VIRsiRNAdb

Predicted off-targets seeds for siRNA "cauuuaccagcccgacgag" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :287.
Total Genes with multiple seed matches: 16.
Genes with at least one seed match: NM_000068 NM_000084 NM_000135 NM_000142 NM_000623 NM_000702 NM_000718 NM_000787 NM_000842 NM_000998 NM_001001549 NM_001001550 NM_001001555 NM_001001677 NM_001001716 NM_001002836 NM_001004355 NM_001006113 NM_001006656 NM_001006932 NM_001007466 NM_001010911 NM_001010925 NM_001010926 NM_001012393 NM_001012762 NM_001013404 NM_001013652 NM_001013726 NM_001017965 NM_001017998 NM_001018051 NM_001018095 NM_001018099 NM_001024608 NM_001025242 NM_001025243 NM_001050 NM_001100 NM_001119 NM_001220 NM_001394 NM_001408 NM_001569 NM_001858 NM_001894 NM_002038 NM_002501 NM_002545 NM_002699 NM_003106 NM_003206 NM_003238 NM_003347 NM_003392 NM_003407 NM_003687 NM_003778 NM_003808 NM_003924 NM_003983 NM_004125 NM_004276 NM_004414 NM_004417 NM_004834 NM_004895 NM_004915 NM_004936 NM_005311 NM_005455 NM_005491 NM_005599 NM_005828 NM_005883 NM_006044 NM_006091 NM_006176 NM_006229 NM_006276 NM_006465 NM_006538 NM_006673 NM_006687 NM_006855 NM_006947 NM_007262 NM_009588 NM_013252 NM_013282 NM_013301 NM_013372 NM_014016 NM_014189 NM_014190 NM_014405 NM_014587 NM_014667 NM_014801 NM_014812 NM_014872 NM_014919 NM_014988 NM_015025 NM_015085 NM_015116 NM_015318 NM_015330 NM_015417 NM_015428 NM_015438 NM_015831 NM_015949 NM_016270 NM_016436 NM_016547 NM_016611 NM_016735 NM_016818 NM_017495 NM_017565 NM_017728 NM_017748 NM_017968 NM_017994 NM_018036 NM_018450 NM_020122 NM_020245 NM_020673 NM_020782 NM_020933 NM_021135 NM_021149 NM_021164 NM_022062 NM_022872 NM_022873 NM_022965 NM_023005 NM_023067 NM_024109 NM_024866 NM_024974 NM_025245 NM_025251 NM_030582 NM_030630 NM_030655 NM_030966 NM_031205 NM_031309 NM_031484 NM_032046 NM_032108 NM_032408 NM_032575 NM_032740 NM_032808 NM_032853 NM_032883 NM_032899 NM_033661 NM_048368 NM_052919 NM_052960 NM_052963 NM_053029 NM_057158 NM_057177 NM_058172 NM_078487 NM_078628 NM_080625 NM_080738 NM_080928 NM_130444 NM_130445 NM_133332 NM_133333 NM_138499 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138795 NM_138998 NM_144717 NM_144962 NM_145166 NM_145187 NM_145188 NM_145189 NM_145190 NM_145323 NM_145324 NM_145646 NM_145686 NM_145687 NM_145807 NM_145861 NM_147160 NM_152221 NM_152451 NM_152608 NM_152831 NM_152854 NM_153040 NM_153620 NM_171982 NM_172078 NM_172079 NM_172080 NM_172081 NM_172082 NM_172083 NM_172084 NM_172087 NM_172088 NM_172089 NM_173795 NM_175062 NM_175063 NM_175895 NM_175923 NM_176801 NM_178225 NM_178226 NM_182499 NM_182637 NM_182638 NM_182812 NM_183395 NM_183414 NM_183425 NM_194290 NM_194295 NM_194352 NM_198157 NM_198452 NM_199045 NM_199131 NM_199141 NM_199206 NM_199513 NM_201260 NM_201261 NM_201397 NM_203350 NM_203417 NM_203418 NM_206538 NM_207003 NM_207174 NM_207438 NM_207627 NM_207628 NM_207629 NM_207630 NM_212543 XM_059482 XM_059689 XM_084529 XM_211367 XM_291154 XM_370849 XM_371340 XM_373561 XM_374842 XM_375029 XM_378329 XM_378617 XM_378620 XM_378628 XM_378798 XM_378835 XM_379434 XM_379668 XM_498451 XM_498563 XM_499581 XR_000216 XR_000268 XR_000272	Genes with multiple seed matches: NM_001001677 NM_014801 NM_014919 NM_015116 NM_016270 NM_017968 NM_024109 NM_053029 NM_080625 NM_133332 NM_133333 NM_178225 NM_178226 XM_291154 XM_378628 XM_378835

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA