VIRsiRNAdb

Predicted off-targets seeds for siRNA "gcaacaguuacugcgacgu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :360.
Total Genes with multiple seed matches: 13.
Genes with at least one seed match: NM_000142 NM_000157 NM_000219 NM_000278 NM_000719 NM_000787 NM_001001188 NM_001001502 NM_001001586 NM_001001677 NM_001001690 NM_001001890 NM_001002836 NM_001002861 NM_001003676 NM_001003677 NM_001004336 NM_001005463 NM_001005611 NM_001005741 NM_001005742 NM_001005749 NM_001005750 NM_001008563 NM_001009820 NM_001010911 NM_001010925 NM_001012964 NM_001012965 NM_001012966 NM_001013652 NM_001013673 NM_001013707 NM_001013723 NM_001013726 NM_001014440 NM_001017965 NM_001017995 NM_001024455 NM_001024843 NM_001038 NM_001049 NM_001174 NM_001277 NM_001408 NM_001420 NM_001451 NM_001534 NM_001547 NM_001606 NM_001754 NM_001893 NM_001896 NM_001961 NM_001967 NM_002052 NM_002071 NM_002077 NM_002152 NM_002167 NM_002228 NM_002249 NM_002498 NM_002558 NM_002648 NM_002712 NM_002774 NM_002969 NM_003045 NM_003085 NM_003106 NM_003150 NM_003216 NM_003502 NM_003573 NM_003648 NM_003660 NM_003683 NM_003687 NM_003751 NM_003778 NM_003820 NM_003924 NM_003938 NM_003950 NM_003987 NM_003988 NM_003989 NM_003990 NM_004164 NM_004287 NM_004321 NM_004414 NM_004438 NM_004834 NM_004936 NM_004997 NM_005380 NM_005461 NM_005491 NM_005545 NM_005599 NM_006026 NM_006037 NM_006044 NM_006132 NM_006176 NM_006229 NM_006378 NM_006387 NM_006505 NM_006610 NM_006645 NM_006651 NM_006676 NM_006687 NM_006822 NM_007174 NM_007262 NM_012146 NM_012156 NM_012407 NM_013275 NM_013301 NM_013373 NM_013397 NM_014016 NM_014388 NM_014417 NM_014480 NM_014578 NM_014634 NM_014759 NM_014770 NM_014772 NM_014792 NM_014801 NM_014914 NM_014948 NM_014988 NM_015080 NM_015088 NM_015155 NM_015286 NM_015318 NM_015381 NM_015417 NM_015686 NM_015894 NM_015980 NM_016170 NM_016263 NM_017495 NM_017728 NM_017891 NM_017968 NM_017993 NM_018209 NM_018316 NM_018702 NM_018951 NM_018959 NM_019100 NM_020132 NM_020142 NM_020378 NM_020445 NM_020807 NM_020851 NM_020896 NM_020899 NM_020933 NM_021008 NM_021064 NM_021149 NM_021267 NM_021625 NM_022078 NM_022114 NM_022449 NM_022822 NM_022965 NM_023067 NM_023936 NM_023937 NM_024113 NM_024676 NM_024832 NM_024875 NM_024886 NM_024986 NM_025040 NM_025251 NM_030582 NM_030662 NM_030665 NM_030798 NM_031484 NM_031913 NM_032042 NM_032108 NM_032109 NM_032262 NM_032281 NM_032374 NM_032622 NM_032625 NM_032646 NM_032740 NM_032758 NM_032770 NM_032777 NM_032800 NM_032809 NM_032818 NM_032837 NM_032883 NM_033064 NM_033207 NM_033386 NM_033640 NM_052869 NM_052941 NM_052960 NM_052966 NM_052988 NM_078487 NM_080625 NM_130444 NM_130445 NM_134269 NM_138348 NM_138732 NM_138734 NM_138983 NM_139062 NM_139276 NM_139284 NM_144640 NM_144717 NM_145035 NM_145064 NM_145313 NM_145638 NM_145686 NM_145687 NM_145728 NM_147192 NM_147204 NM_152335 NM_152341 NM_152519 NM_152720 NM_152879 NM_153335 NM_153482 NM_153715 NM_170711 NM_170782 NM_172225 NM_173588 NM_173599 NM_173677 NM_174911 NM_175062 NM_175609 NM_175895 NM_175898 NM_175901 NM_175922 NM_177978 NM_177979 NM_177996 NM_178225 NM_178226 NM_178516 NM_178519 NM_178569 NM_178831 NM_181041 NM_181050 NM_182499 NM_182501 NM_182503 NM_182533 NM_182712 NM_182744 NM_182978 NM_183425 NM_194295 NM_194309 NM_198457 NM_198490 NM_198526 NM_198547 NM_199415 NM_199454 NM_201397 NM_201526 NM_203417 NM_203418 NM_207348 NM_207370 NM_207380 NM_207462 NM_212469 NM_212533 NM_212543 NM_213662 XM_032996 XM_050278 XM_051017 XM_084529 XM_117408 XM_291154 XM_294910 XM_370603 XM_370758 XM_371074 XM_371486 XM_373561 XM_374141 XM_374249 XM_374270 XM_374842 XM_375292 XM_375373 XM_375606 XM_376454 XM_376586 XM_378456 XM_378491 XM_378835 XM_378914 XM_378970 XM_378981 XM_379171 XM_379381 XM_379434 XM_379459 XM_379635 XM_379798 XM_496981 XM_498491 XM_498507 XM_498563 XM_498607 XM_498617 XM_498626 XM_498649 XM_498742 XM_498746 XM_498801 XM_498817 XM_498919 XM_499003 XM_499093 XR_000184 XR_000268 XR_000294	Genes with multiple seed matches: NM_000719 NM_000787 NM_001001188 NM_001009820 NM_001013726 NM_017968 NM_025251 NM_032740 NM_078487 NM_178516 XM_051017 XM_498649 XM_499093

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA