM_002020 NM_002048 NM_002065 NM_002082 NM_002103 NM_002105 NM_002111 NM_002143 NM_002189 NM_002199 NM_002212 NM_002313 NM_002319 NM_002385 NM_002433 NM_002437 NM_002439 NM_002475 NM_002504 NM_002531 NM_002556 NM_002558 NM_002561 NM_002586 NM_002613 NM_002626 NM_002653 NM_002699 NM_002707 NM_002716 NM_002719 NM_002745 NM_002773 NM_002826 NM_002840 NM_002848 NM_002942 NM_002971 NM_002975 NM_003003 NM_003025 NM_003045 NM_003048 NM_003061 NM_003063 NM_003107 NM_003108 NM_003119 NM_003141 NM_003152 NM_003161 NM_003190 NM_003221 NM_003224 NM_003254 NM_003271 NM_003281 NM_003307 NM_003325 NM_003328 NM_003342 NM_003392 NM_003565 NM_003598 NM_003612 NM_003648 NM_003665 NM_003681 NM_003684 NM_003715 NM_003749 NM_003759 NM_003764 NM_003800 NM_003815 NM_003834 NM_003842 NM_003852 NM_003929 NM_003946 NM_003955 NM_003959 NM_003985 NM_003994 NM_004034 NM_004051 NM_004065 NM_004077 NM_004113 NM_004118 NM_004145 NM_004209 NM_004286 NM_004295 NM_004321 NM_004335 NM_004359 NM_004395 NM_004438 NM_004508 NM_004562 NM_004565 NM_004566 NM_004567 NM_004573 NM_004590 NM_004624 NM_004700 NM_004711 NM_004712 NM_004729 NM_004732 NM_004734 NM_004736 NM_004739 NM_004747 NM_004762 NM_004778 NM_004796 NM_004923 NM_004992 NM_005008 NM_005030 NM_005036 NM_005063 NM_005080 NM_005094 NM_005140 NM_005148 NM_005170 NM_005178 NM_005244 NM_005252 NM_005253 NM_005270 NM_005276 NM_005385 NM_005393 NM_005398 NM_005479 NM_005509 NM_005512 NM_005519 NM_005521 NM_005524 NM_005539 NM_005576 NM_005583 NM_005597 NM_005598 NM_005599 NM_005619 NM_005668 NM_005688 NM_005729 NM_005860 NM_005895 NM_005896 NM_005898 NM_005928 NM_005946 NM_005986 NM_005994 NM_006032 NM_006057 NM_006070 NM_006096 NM_006114 NM_006202 NM_006237 NM_006262 NM_006320 NM_006339 NM_006388 NM_006449 NM_006454 NM_006466 NM_006500 NM_006509 NM_006541 NM_006546 NM_006586 NM_006606 NM_006608 NM_006620 NM_006629 NM_006651 NM_006675 NM_006690 NM_006707 NM_006720 NM_006731 NM_006732 NM_006738 NM_006796 NM_006814 NM_006825 NM_006826 NM_006838 NM_006930 NM_006943 NM_007011 NM_007028 NM_007050 NM_007077 NM_007079 NM_007129 NM_007189 NM_007200 NM_007203 NM_007261 NM_007335 NM_007336 NM_007338 NM_007345 NM_007346 NM_007353 NM_009588 NM_012072 NM_012088 NM_012120 NM_012146 NM_012184 NM_012213 NM_012218 NM_012219 NM_012252 NM_012264 NM_012306 NM_012309 NM_012408 NM_012436 NM_012455 NM_012473 NM_013231 NM_013251 NM_013284 NM_013365 NM_013382 NM_013385 NM_013397 NM_013401 NM_013432 NM_013433 NM_013958 NM_013959 NM_013962 NM_013987 NM_013988 NM_014030 NM_014057 NM_014149 NM_014183 NM_014189 NM_014190 NM_014207 NM_014212 NM_014252 NM_014278 NM_014286 NM_014289 NM_014352 NM_014360 NM_014369 NM_014405 NM_014520 NM_014554 NM_014556 NM_014571 NM_014603 NM_014614 NM_014656 NM_014661 NM_014711 NM_014728 NM_014741 NM_014746 NM_014747 NM_014771 NM_014787 NM_014792 NM_014801 NM_014824 NM_014829 NM_014837 NM_014844 NM_014848 NM_014851 NM_014862 NM_014900 NM_014909 NM_014921 NM_014922 NM_014959 NM_014974 NM_014988 NM_015002 NM_015005 NM_015033 NM_015066 NM_015075 NM_015088 NM_015094 NM_015099 NM_015144 NM_015166 NM_015193 NM_015205 NM_015246 NM_015257 NM_015264 NM_015299 NM_015326 NM_015330 NM_015347 NM_015349 NM_015353 NM_015417 NM_015438 NM_015453 NM_015493 NM_015557 NM_015568 NM_015577 NM_015633 NM_015642 NM_015683 NM_015833 NM_015834 NM_015891 NM_015905 NM_015995 NM_016072 NM_016084 NM_016122 NM_016138 NM_016147 NM_016206 NM_016418 NM_016488 NM_016496 NM_016525 NM_016526 NM_016527 NM_016561 NM_016574 NM_016611 NM_016617 NM_017450 NM_017456 NM_017495 NM_017519 NM_017527 NM_017550 NM_017586 NM_017590 NM_017607 NM_017658 NM_017723 NM_017728 NM_017729 NM_017787 NM_017793 NM_017811 NM_017849 NM_017891 NM_017905 NM_017938 NM_017957 NM_017968 NM_017979 NM_018059 NM_018083 NM_018108 NM_018153 NM_018178 NM_018198 NM_018201 NM_018206 NM_018210 NM_018214 NM_018231 NM_018241 NM_018243 NM_018268 NM_018276 NM_018292 NM_018316 NM_018382 NM_018404 NM_018482 NM_018579 NM_018667 NM_018706 NM_018728 NM_018945 NM_018992 NM_018999 NM_019001 NM_019009 NM_019011 NM_019035 NM_019036 NM_019043 NM_019098 NM_019107 NM_019594 NM_019885 NM_020037 NM_020038 NM_020141 NM_020162 NM_020184 NM_020208 NM_020213 NM_020223 NM_020247 NM_020310 NM_020335 NM_020338 NM_020359 NM_020362 NM_020406 NM_020415 NM_020423 NM_020676 NM_020695 NM_020697 NM_020708 NM_020731 NM_020732 NM_020761 NM_020764 NM_020792 NM_020800 NM_020807 NM_020851 NM_020870 NM_020896 NM_020954 NM_020956 NM_020987 NM_021032 NM_021038 NM_021076 NM_021078 NM_021079 NM_021093 NM_021116 NM_021149 NM_021164 NM_021174 NM_021195 NM_021198 NM_021224 NM_021255 NM_021612 NM_021638 NM_021817 NM_021913 NM_021923 NM_021949 NM_021958 NM_021961 NM_021967 NM_021973 NM_022042 NM_022063 NM_022081 NM_022112 NM_022114 NM_022137 NM_022169 NM_022341 NM_022361 NM_022363 NM_022369 NM_022405 NM_022445 NM_022473 NM_022479 NM_022566 NM_022725 NM_022759 NM_022833 NM_022842 NM_022965 NM_022978 NM_023067 NM_023926 NM_024019 NM_024035 NM_024052 NM_024323 NM_024416 NM_024492 NM_024512 NM_024545 NM_024591 NM_024614 NM_024638 NM_024649 NM_024650 NM_024701 NM_024723 NM_024731 NM_024736 NM_024750 NM_024787 NM_024809 NM_024893 NM_024910 NM_024933 NM_024938 NM_025002 NM_025078 NM_025138 NM_025168 NM_025240 NM_030379 NM_030380 NM_030381 NM_030622 NM_030628 NM_030640 NM_030645 NM_030665 NM_030667 NM_030668 NM_030669 NM_030670 NM_030671 NM_030751 NM_030776 NM_030885 NM_030964 NM_030965 NM_031265 NM_031268 NM_031416 NM_031427 NM_031434 NM_031462 NM_031468 NM_031912 NM_032019 NM_032042 NM_032109 NM_032174 NM_032179 NM_032189 NM_032271 NM_032285 NM_032287 NM_032294 NM_032296 NM_032329 NM_032342 NM_032354 NM_032366 NM_032382 NM_032429 NM_032430 NM_032442 NM_032484 NM_032499 NM_032510 NM_032515 NM_032529 NM_032538 NM_032556 NM_032574 NM_032607 NM_032611 NM_032663 NM_032683 NM_032740 NM_032853 NM_032854 NM_032868 NM_032900 NM_032932 NM_033004 NM_033006 NM_033007 NM_033014 NM_033170 NM_033171 NM_033172 NM_033173 NM_033199 NM_033259 NM_033274 NM_033331 NM_033346 NM_033542 NM_033624 NM_033626 NM_033658 NM_033659 NM_052816 NM_052838 NM_052846 NM_052849 NM_052910 NM_052988 NM_053017 NM_053044 NM_053052 NM_053056 NM_053286 NM_054035 NM_057179 NM_058167 NM_058182 NM_058195 NM_058197 NM_058237 NM_058243 NM_058246 NM_080422 NM_080423 NM_080473 NM_080552 NM_080612 NM_080659 NM_080670 NM_080717 NM_080730 NM_080731 NM_080738 NM_080789 NM_080790 NM_080861 NM_080881 NM_101395 NM_130436 NM_130437 NM_130438 NM_130440 NM_130845 NM_133170 NM_133175 NM_133176 NM_133180 NM_133328 NM_133371 NM_133373 NM_133452 NM_133627 NM_133628 NM_133630 NM_133632 NM_138293 NM_138300 NM_138350 NM_138372 NM_138401 NM_138422 NM_138465 NM_138468 NM_138813 NM_138931 NM_138970 NM_139021 NM_139024 NM_139202 NM_139204 NM_144623 NM_144640 NM_144691 NM_144692 NM_144767 NM_144994 NM_145039 NM_145068 NM_145113 NM_145179 NM_145185 NM_145187 NM_145188 NM_145189 NM_145190 NM_145230 NM_145248 NM_145271 NM_145275 NM_145277 NM_145285 NM_145638 NM_145691 NM_145727 NM_145751 NM_145799 NM_145808 NM_145861 NM_145895 NM_147131 NM_147132 NM_147187 NM_148961 NM_152237 NM_152272 NM_152308 NM_152371 NM_152378 NM_152380 NM_152418 NM_152429 NM_152451 NM_152536 NM_152569 NM_152619 NM_152655 NM_152744 NM_152750 NM_152840 NM_152841 NM_152842 NM_152870 NM_152879 NM_152906 NM_152924 NM_153008 NM_153029 NM_153031 NM_153033 NM_153217 NM_153233 NM_153244 NM_153328 NM_153367 NM_153370 NM_153375 NM_153451 NM_153480 NM_153481 NM_153482 NM_153483 NM_153717 NM_170665 NM_170719 NM_171982 NM_172058 NM_172059 NM_172060 NM_172110 NM_172111 NM_172112 NM_172113 NM_172163 NM_172200 NM_172206 NM_172364 NM_173156 NM_173161 NM_173353 NM_173354 NM_173452 NM_173475 NM_173476 NM_173477 NM_173492 NM_173501 NM_173540 NM_173547 NM_173570 NM_173597 NM_173610 NM_173617 NM_173626 NM_173633 NM_173644 NM_173669 NM_173795 NM_174869 NM_174892 NM_174917 NM_175056 NM_175068 NM_175080 NM_175863 NM_175895 NM_175898 NM_175923 NM_176677 NM_176792 NM_176801 NM_176820 NM_177427 NM_177442 NM_177953 NM_177963 NM_177967 NM_177978 NM_177979 NM_177983 NM_177999 NM_178004 NM_178013 NM_178120 NM_178232 NM_178448 NM_178449 NM_178500 NM_178578 NM_178579 NM_178586 NM_178838 NM_178861 NM_181355 NM_181425 NM_181466 NM_181467 NM_181468 NM_181469 NM_181486 NM_181512 NM_181572 NM_181688 NM_181714 NM_181715 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182507 NM_182510 NM_182511 NM_182562 NM_182584 NM_182595 NM_182620 NM_182682 NM_182700 NM_182709 NM_182710 NM_182797 NM_182812 NM_182924 NM_182970 NM_182975 NM_183004 NM_183010 NM_183047 NM_183048 NM_183065 NM_183337 NM_183425 NM_194286 NM_194289 NM_194290 NM_194312 NM_194315 NM_194316 NM_194352 NM_194449 NM_194457 NM_194458 NM_197975 NM_198074 NM_198213 NM_198324 NM_198427 NM_198445 NM_198447 NM_198449 NM_198452 NM_198493 NM_198502 NM_198545 NM_198547 NM_198580 NM_198595 NM_198686 NM_198688 NM_198859 NM_198956 NM_199126 NM_199131 NM_199205 NM_199262 NM_199349 NM_199454 NM_199461 NM_201520 NM_201565 NM_201568 NM_201569 NM_202004 NM_203305 NM_203314 NM_203315 NM_203347 NM_203353 NM_203403 NM_203422 NM_203445 NM_203481 NM_205767 NM_205843 NM_206809 NM_206810 NM_206811 NM_206812 NM_206813 NM_206814 NM_206824 NM_206834 NM_206835 NM_206900 NM_206901 NM_206902 NM_207111 NM_207116 NM_207126 NM_207129 NM_207191 NM_207194 NM_207195 NM_207196 NM_207197 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207306 NM_207322 NM_207324 NM_207349 NM_207368 NM_207379 NM_207380 NM_207381 NM_207401 NM_207405 NM_207419 NM_207449 NM_207462 NM_207470 NM_207473 NM_207484 NM_207491 NM_207514 NM_212464 NM_212467 NM_213566 NM_213596 NM_213613 NM_213652 NM_213653 XM_032996 XM_037557 XM_040592 XM_042833 XM_047610 XM_056455 XM_058931 XM_064190 XM_084529 XM_085463 XM_087762 XM_088686 XM_097977 XM_114303 XM_171855 XM_172874 XM_208204 XM_208313 XM_209655 XM_209753 XM_210048 XM_211764 XM_290734 XM_291262 XM_295155 XM_370639 XM_370756 XM_370878 XM_371082 XM_371179 XM_371359 XM_371488 XM_371741 XM_371755 XM_371759 XM_371783 XM_372019 XM_372028 XM_372030 XM_372090 XM_372452 XM_373500 XM_373561 XM_373737 XM_373831 XM_373845 XM_374035 XM_374093 XM_374112 XM_374769 XM_375697 XM_376212 XM_376350 XM_376550 XM_376558 XM_376680 XM_377041 XM_378202 XM_378240 XM_378346 XM_378358 XM_378360 XM_378367 XM_378368 XM_378394 XM_378399 XM_378419 XM_378462 XM_378516 XM_378546 XM_378549 XM_378655 XM_378730 XM_378746 XM_378756 XM_378860 XM_378876 XM_378914 XM_378947 XM_378970 XM_379023 XM_379030 XM_379089 XM_379215 XM_379306 XM_379309 XM_379363 XM_379454 XM_379459 XM_379595 XM_379622 XM_379623 XM_379637 XM_379648 XM_379934 XM_495888 XM_495918 XM_495920 XM_496239 XM_496335 XM_496351 XM_496635 XM_496690 XM_496692 XM_496844 XM_496849 XM_496877 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496960 XM_497002 XM_497080 XM_497124 XM_498452 XM_498467 XM_498488 XM_498555 XM_498557 XM_498563 XM_498572 XM_498612 XM_498653 XM_498739 XM_498751 XM_498835 XM_498841 XM_498904 XM_498917 XM_498928 XM_498933 XM_498986 XM_498991 XM_499029 XM_499046 XM_499092 XM_499093 XM_499164 XM_499257 XM_499501 XM_499597 XR_000182 XR_000184 XR_000190 XR_000194 XR_000256 XR_000261 XR_000268 XR_000272 XR_000292 XR_000294	Genes with multiple seed matches: NM_000210 NM_000599 NM_001003399 NM_001004356 NM_001004358 NM_001008223 NM_001009880 NM_001013404 NM_001017916 NM_001017917 NM_001017918 NM_001024608 NM_001204 NM_001915 NM_002561 NM_002653 NM_003045 NM_003681 NM_005148 NM_005253 NM_005539 NM_005860 NM_006606 NM_006675 NM_006943 NM_007129 NM_007335 NM_007336 NM_007338 NM_013231 NM_013397 NM_013433 NM_014286 NM_014556 NM_014801 NM_014829 NM_014988 NM_015166 NM_015264 NM_016525 NM_017793 NM_017849 NM_018579 NM_020695 NM_020708 NM_020851 NM_021174 NM_021923 NM_022114 NM_024893 NM_031265 NM_031462 NM_031912 NM_032430 NM_032499 NM_033346 NM_054035 NM_080789 NM_080790 NM_138372 NM_139202 NM_145275 NM_153031 NM_153328 NM_153717 NM_173617 NM_175056 NM_175080 NM_175898 NM_175923 NM_178004 NM_178120 NM_178448 NM_178579 NM_181826 NM_181827 NM_182510 NM_182584 NM_198452 NM_199131 NM_199205 NM_199262 NM_199454 NM_203305 NM_206902 NM_207324 NM_207380 XM_372028 XM_372030 XM_498751 XM_498917 XM_498933 XM_499164 XR_000256

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA