VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"cagcaugcaaaucgaagac"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1304
.
Total Genes with multiple seed matches:
79
.
Genes with at least one seed match:
NM_000059 NM_000065 NM_000092 NM_000111 NM_000165 NM_000199 NM_000202 NM_000220 NM_000237 NM_000254 NM_000272 NM_000275 NM_000301 NM_000310 NM_000311 NM_000319 NM_000337 NM_000346 NM_000361 NM_000368 NM_000458 NM_000474 NM_000480 NM_000539 NM_000555 NM_000599 NM_000602 NM_000611 NM_000633 NM_000682 NM_000685 NM_000724 NM_000780 NM_000786 NM_000793 NM_000798 NM_000800 NM_000810 NM_000817 NM_000820 NM_000821 NM_000833 NM_000876 NM_000877 NM_000885 NM_000944 NM_000958 NM_001001323 NM_001001331 NM_001001344 NM_001001411 NM_001001418 NM_001001419 NM_001001420 NM_001001438 NM_001001502 NM_001001664 NM_001001687 NM_001001688 NM_001001689 NM_001001873 NM_001001894 NM_001001973 NM_001002231 NM_001002232 NM_001002261 NM_001002262 NM_001002296 NM_001002810 NM_001002914 NM_001003407 NM_001003408 NM_001003712 NM_001003725 NM_001003800 NM_001003940 NM_001003942 NM_001003943 NM_001004054 NM_001004304 NM_001004307 NM_001004336 NM_001004342 NM_001004416 NM_001004439 NM_001005359 NM_001005364 NM_001005407 NM_001005417 NM_001005463 NM_001005527 NM_001005737 NM_001005753 NM_001005766 NM_001006641 NM_001006642 NM_001006643 NM_001007023 NM_001007097 NM_001007254 NM_001008234 NM_001008541 NM_001008563 NM_001008660 NM_001008710 NM_001008711 NM_001008727 NM_001008745 NM_001009566 NM_001009610 NM_001009811 NM_001009956 NM_001009960 NM_001010866 NM_001010891 NM_001010917 NM_001010924 NM_001010984 NM_001011541 NM_001011713 NM_001012425 NM_001012446 NM_001012651 NM_001012659 NM_001012733 NM_001012734 NM_001012753 NM_001012981 NM_001012987 NM_001013399 NM_001013640 NM_001013655 NM_001013681 NM_001013697 NM_001013720 NM_001013746 NM_001014373 NM_001014380 NM_001014434 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001015886 NM_001017424 NM_001017425 NM_001017919 NM_001018025 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018095 NM_001018097 NM_001018098 NM_001018099 NM_001018102 NM_001020818 NM_001020819 NM_001020820 NM_001020821 NM_001023563 NM_001023567 NM_001024372 NM_001024401 NM_001024463 NM_001024631 NM_001024646 NM_001024657 NM_001024843 NM_001024844 NM_001024948 NM_001025 NM_001025100 NM_001025160 NM_001036 NM_001044 NM_001096 NM_001116 NM_001167 NM_001185 NM_001186 NM_001207 NM_001224 NM_001388 NM_001390 NM_001419 NM_001438 NM_001548 NM_001570 NM_001609 NM_001627 NM_001650 NM_001659 NM_001683 NM_001695 NM_001718 NM_001766 NM_001773 NM_001784 NM_001802 NM_001973 NM_002025 NM_002055 NM_002111 NM_002112 NM_002196 NM_002207 NM_002214 NM_002223 NM_002228 NM_002231 NM_002235 NM_002254 NM_002313 NM_002343 NM_002354 NM_002356 NM_002357 NM_002372 NM_002382 NM_002420 NM_002526 NM_002568 NM_002604 NM_002609 NM_002699 NM_002702 NM_002718 NM_002719 NM_002735 NM_002780 NM_002848 NM_002858 NM_002859 NM_002959 NM_002987 NM_002998 NM_003016 NM_003026 NM_003047 NM_003048 NM_003070 NM_003085 NM_003107 NM_003108 NM_003165 NM_003218 NM_003222 NM_003224 NM_003236 NM_003239 NM_003315 NM_003316 NM_003363 NM_003371 NM_003388 NM_003441 NM_003478 NM_003489 NM_003507 NM_003574 NM_003576 NM_003629 NM_003644 NM_003658 NM_003661 NM_003683 NM_003722 NM_003751 NM_003778 NM_003780 NM_003790 NM_003825 NM_003830 NM_003840 NM_003850 NM_003861 NM_003869 NM_003890 NM_003906 NM_003939 NM_004028 NM_004061 NM_004071 NM_004080 NM_004093 NM_004098 NM_004124 NM_004200 NM_004342 NM_004368 NM_004414 NM_004430 NM_004437 NM_004473 NM_004474 NM_004521 NM_004540 NM_004566 NM_004586 NM_004593 NM_004595 NM_004621 NM_004683 NM_004684 NM_004691 NM_004711 NM_004723 NM_004730 NM_004737 NM_004753 NM_004759 NM_004763 NM_004774 NM_004775 NM_004804 NM_004835 NM_004842 NM_004848 NM_004850 NM_004901 NM_004921 NM_004926 NM_004978 NM_005050 NM_005065 NM_005082 NM_005106 NM_005108 NM_005130 NM_005133 NM_005142 NM_005174 NM_005187 NM_005190 NM_005206 NM_005281 NM_005284 NM_005324 NM_005338 NM_005386 NM_005431 NM_005432 NM_005456 NM_005506 NM_005551 NM_005553 NM_005575 NM_005577 NM_005583 NM_005593 NM_005618 NM_005631 NM_005647 NM_005649 NM_005656 NM_005668 NM_005714 NM_005766 NM_005780 NM_005828 NM_005841 NM_005862 NM_005884 NM_005895 NM_005899 NM_005903 NM_005933 NM_005946 NM_005957 NM_005962 NM_005969 NM_006033 NM_006065 NM_006107 NM_006141 NM_006195 NM_006206 NM_006212 NM_006216 NM_006235 NM_006237 NM_006298 NM_006315 NM_006329 NM_006358 NM_006378 NM_006389 NM_006404 NM_006419 NM_006449 NM_006463 NM_006475 NM_006499 NM_006534 NM_006557 NM_006589 NM_006599 NM_006601 NM_006606 NM_006609 NM_006613 NM_006614 NM_006673 NM_006674 NM_006676 NM_006720 NM_006773 NM_006867 NM_006925 NM_007045 NM_007084 NM_007166 NM_007207 NM_007220 NM_007249 NM_007306 NM_007335 NM_007336 NM_007337 NM_007338 NM_007371 NM_009585 NM_012106 NM_012128 NM_012199 NM_012211 NM_012236 NM_012256 NM_012271 NM_012275 NM_012425 NM_012464 NM_012479 NM_012482 NM_013233 NM_013243 NM_013252 NM_013274 NM_013286 NM_013305 NM_013309 NM_013347 NM_013364 NM_013382 NM_013384 NM_013447 NM_013989 NM_014021 NM_014164 NM_014217 NM_014231 NM_014246 NM_014344 NM_014349 NM_014356 NM_014411 NM_014556 NM_014616 NM_014625 NM_014631 NM_014634 NM_014659 NM_014665 NM_014668 NM_014671 NM_014678 NM_014721 NM_014723 NM_014757 NM_014772 NM_014787 NM_014804 NM_014810 NM_014854 NM_014880 NM_014910 NM_014914 NM_014926 NM_014944 NM_014945 NM_014953 NM_014969 NM_014984 NM_014997 NM_015003 NM_015063 NM_015064 NM_015076 NM_015080 NM_015082 NM_015088 NM_015092 NM_015093 NM_015101 NM_015116 NM_015144 NM_015149 NM_015172 NM_015178 NM_015231 NM_015234 NM_015236 NM_015245 NM_015250 NM_015254 NM_015315 NM_015353 NM_015417 NM_015444 NM_015532 NM_015540 NM_015560 NM_015576 NM_015600 NM_015655 NM_015711 NM_016018 NM_016028 NM_016066 NM_016074 NM_016079 NM_016087 NM_016099 NM_016119 NM_016144 NM_016173 NM_016220 NM_016264 NM_016272 NM_016348 NM_016351 NM_016377 NM_016407 NM_016412 NM_016424 NM_016463 NM_016464 NM_016548 NM_016557 NM_016561 NM_016590 NM_016592 NM_016598 NM_016936 NM_016940 NM_017409 NM_017418 NM_017433 NM_017439 NM_017489 NM_017495 NM_017554 NM_017602 NM_017617 NM_017644 NM_017662 NM_017668 NM_017725 NM_017737 NM_017740 NM_017793 NM_017799 NM_017828 NM_017835 NM_017860 NM_017888 NM_017904 NM_017911 NM_017923 NM_017928 NM_017936 NM_017968 NM_017990 NM_017993 NM_018011 NM_018013 NM_018014 NM_018018 NM_018047 NM_018069 NM_018092 NM_018101 NM_018122 NM_018157 NM_018180 NM_018194 NM_018215 NM_018307 NM_018371 NM_018409 NM_018416 NM_018489 NM_018534 NM_018607 NM_018660 NM_018667 NM_018684 NM_018715 NM_018717 NM_018964 NM_018987 NM_019002 NM_019016 NM_019027 NM_019034 NM_019084 NM_019086 NM_020062 NM_020133 NM_020139 NM_020163 NM_020181 NM_020190 NM_020204 NM_020323 NM_020324 NM_020325 NM_020326 NM_020337 NM_020405 NM_020407 NM_020412 NM_020443 NM_020643 NM_020727 NM_020771 NM_020792 NM_020813 NM_020814 NM_020825 NM_020836 NM_020841 NM_020851 NM_020904 NM_020933 NM_020956 NM_020957 NM_020970 NM_020996 NM_021098 NM_021127 NM_021131 NM_021138 NM_021144 NM_021163 NM_021164 NM_021165 NM_021215 NM_021248 NM_021570 NM_021615 NM_021627 NM_021722 NM_021723 NM_021813 NM_021817 NM_021943 NM_021945 NM_021949 NM_021973 NM_022006 NM_022049 NM_022054 NM_022075 NM_022081 NM_022114 NM_022134 NM_022150 NM_022167 NM_022334 NM_022351 NM_022359 NM_022458 NM_022773 NM_022788 NM_022817 NM_022833 NM_022899 NM_023032 NM_023033 NM_023107 NM_023108 NM_024015 NM_024025 NM_024090 NM_024101 NM_024295 NM_024312 NM_024325 NM_024544 NM_024557 NM_024602 NM_024614 NM_024616 NM_024657 NM_024665 NM_024669 NM_024670 NM_024705 NM_024709 NM_024766 NM_024778 NM_024894 NM_024935 NM_024974 NM_025023 NM_025181 NM_025201 NM_025219 NM_025224 NM_025237 NM_030569 NM_030576 NM_030629 NM_030644 NM_030661 NM_030667 NM_030668 NM_030669 NM_030670 NM_030671 NM_030882 NM_030916 NM_030928 NM_030949 NM_030952 NM_030961 NM_030979 NM_031283 NM_031310 NM_031453 NM_031482 NM_031850 NM_031858 NM_031862 NM_031910 NM_031959 NM_032045 NM_032049 NM_032116 NM_032145 NM_032148 NM_032204 NM_032208 NM_032217 NM_032242 NM_032311 NM_032341 NM_032357 NM_032385 NM_032421 NM_032445 NM_032486 NM_032505 NM_032569 NM_032581 NM_032632 NM_032644 NM_032800 NM_032804 NM_032817 NM_032829 NM_032854 NM_032927 NM_032932 NM_032960 NM_032975 NM_032976 NM_032980 NM_032983 NM_032984 NM_033049 NM_033112 NM_033133 NM_033136 NM_033137 NM_033138 NM_033139 NM_033140 NM_033153 NM_033157 NM_033285 NM_033348 NM_033387 NM_033410 NM_033455 NM_033456 NM_033503 NM_033514 NM_033544 NM_033551 NM_033626 NM_033637 NM_052816 NM_052847 NM_052861 NM_052901 NM_052959 NM_054030 NM_057168 NM_057175 NM_058163 NM_058172 NM_058182 NM_058200 NM_058202 NM_078481 NM_078483 NM_080551 NM_080733 NM_080792 NM_080832 NM_080833 NM_130439 NM_130469 NM_130775 NM_130798 NM_130807 NM_130809 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_133460 NM_133468 NM_133493 NM_133642 NM_134264 NM_134422 NM_134423 NM_134424 NM_138280 NM_138293 NM_138295 NM_138348 NM_138372 NM_138373 NM_138429 NM_138456 NM_138494 NM_138553 NM_138559 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138633 NM_138713 NM_138714 NM_138732 NM_138734 NM_138969 NM_139045 NM_139162 NM_139177 NM_139201 NM_139284 NM_144490 NM_144577 NM_144578 NM_144586 NM_144588 NM_144607 NM_144726 NM_144728 NM_144729 NM_144779 NM_145048 NM_145112 NM_145113 NM_145179 NM_145253 NM_145257 NM_145301 NM_145304 NM_145308 NM_145342 NM_145343 NM_145344 NM_145349 NM_145350 NM_145351 NM_145637 NM_145639 NM_145640 NM_145641 NM_145642 NM_145818 NM_147194 NM_148175 NM_148176 NM_148842 NM_148886 NM_148894 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148971 NM_148972 NM_148973 NM_148974 NM_152253 NM_152266 NM_152270 NM_152287 NM_152309 NM_152380 NM_152382 NM_152422 NM_152423 NM_152451 NM_152461 NM_152484 NM_152509 NM_152569 NM_152574 NM_152724 NM_152763 NM_152840 NM_152841 NM_152842 NM_152843 NM_152857 NM_152858 NM_152869 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_152995 NM_153010 NM_153027 NM_153038 NM_153235 NM_153246 NM_153320 NM_153345 NM_153610 NM_153631 NM_153632 NM_153683 NM_153756 NM_153757 NM_153764 NM_153765 NM_153766 NM_153767 NM_172172 NM_172239 NM_172247 NM_172248 NM_172249 NM_172364 NM_173065 NM_173170 NM_173214 NM_173463 NM_173469 NM_173475 NM_173528 NM_173531 NM_173547 NM_173568 NM_173570 NM_173624 NM_173641 NM_173644 NM_173651 NM_173728 NM_173803 NM_173805 NM_173822 NM_173851 NM_174892 NM_174918 NM_174921 NM_174939 NM_174950 NM_175866 NM_175884 NM_175900 NM_175920 NM_175931 NM_176792 NM_176806 NM_176876 NM_177427 NM_177531 NM_177937 NM_177963 NM_177964 NM_177995 NM_178000 NM_178001 NM_178002 NM_178003 NM_178037 NM_178038 NM_178039 NM_178040 NM_178136 NM_178151 NM_178152 NM_178153 NM_178175 NM_178445 NM_178470 NM_178514 NM_178547 NM_178586 NM_178835 NM_178864 NM_180981 NM_181041 NM_181076 NM_181077 NM_181268 NM_181270 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181290 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301 NM_181336 NM_181534 NM_181659 NM_181689 NM_181746 NM_181784 NM_181825 NM_181826 NM_181827 NM_181836 NM_181897 NM_182481 NM_182482 NM_182484 NM_182508 NM_182522 NM_182565 NM_182596 NM_182626 NM_182712 NM_182740 NM_182812 NM_182831 NM_182832 NM_182909 NM_183079 NM_183238 NM_183425 NM_184042 NM_194285 NM_194299 NM_194313 NM_194429 NM_194434 NM_197956 NM_197962 NM_198061 NM_198213 NM_198264 NM_198266 NM_198390 NM_198445 NM_198452 NM_198471 NM_198482 NM_198502 NM_198552 NM_198830 NM_198849 NM_198851 NM_198859 NM_198889 NM_198973 NM_199045 NM_199047 NM_199050 NM_199133 NM_199182 NM_199245 NM_199282 NM_199283 NM_199327 NM_199337 NM_199345 NM_199427 NM_199443 NM_199454 NM_201267 NM_201277 NM_201397 NM_201399 NM_201432 NM_201433 NM_201543 NM_201544 NM_201545 NM_201570 NM_201571 NM_201572 NM_201590 NM_201593 NM_201596 NM_201597 NM_201628 NM_201647 NM_203301 NM_203329 NM_203330 NM_203331 NM_203342 NM_203343 NM_203381 NM_203382 NM_203397 NM_203417 NM_203418 NM_203423 NM_205856 NM_206594 NM_206595 NM_206813 NM_206814 NM_206866 NM_206877 NM_206887 NM_207003 NM_207330 NM_207331 NM_207387 NM_207389 NM_207422 NM_207451 NM_207461 NM_207478 NM_207506 NM_207646 NM_212543 NM_212554 NM_213622 NM_213633 XM_031689 XM_032278 XM_039570 XM_042936 XM_046600 XM_047550 XM_047995 XM_051200 XM_055866 XM_059929 XM_067585 XM_087672 XM_088459 XM_167044 XM_208234 XM_211367 XM_290342 XM_290527 XM_290547 XM_290712 XM_291095 XM_294765 XM_370603 XM_370723 XM_370838 XM_371097 XM_372193 XM_372233 XM_373466 XM_373692 XM_373737 XM_373765 XM_373810 XM_373831 XM_373846 XM_374017 XM_374115 XM_374767 XM_375090 XM_375373 XM_375928 XM_375935 XM_376254 XM_376680 XM_376727 XM_376784 XM_378178 XM_378238 XM_378273 XM_378312 XM_378327 XM_378329 XM_378394 XM_378437 XM_378511 XM_378698 XM_378730 XM_378747 XM_378758 XM_378976 XM_378985 XM_379069 XM_379100 XM_379114 XM_379123 XM_379146 XM_379391 XM_379433 XM_379543 XM_379605 XM_379608 XM_379619 XM_379636 XM_379637 XM_379934 XM_379979 XM_495844 XM_495902 XM_495926 XM_496088 XM_496134 XM_496191 XM_496349 XM_496577 XM_496618 XM_496876 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497002 XM_498427 XM_498440 XM_498449 XM_498511 XM_498563 XM_498567 XM_498609 XM_498673 XM_498684 XM_498687 XM_498727 XM_498777 XM_498782 XM_498802 XM_498804 XM_498823 XM_498824 XM_498825 XM_498859 XM_498972 XM_498984 XM_499024 XM_499038 XM_499045 XM_499056 XM_499065 XM_499093 XM_499102 XM_499158 XM_499160 XM_499164 XM_499293 XM_499497 XM_499503 XM_499515 XM_499570 XM_499579 XM_499580 XR_000184 XR_000194 XR_000261 XR_000268 XR_000292 XR_000294
Genes with multiple seed matches:
NM_000254 NM_000346 NM_000368 NM_000611 NM_000633 NM_000793 NM_001001331 NM_001007023 NM_001009610 NM_001009956 NM_001012651 NM_001012981 NM_001013746 NM_001014380 NM_001036 NM_001609 NM_001683 NM_002699 NM_002959 NM_004093 NM_004430 NM_004921 NM_005647 NM_005828 NM_006599 NM_007335 NM_007336 NM_007338 NM_012271 NM_012425 NM_013989 NM_014164 NM_016220 NM_016592 NM_017936 NM_017968 NM_018069 NM_018717 NM_023032 NM_024670 NM_024705 NM_030629 NM_031453 NM_032116 NM_058172 NM_080833 NM_130809 NM_138713 NM_138714 NM_144779 NM_145257 NM_152253 NM_152309 NM_152724 NM_152840 NM_152842 NM_172239 NM_173214 NM_173805 NM_175884 NM_177963 NM_182832 NM_184042 NM_198390 NM_199050 NM_203329 NM_203330 NM_203331 NM_207506 XM_373831 XM_376784 XM_379123 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_498687 XR_000268
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)