VIRsiRNAdb

Predicted off-targets seeds for siRNA "uucaccucugcacgucgca" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :382.
Total Genes with multiple seed matches: 15.
Genes with at least one seed match: NM_000160 NM_000334 NM_000455 NM_000620 NM_000632 NM_000870 NM_000918 NM_001001691 NM_001001795 NM_001003407 NM_001003408 NM_001003809 NM_001004055 NM_001004307 NM_001004349 NM_001007156 NM_001007277 NM_001007560 NM_001008528 NM_001008742 NM_001009566 NM_001013669 NM_001013673 NM_001013708 NM_001013721 NM_001014279 NM_001017922 NM_001018000 NM_001018016 NM_001018017 NM_001018021 NM_001024808 NM_001024843 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001102 NM_001140 NM_001183 NM_001190 NM_001348 NM_001380 NM_001505 NM_001535 NM_001681 NM_001838 NM_001914 NM_001936 NM_001996 NM_002163 NM_002313 NM_002319 NM_002337 NM_002385 NM_002456 NM_002522 NM_002699 NM_002744 NM_002757 NM_002843 NM_003003 NM_003036 NM_003088 NM_003127 NM_003565 NM_003850 NM_003924 NM_004040 NM_004093 NM_004203 NM_004207 NM_004302 NM_004356 NM_004387 NM_004393 NM_004455 NM_004610 NM_004745 NM_004746 NM_004762 NM_004862 NM_004926 NM_004937 NM_005226 NM_005312 NM_005380 NM_005479 NM_005599 NM_005618 NM_005624 NM_005647 NM_005682 NM_005688 NM_005860 NM_005986 NM_006065 NM_006162 NM_006176 NM_006278 NM_006387 NM_006497 NM_006549 NM_006565 NM_006651 NM_006720 NM_006738 NM_006943 NM_007050 NM_007106 NM_007200 NM_012083 NM_012163 NM_012189 NM_012425 NM_012471 NM_013284 NM_013337 NM_013396 NM_014360 NM_014396 NM_014587 NM_014665 NM_014727 NM_014792 NM_014835 NM_014914 NM_014919 NM_014944 NM_014961 NM_015088 NM_015140 NM_015210 NM_015213 NM_015278 NM_015282 NM_015310 NM_015385 NM_015518 NM_015537 NM_015610 NM_015719 NM_015898 NM_015949 NM_015980 NM_016003 NM_016147 NM_016217 NM_016223 NM_016256 NM_016423 NM_016523 NM_016547 NM_017431 NM_017456 NM_017575 NM_017649 NM_017652 NM_017728 NM_017869 NM_017994 NM_018197 NM_018303 NM_018419 NM_018538 NM_018579 NM_019020 NM_019606 NM_020126 NM_020180 NM_020182 NM_020394 NM_020433 NM_020546 NM_020715 NM_020747 NM_020777 NM_020851 NM_020918 NM_020993 NM_021025 NM_021095 NM_021116 NM_021267 NM_021798 NM_021805 NM_021916 NM_021934 NM_022049 NM_022088 NM_022114 NM_022468 NM_022737 NM_022777 NM_023067 NM_024301 NM_024309 NM_024337 NM_024544 NM_024667 NM_024676 NM_024757 NM_024758 NM_024832 NM_024877 NM_024886 NM_024887 NM_024940 NM_025069 NM_025090 NM_025124 NM_030626 NM_031215 NM_031231 NM_031232 NM_031309 NM_031310 NM_031434 NM_031475 NM_032017 NM_032714 NM_032737 NM_032854 NM_033111 NM_033201 NM_033225 NM_033291 NM_052813 NM_052847 NM_052878 NM_057179 NM_058184 NM_079837 NM_080605 NM_080631 NM_080647 NM_130797 NM_133170 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133336 NM_133371 NM_133373 NM_138415 NM_138790 NM_138992 NM_144498 NM_144645 NM_144767 NM_145160 NM_145162 NM_145185 NM_145230 NM_145328 NM_145807 NM_146388 NM_148888 NM_152274 NM_152437 NM_152547 NM_152684 NM_152724 NM_152934 NM_153499 NM_153500 NM_153690 NM_153768 NM_156036 NM_171982 NM_172020 NM_172216 NM_172226 NM_172387 NM_172388 NM_172389 NM_172390 NM_173661 NM_173681 NM_173804 NM_175873 NM_175876 NM_175898 NM_175901 NM_177427 NM_178172 NM_178516 NM_178818 NM_178830 NM_178841 NM_181078 NM_181079 NM_181355 NM_182607 NM_182687 NM_182744 NM_183425 NM_194303 NM_198253 NM_198254 NM_198537 NM_198679 NM_199076 NM_199169 NM_199170 NM_199171 NM_199229 NM_199426 NM_199454 NM_201524 NM_201525 NM_201565 NM_205861 NM_206909 NM_206962 NM_207320 NM_207391 NM_207419 NM_207428 NM_207449 NM_207451 NM_207465 NM_207483 NM_213566 XM_042698 XM_059909 XM_065166 XM_290401 XM_290936 XM_291277 XM_370603 XM_372019 XM_372028 XM_372030 XM_374110 XM_374186 XM_374270 XM_374766 XM_375042 XM_375491 XM_375665 XM_375697 XM_378655 XM_378753 XM_378798 XM_379106 XM_379135 XM_379434 XM_379459 XM_379501 XM_379651 XM_379877 XM_380120 XM_380171 XM_495888 XM_495939 XM_496143 XM_496836 XM_496895 XM_498491 XM_498517 XM_498557 XM_498563 XM_498582 XM_498584 XM_498602 XM_498898 XM_498907 XM_499029 XM_499093 XM_499114 XM_499155 XM_499323 XR_000167 XR_000184 XR_000216 XR_000294	Genes with multiple seed matches: NM_002319 NM_003924 NM_006738 NM_006943 NM_007200 NM_014396 NM_015949 NM_020851 NM_144767 NM_156036 NM_173681 NM_207451 XM_375042 XM_496143 XM_499093

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA