VIRsiRNAdb

Predicted off-targets seeds for siRNA "uacagacauggugcgaaga" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :965.
Total Genes with multiple seed matches: 49.
Genes with at least one seed match: NM_000101 NM_000136 NM_000191 NM_000250 NM_000268 NM_000310 NM_000311 NM_000335 NM_000346 NM_000368 NM_000405 NM_000411 NM_000427 NM_000437 NM_000564 NM_000604 NM_000611 NM_000632 NM_000633 NM_000793 NM_000832 NM_000885 NM_000934 NM_000958 NM_001001132 NM_001001336 NM_001001344 NM_001001411 NM_001001677 NM_001001788 NM_001002762 NM_001003406 NM_001003937 NM_001004307 NM_001004327 NM_001004328 NM_001004355 NM_001005303 NM_001005407 NM_001005463 NM_001006605 NM_001006641 NM_001006642 NM_001006643 NM_001007023 NM_001007269 NM_001007270 NM_001008234 NM_001008408 NM_001008537 NM_001008895 NM_001009553 NM_001009610 NM_001009820 NM_001009877 NM_001009939 NM_001009956 NM_001009960 NM_001010924 NM_001010938 NM_001010984 NM_001011513 NM_001011514 NM_001011713 NM_001011880 NM_001012508 NM_001012626 NM_001012706 NM_001012968 NM_001012981 NM_001012993 NM_001013633 NM_001013640 NM_001013675 NM_001013687 NM_001013708 NM_001013746 NM_001014380 NM_001017405 NM_001017421 NM_001017919 NM_001017989 NM_001018050 NM_001018051 NM_001018052 NM_001018054 NM_001024401 NM_001024631 NM_001024808 NM_001024843 NM_001024844 NM_001035 NM_001036 NM_001066 NM_001089 NM_001102 NM_001116 NM_001130 NM_001167 NM_001188 NM_001305 NM_001310 NM_001323 NM_001427 NM_001497 NM_001534 NM_001538 NM_001552 NM_001563 NM_001570 NM_001609 NM_001649 NM_001659 NM_001715 NM_001752 NM_001761 NM_001773 NM_001896 NM_001946 NM_001970 NM_002034 NM_002088 NM_002099 NM_002111 NM_002133 NM_002142 NM_002167 NM_002223 NM_002231 NM_002247 NM_002249 NM_002359 NM_002372 NM_002378 NM_002389 NM_002430 NM_002501 NM_002599 NM_002665 NM_002688 NM_002699 NM_002719 NM_002730 NM_002760 NM_002843 NM_002858 NM_002980 NM_003030 NM_003055 NM_003108 NM_003173 NM_003236 NM_003281 NM_003330 NM_003371 NM_003377 NM_003382 NM_003441 NM_003505 NM_003549 NM_003575 NM_003589 NM_003600 NM_003658 NM_003674 NM_003681 NM_003790 NM_003824 NM_003828 NM_003840 NM_003867 NM_003873 NM_003876 NM_003885 NM_003904 NM_003913 NM_003918 NM_003926 NM_003955 NM_003983 NM_004093 NM_004098 NM_004154 NM_004165 NM_004166 NM_004167 NM_004200 NM_004263 NM_004273 NM_004274 NM_004332 NM_004352 NM_004357 NM_004397 NM_004412 NM_004472 NM_004473 NM_004474 NM_004496 NM_004553 NM_004565 NM_004566 NM_004595 NM_004612 NM_004621 NM_004622 NM_004625 NM_004631 NM_004683 NM_004719 NM_004730 NM_004742 NM_004753 NM_004791 NM_004805 NM_004809 NM_004848 NM_004850 NM_004921 NM_004937 NM_005050 NM_005063 NM_005065 NM_005069 NM_005076 NM_005106 NM_005130 NM_005187 NM_005324 NM_005384 NM_005446 NM_005599 NM_005647 NM_005656 NM_005678 NM_005688 NM_005737 NM_005781 NM_005821 NM_005840 NM_005862 NM_005882 NM_005883 NM_005889 NM_005902 NM_005933 NM_005937 NM_005986 NM_006020 NM_006033 NM_006037 NM_006048 NM_006116 NM_006206 NM_006259 NM_006367 NM_006371 NM_006373 NM_006387 NM_006457 NM_006486 NM_006504 NM_006520 NM_006546 NM_006606 NM_006609 NM_006613 NM_006665 NM_006738 NM_006773 NM_006775 NM_006795 NM_006823 NM_006884 NM_006925 NM_006943 NM_006990 NM_006992 NM_007039 NM_007111 NM_007182 NM_007197 NM_007200 NM_007231 NM_007335 NM_007336 NM_007337 NM_007338 NM_007371 NM_009589 NM_012089 NM_012218 NM_012287 NM_012288 NM_012309 NM_012429 NM_012434 NM_012448 NM_013397 NM_013400 NM_013937 NM_013989 NM_014033 NM_014141 NM_014231 NM_014301 NM_014374 NM_014383 NM_014388 NM_014392 NM_014397 NM_014411 NM_014445 NM_014474 NM_014555 NM_014569 NM_014631 NM_014634 NM_014636 NM_014642 NM_014665 NM_014746 NM_014804 NM_014851 NM_014854 NM_014864 NM_014869 NM_014874 NM_014905 NM_014906 NM_014913 NM_014914 NM_014935 NM_014951 NM_015027 NM_015035 NM_015044 NM_015085 NM_015088 NM_015092 NM_015101 NM_015113 NM_015116 NM_015124 NM_015138 NM_015144 NM_015149 NM_015178 NM_015193 NM_015227 NM_015253 NM_015254 NM_015266 NM_015267 NM_015321 NM_015332 NM_015375 NM_015545 NM_015560 NM_015585 NM_015651 NM_015833 NM_015834 NM_015850 NM_015928 NM_015993 NM_016082 NM_016138 NM_016170 NM_016173 NM_016220 NM_016358 NM_016408 NM_016418 NM_016463 NM_016464 NM_016479 NM_016490 NM_016505 NM_016534 NM_016540 NM_016575 NM_016591 NM_016592 NM_016611 NM_017409 NM_017418 NM_017451 NM_017522 NM_017588 NM_017614 NM_017622 NM_017626 NM_017631 NM_017668 NM_017681 NM_017723 NM_017821 NM_017841 NM_017891 NM_017896 NM_017939 NM_017993 NM_017999 NM_018014 NM_018019 NM_018023 NM_018069 NM_018101 NM_018109 NM_018168 NM_018180 NM_018210 NM_018440 NM_018489 NM_018607 NM_018660 NM_018667 NM_018711 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_019016 NM_019035 NM_019845 NM_020038 NM_020062 NM_020063 NM_020151 NM_020193 NM_020210 NM_020241 NM_020323 NM_020324 NM_020325 NM_020326 NM_020337 NM_020348 NM_020429 NM_020647 NM_020698 NM_020777 NM_020795 NM_020796 NM_020825 NM_020851 NM_020971 NM_020993 NM_020996 NM_020999 NM_021096 NM_021098 NM_021154 NM_021215 NM_021255 NM_021570 NM_021638 NM_021817 NM_021823 NM_021830 NM_021907 NM_021943 NM_021949 NM_021953 NM_022049 NM_022054 NM_022081 NM_022150 NM_022349 NM_022468 NM_022469 NM_022652 NM_022718 NM_022766 NM_022773 NM_022898 NM_023080 NM_023105 NM_023106 NM_023109 NM_023111 NM_023924 NM_024015 NM_024025 NM_024026 NM_024319 NM_024325 NM_024408 NM_024595 NM_024602 NM_024699 NM_024707 NM_024736 NM_024757 NM_024773 NM_024869 NM_024891 NM_024919 NM_024989 NM_025021 NM_025181 NM_025203 NM_025204 NM_025213 NM_030569 NM_030576 NM_030753 NM_030793 NM_030882 NM_030928 NM_030940 NM_030943 NM_030961 NM_030964 NM_031283 NM_031411 NM_031431 NM_031484 NM_031849 NM_031857 NM_031860 NM_031866 NM_031886 NM_031891 NM_031897 NM_031945 NM_032017 NM_032037 NM_032042 NM_032108 NM_032116 NM_032251 NM_032262 NM_032268 NM_032276 NM_032301 NM_032357 NM_032432 NM_032445 NM_032569 NM_032644 NM_032646 NM_032711 NM_032737 NM_032740 NM_032800 NM_032817 NM_032854 NM_032856 NM_032862 NM_032932 NM_032962 NM_032963 NM_032964 NM_033085 NM_033090 NM_033131 NM_033147 NM_033148 NM_033229 NM_033260 NM_033274 NM_033285 NM_033300 NM_033397 NM_033410 NM_033421 NM_033449 NM_033467 NM_033514 NM_033543 NM_033544 NM_033626 NM_033656 NM_052821 NM_052848 NM_052869 NM_052901 NM_052917 NM_052926 NM_052934 NM_052987 NM_052988 NM_054033 NM_058169 NM_058179 NM_078483 NM_080625 NM_080792 NM_130435 NM_130469 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_130848 NM_133327 NM_133448 NM_134268 NM_134325 NM_134422 NM_134423 NM_134424 NM_138338 NM_138348 NM_138440 NM_138494 NM_138553 NM_138559 NM_138576 NM_138640 NM_138793 NM_138962 NM_138969 NM_139021 NM_139030 NM_139125 NM_139167 NM_139201 NM_139267 NM_139354 NM_139355 NM_144577 NM_144586 NM_144607 NM_144692 NM_144710 NM_144767 NM_144964 NM_144994 NM_145023 NM_145048 NM_145102 NM_145278 NM_145285 NM_145291 NM_145637 NM_145654 NM_145763 NM_145814 NM_145815 NM_145818 NM_147202 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148971 NM_148972 NM_148973 NM_148974 NM_152280 NM_152371 NM_152462 NM_152480 NM_152507 NM_152547 NM_152569 NM_152574 NM_152607 NM_152619 NM_152641 NM_152678 NM_152686 NM_152698 NM_152731 NM_152840 NM_152841 NM_152842 NM_152843 NM_152869 NM_153029 NM_153031 NM_153207 NM_153237 NM_153238 NM_153246 NM_153345 NM_153451 NM_153608 NM_153619 NM_153757 NM_153812 NM_153825 NM_153826 NM_170601 NM_170712 NM_170713 NM_170714 NM_170715 NM_170716 NM_170717 NM_170782 NM_172234 NM_172247 NM_172248 NM_172249 NM_172318 NM_172350 NM_172351 NM_172352 NM_172353 NM_172354 NM_172355 NM_172356 NM_172357 NM_172358 NM_172359 NM_172360 NM_172361 NM_173065 NM_173463 NM_173483 NM_173669 NM_173677 NM_173728 NM_173800 NM_173804 NM_174911 NM_174939 NM_175726 NM_175736 NM_175747 NM_175866 NM_175884 NM_175885 NM_175900 NM_175931 NM_176081 NM_176083 NM_176084 NM_176085 NM_176086 NM_176789 NM_177963 NM_178004 NM_178013 NM_178134 NM_178516 NM_178532 NM_178557 NM_178584 NM_178586 NM_178835 NM_178836 NM_178864 NM_181336 NM_181349 NM_181484 NM_181491 NM_181534 NM_181774 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181839 NM_181862 NM_181863 NM_182481 NM_182482 NM_182484 NM_182509 NM_182540 NM_182578 NM_182619 NM_182729 NM_182742 NM_182743 NM_182831 NM_183079 NM_183360 NM_183361 NM_183416 NM_184042 NM_194290 NM_194303 NM_198056 NM_198147 NM_198396 NM_198433 NM_198434 NM_198435 NM_198436 NM_198437 NM_198442 NM_198445 NM_198482 NM_198483 NM_198595 NM_198851 NM_198900 NM_198925 NM_198969 NM_198970 NM_199045 NM_199131 NM_199245 NM_199265 NM_199296 NM_199348 NM_199350 NM_199461 NM_199462 NM_201565 NM_201594 NM_201650 NM_202002 NM_202003 NM_203306 NM_203329 NM_203330 NM_203331 NM_203382 NM_203397 NM_203446 NM_205836 NM_207106 NM_207367 NM_207385 NM_207468 NM_207473 NM_207518 NM_213595 NM_213596 NM_213605 NM_213612 XM_032278 XM_035601 XM_042698 XM_047995 XM_051017 XM_084467 XM_166320 XM_171054 XM_208847 XM_211367 XM_290547 XM_290842 XM_295155 XM_370838 XM_370849 XM_370879 XM_370928 XM_371081 XM_371249 XM_371741 XM_372028 XM_372030 XM_372193 XM_372194 XM_373669 XM_373692 XM_373704 XM_373737 XM_373786 XM_373810 XM_374001 XM_374110 XM_374115 XM_374270 XM_375669 XM_376018 XM_376062 XM_376165 XM_376350 XM_376727 XM_376795 XM_377002 XM_378178 XM_378203 XM_378273 XM_378279 XM_378329 XM_378331 XM_378358 XM_378368 XM_378487 XM_378617 XM_378684 XM_378730 XM_378758 XM_378843 XM_378914 XM_378964 XM_379075 XM_379097 XM_379114 XM_379123 XM_379146 XM_379273 XM_379295 XM_379336 XM_379363 XM_379452 XM_379510 XM_379543 XM_379636 XM_379656 XM_379809 XM_379979 XM_495844 XM_496328 XM_496519 XM_496637 XM_496876 XM_496877 XM_496948 XM_496949 XM_496951 XM_496952 XM_496953 XM_496954 XM_496955 XM_496956 XM_496957 XM_496961 XM_498460 XM_498494 XM_498508 XM_498511 XM_498587 XM_498609 XM_498623 XM_498649 XM_498687 XM_498693 XM_498727 XM_498739 XM_498824 XM_498825 XM_498857 XM_498884 XM_498904 XM_498917 XM_499047 XM_499065 XM_499093 XM_499276 XM_499293 XM_499515 XM_499590 XR_000167 XR_000266	Genes with multiple seed matches: NM_001006641 NM_001006642 NM_001006643 NM_001009553 NM_001009877 NM_001012626 NM_001013708 NM_002699 NM_005821 NM_005883 NM_006387 NM_012429 NM_014411 NM_015178 NM_015253 NM_015545 NM_017841 NM_018023 NM_018667 NM_018711 NM_019845 NM_020851 NM_021943 NM_023924 NM_024736 NM_030943 NM_032042 NM_032108 NM_032251 NM_033229 NM_052901 NM_138640 NM_147202 NM_152371 NM_152842 NM_153029 NM_181491 NM_181826 NM_181827 NM_199461 XM_373786 XM_378273 XM_378329 XM_378758 XM_378843 XM_379273 XM_379363 XM_498494 XM_498687

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA