VIRsiRNAdb

Predicted off-targets seeds for siRNA "ccgaggucgaaacguacgu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :168.
Total Genes with multiple seed matches: 2.
Genes with at least one seed match: NM_000068 NM_000138 NM_000417 NM_000500 NM_000547 NM_000991 NM_001003399 NM_001003845 NM_001004356 NM_001004358 NM_001007271 NM_001007274 NM_001007275 NM_001008410 NM_001009554 NM_001010911 NM_001017405 NM_001025076 NM_001025077 NM_001025231 NM_001092 NM_001280 NM_001387 NM_001440 NM_001495 NM_001771 NM_002193 NM_002196 NM_002293 NM_002582 NM_002957 NM_003012 NM_003118 NM_003189 NM_003404 NM_003436 NM_003624 NM_003759 NM_003808 NM_003895 NM_004056 NM_004302 NM_005502 NM_005882 NM_005883 NM_005902 NM_005911 NM_006315 NM_006454 NM_006561 NM_006738 NM_007014 NM_007043 NM_007200 NM_007322 NM_013328 NM_014286 NM_014403 NM_014468 NM_014667 NM_014701 NM_014728 NM_014741 NM_014786 NM_014844 NM_014919 NM_015025 NM_015064 NM_015085 NM_015155 NM_016474 NM_017742 NM_017979 NM_017999 NM_018092 NM_018210 NM_018234 NM_018409 NM_018976 NM_019022 NM_019105 NM_020148 NM_020801 NM_020863 NM_021161 NM_021242 NM_021828 NM_021923 NM_021962 NM_022818 NM_023107 NM_023108 NM_024052 NM_024614 NM_024949 NM_030622 NM_030626 NM_030817 NM_032012 NM_032374 NM_032709 NM_032797 NM_032933 NM_032994 NM_052892 NM_053055 NM_058181 NM_130474 NM_130475 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_138317 NM_138318 NM_138453 NM_138568 NM_138699 NM_139323 NM_144767 NM_145166 NM_152554 NM_153038 NM_153256 NM_172087 NM_172088 NM_172089 NM_173551 NM_173800 NM_175039 NM_175040 NM_175719 NM_175721 NM_175722 NM_176853 NM_178037 NM_178038 NM_178039 NM_178040 NM_178516 NM_182740 NM_182758 NM_182915 NM_199424 NM_201520 NM_203446 NM_207326 NM_207439 NM_207485 NM_207489 XM_027236 XM_045421 XM_046264 XM_053966 XM_291095 XM_373547 XM_373883 XM_378411 XM_379391 XM_379629 XM_496077 XM_498554 XM_498945 XM_499152 XR_000184 XR_000275 XR_000294	Genes with multiple seed matches: NM_017999 NM_030626

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA