VIRsiRNAdb

Predicted off-targets seeds for siRNA "ggauauuauuucuucggag" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1135.
Total Genes with multiple seed matches: 45.
Genes with at least one seed match: NM_000088 NM_000104 NM_000115 NM_000167 NM_000235 NM_000237 NM_000244 NM_000252 NM_000254 NM_000276 NM_000303 NM_000330 NM_000337 NM_000352 NM_000374 NM_000423 NM_000429 NM_000451 NM_000479 NM_000527 NM_000554 NM_000598 NM_000599 NM_000617 NM_000626 NM_000664 NM_000682 NM_000689 NM_000719 NM_000728 NM_000746 NM_000809 NM_000838 NM_000843 NM_000849 NM_000891 NM_000911 NM_000918 NM_000951 NM_000997 NM_001001188 NM_001001331 NM_001001556 NM_001001681 NM_001001683 NM_001001696 NM_001001706 NM_001001709 NM_001001788 NM_001001871 NM_001001878 NM_001001975 NM_001002231 NM_001002232 NM_001002260 NM_001002799 NM_001002860 NM_001002881 NM_001003794 NM_001003845 NM_001004354 NM_001005366 NM_001005375 NM_001005413 NM_001005414 NM_001005785 NM_001005786 NM_001006605 NM_001006616 NM_001006624 NM_001006625 NM_001006636 NM_001007226 NM_001007227 NM_001007228 NM_001007229 NM_001007230 NM_001007279 NM_001007466 NM_001007543 NM_001008215 NM_001008396 NM_001008408 NM_001008563 NM_001009566 NM_001009571 NM_001009894 NM_001009913 NM_001009956 NM_001009957 NM_001010982 NM_001011514 NM_001012276 NM_001012339 NM_001012393 NM_001012418 NM_001012508 NM_001012651 NM_001012732 NM_001012733 NM_001012734 NM_001012958 NM_001013398 NM_001013629 NM_001013650 NM_001013680 NM_001013734 NM_001013748 NM_001013839 NM_001013841 NM_001014336 NM_001014342 NM_001015047 NM_001015048 NM_001015049 NM_001017368 NM_001017915 NM_001017970 NM_001017995 NM_001018029 NM_001018064 NM_001018065 NM_001018066 NM_001018111 NM_001023560 NM_001023565 NM_001024401 NM_001024631 NM_001024676 NM_001024912 NM_001025242 NM_001025243 NM_001035 NM_001128 NM_001188 NM_001218 NM_001234 NM_001236 NM_001271 NM_001315 NM_001415 NM_001420 NM_001451 NM_001497 NM_001518 NM_001543 NM_001548 NM_001569 NM_001587 NM_001617 NM_001621 NM_001642 NM_001683 NM_001687 NM_001698 NM_001712 NM_001716 NM_001717 NM_001793 NM_001794 NM_001804 NM_001821 NM_001844 NM_001845 NM_001858 NM_001860 NM_001901 NM_001918 NM_001921 NM_001923 NM_001957 NM_001963 NM_001987 NM_001993 NM_001994 NM_002007 NM_002025 NM_002030 NM_002044 NM_002081 NM_002084 NM_002099 NM_002136 NM_002142 NM_002147 NM_002190 NM_002200 NM_002207 NM_002232 NM_002246 NM_002253 NM_002254 NM_002267 NM_002417 NM_002480 NM_002497 NM_002505 NM_002545 NM_002608 NM_002632 NM_002655 NM_002662 NM_002673 NM_002725 NM_002730 NM_002737 NM_002755 NM_002816 NM_002823 NM_002847 NM_002938 NM_003023 NM_003045 NM_003107 NM_003127 NM_003161 NM_003200 NM_003248 NM_003277 NM_003320 NM_003322 NM_003328 NM_003347 NM_003453 NM_003490 NM_003496 NM_003505 NM_003507 NM_003559 NM_003563 NM_003569 NM_003617 NM_003633 NM_003653 NM_003679 NM_003681 NM_003839 NM_003840 NM_003855 NM_003872 NM_003885 NM_003953 NM_003966 NM_003976 NM_003978 NM_004040 NM_004081 NM_004093 NM_004109 NM_004124 NM_004172 NM_004206 NM_004296 NM_004308 NM_004343 NM_004394 NM_004414 NM_004428 NM_004429 NM_004430 NM_004431 NM_004443 NM_004464 NM_004486 NM_004518 NM_004569 NM_004583 NM_004586 NM_004703 NM_004722 NM_004733 NM_004747 NM_004792 NM_004804 NM_004848 NM_004873 NM_004909 NM_004943 NM_004991 NM_004992 NM_005030 NM_005065 NM_005076 NM_005126 NM_005173 NM_005184 NM_005199 NM_005221 NM_005233 NM_005239 NM_005244 NM_005253 NM_005263 NM_005397 NM_005399 NM_005461 NM_005519 NM_005541 NM_005551 NM_005573 NM_005578 NM_005665 NM_005685 NM_005699 NM_005730 NM_005737 NM_005786 NM_005819 NM_005842 NM_005860 NM_005935 NM_005964 NM_005988 NM_006011 NM_006021 NM_006033 NM_006035 NM_006037 NM_006040 NM_006045 NM_006060 NM_006108 NM_006176 NM_006180 NM_006206 NM_006224 NM_006254 NM_006279 NM_006291 NM_006325 NM_006350 NM_006361 NM_006471 NM_006474 NM_006509 NM_006526 NM_006628 NM_006651 NM_006675 NM_006676 NM_006690 NM_006756 NM_006829 NM_006846 NM_006852 NM_006905 NM_006938 NM_006945 NM_006992 NM_007001 NM_007006 NM_007010 NM_007028 NM_007030 NM_007031 NM_007042 NM_007050 NM_007057 NM_007072 NM_007084 NM_007085 NM_007086 NM_007151 NM_007174 NM_007177 NM_007195 NM_007233 NM_007246 NM_007283 NM_007331 NM_007338 NM_007371 NM_007372 NM_007374 NM_009589 NM_012072 NM_012102 NM_012121 NM_012158 NM_012171 NM_012231 NM_012232 NM_012253 NM_012256 NM_012261 NM_012262 NM_012296 NM_012297 NM_012301 NM_012328 NM_012395 NM_012420 NM_012445 NM_012448 NM_012458 NM_012461 NM_013276 NM_013289 NM_013308 NM_013347 NM_013372 NM_013401 NM_013433 NM_013937 NM_013960 NM_014015 NM_014016 NM_014226 NM_014282 NM_014286 NM_014305 NM_014313 NM_014333 NM_014393 NM_014484 NM_014518 NM_014562 NM_014564 NM_014569 NM_014586 NM_014587 NM_014596 NM_014631 NM_014647 NM_014665 NM_014667 NM_014668 NM_014836 NM_014870 NM_014888 NM_014910 NM_014919 NM_014944 NM_014956 NM_014959 NM_014965 NM_015002 NM_015005 NM_015023 NM_015040 NM_015071 NM_015072 NM_015078 NM_015149 NM_015163 NM_015172 NM_015185 NM_015191 NM_015219 NM_015226 NM_015227 NM_015266 NM_015277 NM_015289 NM_015313 NM_015328 NM_015332 NM_015353 NM_015355 NM_015391 NM_015469 NM_015516 NM_015605 NM_015621 NM_015683 NM_015720 NM_015855 NM_015936 NM_016081 NM_016083 NM_016093 NM_016144 NM_016151 NM_016156 NM_016162 NM_016169 NM_016206 NM_016258 NM_016276 NM_016282 NM_016306 NM_016328 NM_016376 NM_016389 NM_016424 NM_016426 NM_016448 NM_016463 NM_016497 NM_016551 NM_016563 NM_016642 NM_016734 NM_016946 NM_017410 NM_017483 NM_017485 NM_017486 NM_017488 NM_017705 NM_017720 NM_017772 NM_017824 NM_017872 NM_017902 NM_017909 NM_017923 NM_017949 NM_017954 NM_017980 NM_018027 NM_018036 NM_018121 NM_018166 NM_018215 NM_018247 NM_018283 NM_018302 NM_018366 NM_018370 NM_018389 NM_018410 NM_018431 NM_018440 NM_018488 NM_018555 NM_018646 NM_018648 NM_018669 NM_018715 NM_018841 NM_018964 NM_019001 NM_019009 NM_019011 NM_019022 NM_019027 NM_019051 NM_019061 NM_019081 NM_019092 NM_019591 NM_019597 NM_019845 NM_019885 NM_020038 NM_020131 NM_020133 NM_020150 NM_020177 NM_020213 NM_020214 NM_020228 NM_020245 NM_020338 NM_020345 NM_020363 NM_020364 NM_020405 NM_020420 NM_020429 NM_020440 NM_020673 NM_020698 NM_020708 NM_020715 NM_020745 NM_020753 NM_020771 NM_020794 NM_020802 NM_020810 NM_020870 NM_020898 NM_020899 NM_020914 NM_020927 NM_020948 NM_020960 NM_021083 NM_021155 NM_021242 NM_021252 NM_021602 NM_021615 NM_021619 NM_021637 NM_021643 NM_021705 NM_021914 NM_021945 NM_021978 NM_021992 NM_022058 NM_022070 NM_022114 NM_022140 NM_022469 NM_022648 NM_022658 NM_022817 NM_022819 NM_022905 NM_022976 NM_023016 NM_024060 NM_024076 NM_024087 NM_024301 NM_024334 NM_024411 NM_024490 NM_024507 NM_024510 NM_024511 NM_024513 NM_024522 NM_024548 NM_024569 NM_024620 NM_024645 NM_024659 NM_024670 NM_024723 NM_024729 NM_024772 NM_024830 NM_024834 NM_024881 NM_024889 NM_024894 NM_024915 NM_024923 NM_024974 NM_025010 NM_025048 NM_025158 NM_025197 NM_025225 NM_025264 NM_030648 NM_030756 NM_030762 NM_030777 NM_030782 NM_030797 NM_030806 NM_030809 NM_030916 NM_030927 NM_030945 NM_030964 NM_031157 NM_031208 NM_031211 NM_031218 NM_031417 NM_031426 NM_031445 NM_031448 NM_031946 NM_031994 NM_032015 NM_032037 NM_032160 NM_032174 NM_032175 NM_032214 NM_032281 NM_032300 NM_032303 NM_032316 NM_032432 NM_032510 NM_032532 NM_032538 NM_032590 NM_032643 NM_032664 NM_032682 NM_032728 NM_032737 NM_032740 NM_032819 NM_032826 NM_032842 NM_032845 NM_032853 NM_032932 NM_032961 NM_032966 NM_032976 NM_032988 NM_032997 NM_032999 NM_033000 NM_033001 NM_033016 NM_033107 NM_033141 NM_033143 NM_033150 NM_033181 NM_033240 NM_033244 NM_033245 NM_033318 NM_033332 NM_033337 NM_033389 NM_033409 NM_033624 NM_033626 NM_033661 NM_052816 NM_052847 NM_052878 NM_052904 NM_052931 NM_053276 NM_053277 NM_057090 NM_057091 NM_057160 NM_057177 NM_057178 NM_058183 NM_080491 NM_080551 NM_080751 NM_080821 NM_080862 NM_080928 NM_130465 NM_130468 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_130807 NM_130842 NM_130843 NM_133170 NM_133332 NM_133333 NM_133463 NM_133465 NM_133467 NM_133632 NM_133633 NM_133634 NM_133635 NM_134470 NM_138295 NM_138393 NM_138395 NM_138426 NM_138456 NM_138566 NM_138574 NM_138638 NM_138782 NM_138962 NM_138999 NM_139012 NM_139014 NM_139177 NM_139320 NM_139321 NM_144501 NM_144502 NM_144503 NM_144504 NM_144578 NM_144585 NM_144600 NM_144618 NM_144670 NM_144973 NM_144976 NM_144997 NM_145045 NM_145056 NM_145102 NM_145239 NM_145285 NM_145295 NM_145308 NM_145311 NM_145347 NM_145348 NM_145891 NM_145892 NM_145893 NM_148911 NM_152300 NM_152308 NM_152342 NM_152403 NM_152444 NM_152449 NM_152480 NM_152486 NM_152511 NM_152529 NM_152619 NM_152736 NM_152739 NM_152760 NM_152793 NM_152832 NM_152899 NM_152990 NM_153012 NM_153013 NM_153027 NM_153035 NM_153045 NM_153235 NM_153264 NM_153320 NM_153343 NM_153355 NM_153378 NM_153609 NM_153613 NM_153619 NM_153639 NM_153832 NM_170693 NM_170694 NM_170711 NM_170781 NM_170783 NM_172110 NM_172111 NM_172112 NM_172113 NM_172229 NM_172239 NM_172367 NM_172374 NM_172390 NM_173042 NM_173043 NM_173044 NM_173522 NM_173531 NM_173535 NM_173536 NM_173562 NM_173587 NM_173599 NM_173611 NM_173621 NM_173627 NM_173664 NM_173681 NM_173803 NM_174871 NM_174890 NM_174911 NM_174940 NM_174950 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 NM_174972 NM_175058 NM_175060 NM_175077 NM_175747 NM_175767 NM_175857 NM_175898 NM_176084 NM_176085 NM_176086 NM_176095 NM_176823 NM_177401 NM_177959 NM_177965 NM_177966 NM_177972 NM_177978 NM_178126 NM_178129 NM_178138 NM_178438 NM_178469 NM_178815 NM_178829 NM_181349 NM_181435 NM_181714 NM_181782 NM_181807 NM_182526 NM_182598 NM_182685 NM_182700 NM_182758 NM_182760 NM_182798 NM_182799 NM_182801 NM_182924 NM_182970 NM_194278 NM_194283 NM_194286 NM_194303 NM_197968 NM_198157 NM_198225 NM_198243 NM_198287 NM_198389 NM_198404 NM_198484 NM_198488 NM_198537 NM_198545 NM_198550 NM_198553 NM_198835 NM_198859 NM_198939 NM_198956 NM_199437 NM_199438 NM_199439 NM_199454 NM_201266 NM_201278 NM_201279 NM_201281 NM_201348 NM_201434 NM_201437 NM_201650 NM_203311 NM_203374 NM_203391 NM_203400 NM_203417 NM_203418 NM_203453 NM_203499 NM_203504 NM_203505 NM_206925 NM_207111 NM_207116 NM_207349 NM_207393 NM_207426 NM_207428 NM_207434 NM_207436 NM_207451 NM_207463 NM_207486 NM_207518 NM_212464 NM_212467 NM_212539 NM_213602 XM_037523 XM_038436 XM_039515 XM_039570 XM_042698 XM_042936 XM_047357 XM_051081 XM_058931 XM_059396 XM_059689 XM_087762 XM_114166 XM_167044 XM_209554 XM_209569 XM_211983 XM_211995 XM_212170 XM_291729 XM_350880 XM_370758 XM_370838 XM_371204 XM_371254 XM_371623 XM_371755 XM_371845 XM_372013 XM_372019 XM_372028 XM_372030 XM_372045 XM_372050 XM_372138 XM_372267 XM_373506 XM_373606 XM_373726 XM_373744 XM_373896 XM_373922 XM_374078 XM_374269 XM_374803 XM_375007 XM_375041 XM_375443 XM_375558 XM_375646 XM_375697 XM_375698 XM_375929 XM_376018 XM_376049 XM_376062 XM_376558 XM_376784 XM_376795 XM_378208 XM_378367 XM_378398 XM_378546 XM_378549 XM_378589 XM_378620 XM_378712 XM_378758 XM_378787 XM_378842 XM_378855 XM_378860 XM_378883 XM_378908 XM_378946 XM_378970 XM_379072 XM_379075 XM_379114 XM_379146 XM_379309 XM_379363 XM_379406 XM_379452 XM_379458 XM_379547 XM_379551 XM_379632 XM_379643 XM_379664 XM_379665 XM_380172 XM_495807 XM_495909 XM_496050 XM_496056 XM_496075 XM_496134 XM_496202 XM_496348 XM_496690 XM_496692 XM_496773 XM_496945 XM_496946 XM_496947 XM_496948 XM_496949 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496957 XM_496960 XM_496961 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497072 XM_498424 XM_498474 XM_498545 XM_498557 XM_498571 XM_498610 XM_498648 XM_498704 XM_498736 XM_498737 XM_498810 XM_498811 XM_498818 XM_498850 XM_498899 XM_498901 XM_498984 XM_499092 XM_499096 XM_499125 XM_499153 XM_499154 XM_499170 XM_499181 XM_499554 XM_499602 XR_000192 XR_000195 XR_000265 XR_000266	Genes with multiple seed matches: NM_000237 NM_000527 NM_000838 NM_000911 NM_001002799 NM_001008396 NM_001012651 NM_001012733 NM_001012734 NM_001013629 NM_001793 NM_002662 NM_003496 NM_003885 NM_004992 NM_006011 NM_006037 NM_006045 NM_007086 NM_013372 NM_014647 NM_014665 NM_015227 NM_018247 NM_019081 NM_020133 NM_021083 NM_021155 NM_033332 NM_133634 NM_139177 NM_153355 NM_173562 NM_173627 NM_174940 NM_198484 NM_198859 NM_212464 XM_037523 XM_211983 XM_374803 XM_375443 XM_375698 XM_379643 XM_495909

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA