VIRsiRNAdb

Predicted off-targets seeds for siRNA "cagguucggaugguucggg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :744.
Total Genes with multiple seed matches: 33.
Genes with at least one seed match: NM_000076 NM_000088 NM_000135 NM_000441 NM_000719 NM_000744 NM_000843 NM_000849 NM_000896 NM_000918 NM_000962 NM_000997 NM_001001132 NM_001001188 NM_001001549 NM_001001550 NM_001001555 NM_001001681 NM_001001690 NM_001002269 NM_001002762 NM_001002847 NM_001002860 NM_001003796 NM_001003807 NM_001003941 NM_001004302 NM_001004342 NM_001004352 NM_001004354 NM_001005386 NM_001005388 NM_001005404 NM_001005407 NM_001006605 NM_001006616 NM_001006639 NM_001006640 NM_001007088 NM_001007169 NM_001008396 NM_001008408 NM_001009566 NM_001009571 NM_001009894 NM_001010850 NM_001010971 NM_001012393 NM_001012418 NM_001012651 NM_001012659 NM_001012732 NM_001012981 NM_001012982 NM_001013404 NM_001013622 NM_001013650 NM_001013671 NM_001013672 NM_001013677 NM_001013727 NM_001013839 NM_001014987 NM_001014988 NM_001014989 NM_001017915 NM_001017916 NM_001017917 NM_001017918 NM_001018112 NM_001023565 NM_001024401 NM_001024808 NM_001024956 NM_001025096 NM_001025097 NM_001049 NM_001066 NM_001092 NM_001102 NM_001114 NM_001259 NM_001271 NM_001274 NM_001391 NM_001543 NM_001616 NM_001650 NM_001681 NM_001821 NM_001844 NM_001860 NM_001915 NM_001921 NM_001965 NM_001969 NM_002006 NM_002099 NM_002105 NM_002124 NM_002126 NM_002161 NM_002235 NM_002267 NM_002319 NM_002351 NM_002359 NM_002371 NM_002389 NM_002399 NM_002501 NM_002545 NM_002576 NM_002577 NM_002613 NM_002699 NM_002816 NM_002834 NM_002938 NM_003036 NM_003070 NM_003200 NM_003234 NM_003246 NM_003255 NM_003288 NM_003347 NM_003382 NM_003404 NM_003462 NM_003496 NM_003520 NM_003528 NM_003574 NM_003653 NM_003657 NM_003681 NM_003799 NM_003855 NM_003872 NM_003924 NM_003950 NM_004028 NM_004050 NM_004124 NM_004145 NM_004160 NM_004170 NM_004171 NM_004195 NM_004296 NM_004316 NM_004343 NM_004349 NM_004380 NM_004384 NM_004385 NM_004430 NM_004438 NM_004455 NM_004462 NM_004472 NM_004494 NM_004505 NM_004516 NM_004518 NM_004539 NM_004560 NM_004583 NM_004612 NM_004630 NM_004655 NM_004687 NM_004711 NM_004729 NM_004744 NM_004745 NM_004780 NM_004848 NM_004918 NM_004947 NM_004959 NM_004960 NM_004995 NM_005008 NM_005010 NM_005030 NM_005065 NM_005076 NM_005098 NM_005126 NM_005168 NM_005173 NM_005221 NM_005311 NM_005374 NM_005378 NM_005417 NM_005461 NM_005506 NM_005540 NM_005541 NM_005573 NM_005583 NM_005611 NM_005631 NM_005665 NM_005683 NM_005722 NM_005786 NM_005806 NM_005819 NM_005883 NM_005910 NM_005935 NM_006040 NM_006133 NM_006208 NM_006328 NM_006348 NM_006380 NM_006395 NM_006432 NM_006449 NM_006459 NM_006540 NM_006628 NM_006651 NM_006658 NM_006675 NM_006774 NM_006809 NM_006815 NM_006898 NM_006918 NM_006946 NM_006962 NM_006992 NM_007014 NM_007030 NM_007050 NM_007086 NM_007162 NM_007168 NM_007189 NM_007331 NM_007335 NM_007336 NM_007338 NM_007359 NM_009588 NM_009589 NM_012072 NM_012102 NM_012121 NM_012158 NM_012171 NM_012232 NM_012253 NM_012256 NM_012284 NM_012396 NM_013276 NM_013286 NM_013292 NM_013336 NM_013372 NM_013401 NM_013416 NM_013417 NM_014207 NM_014346 NM_014387 NM_014393 NM_014405 NM_014425 NM_014521 NM_014587 NM_014604 NM_014610 NM_014647 NM_014653 NM_014661 NM_014665 NM_014667 NM_014678 NM_014690 NM_014699 NM_014701 NM_014766 NM_014776 NM_014830 NM_014836 NM_014926 NM_014944 NM_014946 NM_014957 NM_015002 NM_015044 NM_015056 NM_015070 NM_015090 NM_015101 NM_015137 NM_015191 NM_015194 NM_015219 NM_015229 NM_015246 NM_015270 NM_015277 NM_015278 NM_015289 NM_015305 NM_015332 NM_015392 NM_015440 NM_015570 NM_015894 NM_015963 NM_015985 NM_015995 NM_016042 NM_016201 NM_016224 NM_016363 NM_016376 NM_016417 NM_016426 NM_016505 NM_016621 NM_016834 NM_016835 NM_016841 NM_017409 NM_017626 NM_017632 NM_017647 NM_017736 NM_017776 NM_017787 NM_017804 NM_017813 NM_017846 NM_017896 NM_017909 NM_017913 NM_017923 NM_017954 NM_018181 NM_018198 NM_018201 NM_018332 NM_018340 NM_018366 NM_018370 NM_018390 NM_018400 NM_018427 NM_018431 NM_018482 NM_018488 NM_018667 NM_018672 NM_019001 NM_019011 NM_019061 NM_019081 NM_019119 NM_020149 NM_020150 NM_020170 NM_020227 NM_020228 NM_020405 NM_020429 NM_020443 NM_020472 NM_020473 NM_020647 NM_020713 NM_020745 NM_020839 NM_020866 NM_020894 NM_020898 NM_020948 NM_020975 NM_020980 NM_020983 NM_020993 NM_021059 NM_021064 NM_021093 NM_021098 NM_021134 NM_021146 NM_021215 NM_021250 NM_021252 NM_021619 NM_021643 NM_021960 NM_021962 NM_022071 NM_022438 NM_022439 NM_022440 NM_022658 NM_022746 NM_022753 NM_022817 NM_022822 NM_023004 NM_023011 NM_024076 NM_024085 NM_024100 NM_024110 NM_024114 NM_024337 NM_024492 NM_024545 NM_024627 NM_024652 NM_024729 NM_024733 NM_024889 NM_024894 NM_024915 NM_024944 NM_024945 NM_024952 NM_025002 NM_025092 NM_025112 NM_025124 NM_025158 NM_025197 NM_025201 NM_025224 NM_030576 NM_030622 NM_030655 NM_030665 NM_030756 NM_030759 NM_030782 NM_030820 NM_031208 NM_031268 NM_031295 NM_031445 NM_031888 NM_031896 NM_032037 NM_032255 NM_032262 NM_032294 NM_032303 NM_032310 NM_032317 NM_032329 NM_032377 NM_032501 NM_032551 NM_032682 NM_032711 NM_032740 NM_032752 NM_032824 NM_032833 NM_032853 NM_032932 NM_032978 NM_032979 NM_032981 NM_033034 NM_033064 NM_033093 NM_033131 NM_033141 NM_033150 NM_033161 NM_033393 NM_033400 NM_033405 NM_033412 NM_033421 NM_033550 NM_033624 NM_033631 NM_033661 NM_052847 NM_052859 NM_052996 NM_053056 NM_053276 NM_053286 NM_057169 NM_057170 NM_078483 NM_080282 NM_080415 NM_080417 NM_080551 NM_080591 NM_080627 NM_080687 NM_130465 NM_130770 NM_133170 NM_138298 NM_138356 NM_138369 NM_138499 NM_138636 NM_138640 NM_138706 NM_138781 NM_138934 NM_139045 NM_139177 NM_139323 NM_144575 NM_144623 NM_144637 NM_144639 NM_144662 NM_144669 NM_144976 NM_144991 NM_145178 NM_145239 NM_145257 NM_145308 NM_145727 NM_147131 NM_148902 NM_152275 NM_152384 NM_152403 NM_152418 NM_152458 NM_152619 NM_152793 NM_152897 NM_152903 NM_153235 NM_153320 NM_153365 NM_153381 NM_153451 NM_153619 NM_153708 NM_153712 NM_153812 NM_153826 NM_170674 NM_170675 NM_170676 NM_170677 NM_172206 NM_172232 NM_172315 NM_172316 NM_172350 NM_172351 NM_172352 NM_172353 NM_172354 NM_172355 NM_172356 NM_172357 NM_172358 NM_172359 NM_172360 NM_172361 NM_173359 NM_173473 NM_173627 NM_173646 NM_173649 NM_173673 NM_173833 NM_174871 NM_174892 NM_174911 NM_174950 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174977 NM_175058 NM_175634 NM_175635 NM_175636 NM_175709 NM_175767 NM_175923 NM_176084 NM_176085 NM_176086 NM_176095 NM_176853 NM_177959 NM_177978 NM_178129 NM_178469 NM_178520 NM_178829 NM_178867 NM_181336 NM_181349 NM_181714 NM_181733 NM_181985 NM_182526 NM_182546 NM_182556 NM_182570 NM_182584 NM_182763 NM_182798 NM_182799 NM_182801 NM_183004 NM_183245 NM_194286 NM_194299 NM_194324 NM_194434 NM_198157 NM_198225 NM_198291 NM_198334 NM_198335 NM_198484 NM_198521 NM_198550 NM_198553 NM_198582 NM_198939 NM_199206 NM_199245 NM_199249 NM_199250 NM_199343 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 NM_199424 NM_199436 NM_199437 NM_199438 NM_199439 NM_201266 NM_201279 NM_201434 NM_201650 NM_201998 NM_203400 NM_203453 NM_206841 NM_207111 NM_207116 NM_207117 NM_207391 NM_207400 NM_207428 NM_207504 NM_207581 NM_213589 NM_213649 NM_213650 XM_038150 XM_039515 XM_046305 XM_051081 XM_059689 XM_117294 XM_170842 XM_211983 XM_290842 XM_291128 XM_291204 XM_370839 XM_371755 XM_373726 XM_374078 XM_374134 XM_374437 XM_375443 XM_376189 XM_376558 XM_376658 XM_378236 XM_378398 XM_378549 XM_378628 XM_378661 XM_378692 XM_378698 XM_378786 XM_378855 XM_378858 XM_378860 XM_378883 XM_378908 XM_379146 XM_379254 XM_379363 XM_379381 XM_379452 XM_379515 XM_379897 XM_380139 XM_380171 XM_380172 XM_495909 XM_496724 XM_497080 XM_498491 XM_498587 XM_498610 XM_498631 XM_498667 XM_498681 XM_498689 XM_498739 XM_498945 XM_498972 XM_498984 XM_498988 XM_499041 XM_499142 XM_499181 XM_499187 XR_000254 XR_000273	Genes with multiple seed matches: NM_000843 NM_001001690 NM_001049 NM_001092 NM_002699 NM_003924 NM_003950 NM_004539 NM_004612 NM_007014 NM_012102 NM_012232 NM_014667 NM_015002 NM_020227 NM_020228 NM_020405 NM_020713 NM_021962 NM_033624 NM_153320 NM_153451 NM_153812 NM_175058 NM_198939 NM_199424 NM_199437 NM_199438 NM_199439 NM_203400 XM_211983 XM_495909 XR_000254

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA