VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"ccggccaacuacuucgaaa"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1060
.
Total Genes with multiple seed matches:
80
.
Genes with at least one seed match:
NM_000115 NM_000182 NM_000192 NM_000208 NM_000220 NM_000254 NM_000262 NM_000267 NM_000305 NM_000334 NM_000337 NM_000406 NM_000439 NM_000508 NM_000525 NM_000555 NM_000594 NM_000599 NM_000609 NM_000610 NM_000633 NM_000635 NM_000641 NM_000664 NM_000685 NM_000750 NM_000786 NM_000793 NM_000798 NM_000800 NM_000815 NM_000844 NM_000867 NM_000876 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001001484 NM_001001664 NM_001001677 NM_001001686 NM_001001687 NM_001001689 NM_001001873 NM_001001891 NM_001002799 NM_001003407 NM_001003408 NM_001003795 NM_001004298 NM_001004300 NM_001004326 NM_001004330 NM_001004333 NM_001004351 NM_001004416 NM_001004417 NM_001004421 NM_001004422 NM_001005386 NM_001005474 NM_001006605 NM_001007023 NM_001007176 NM_001007278 NM_001007546 NM_001008215 NM_001008390 NM_001008541 NM_001008727 NM_001008781 NM_001009566 NM_001009913 NM_001010888 NM_001010890 NM_001010914 NM_001012753 NM_001012763 NM_001012970 NM_001012982 NM_001013629 NM_001013649 NM_001013675 NM_001013681 NM_001013698 NM_001013712 NM_001014380 NM_001014446 NM_001015892 NM_001018067 NM_001018068 NM_001018069 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018096 NM_001018097 NM_001018098 NM_001018099 NM_001018102 NM_001018161 NM_001023563 NM_001024463 NM_001024631 NM_001024683 NM_001025100 NM_001039 NM_001049 NM_001100 NM_001146 NM_001167 NM_001174 NM_001189 NM_001198 NM_001226 NM_001362 NM_001387 NM_001390 NM_001394 NM_001415 NM_001422 NM_001430 NM_001461 NM_001530 NM_001554 NM_001609 NM_001614 NM_001638 NM_001715 NM_001733 NM_001759 NM_001767 NM_001806 NM_001821 NM_001879 NM_001901 NM_001955 NM_001969 NM_002006 NM_002026 NM_002035 NM_002052 NM_002099 NM_002126 NM_002163 NM_002188 NM_002243 NM_002264 NM_002298 NM_002313 NM_002390 NM_002442 NM_002507 NM_002577 NM_002612 NM_002628 NM_002666 NM_002699 NM_002716 NM_002725 NM_002760 NM_002814 NM_002819 NM_002853 NM_002858 NM_002906 NM_002928 NM_002938 NM_002941 NM_002945 NM_002957 NM_002959 NM_002998 NM_003002 NM_003011 NM_003032 NM_003038 NM_003045 NM_003047 NM_003070 NM_003090 NM_003187 NM_003216 NM_003234 NM_003241 NM_003281 NM_003340 NM_003342 NM_003369 NM_003379 NM_003409 NM_003411 NM_003438 NM_003473 NM_003479 NM_003489 NM_003605 NM_003613 NM_003624 NM_003632 NM_003644 NM_003663 NM_003679 NM_003681 NM_003774 NM_003783 NM_003846 NM_003855 NM_003869 NM_003917 NM_003929 NM_003947 NM_003953 NM_004035 NM_004056 NM_004060 NM_004080 NM_004172 NM_004200 NM_004233 NM_004253 NM_004268 NM_004293 NM_004304 NM_004318 NM_004337 NM_004361 NM_004378 NM_004431 NM_004436 NM_004481 NM_004484 NM_004536 NM_004549 NM_004586 NM_004590 NM_004612 NM_004619 NM_004627 NM_004697 NM_004737 NM_004745 NM_004795 NM_004796 NM_004821 NM_004835 NM_004843 NM_004859 NM_004887 NM_004913 NM_004921 NM_004936 NM_004993 NM_004999 NM_005026 NM_005057 NM_005065 NM_005077 NM_005194 NM_005204 NM_005259 NM_005333 NM_005335 NM_005358 NM_005399 NM_005416 NM_005433 NM_005436 NM_005442 NM_005511 NM_005542 NM_005562 NM_005578 NM_005593 NM_005658 NM_005668 NM_005671 NM_005722 NM_005737 NM_005739 NM_005783 NM_005798 NM_005840 NM_005876 NM_005895 NM_005902 NM_005906 NM_005924 NM_005962 NM_006000 NM_006016 NM_006052 NM_006065 NM_006079 NM_006094 NM_006107 NM_006129 NM_006139 NM_006154 NM_006162 NM_006259 NM_006283 NM_006313 NM_006329 NM_006330 NM_006353 NM_006371 NM_006387 NM_006393 NM_006413 NM_006419 NM_006492 NM_006504 NM_006534 NM_006587 NM_006599 NM_006622 NM_006684 NM_006720 NM_006731 NM_006822 NM_006853 NM_006888 NM_006899 NM_006902 NM_006905 NM_006952 NM_006981 NM_006990 NM_007036 NM_007083 NM_007255 NM_007292 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_007322 NM_009585 NM_012081 NM_012097 NM_012153 NM_012158 NM_012215 NM_012288 NM_012321 NM_012345 NM_012471 NM_013231 NM_013238 NM_013262 NM_013347 NM_013374 NM_013423 NM_013427 NM_013435 NM_013989 NM_014005 NM_014023 NM_014035 NM_014048 NM_014057 NM_014077 NM_014141 NM_014231 NM_014246 NM_014280 NM_014293 NM_014331 NM_014360 NM_014388 NM_014432 NM_014435 NM_014451 NM_014507 NM_014606 NM_014612 NM_014659 NM_014704 NM_014734 NM_014743 NM_014789 NM_014797 NM_014801 NM_014805 NM_014811 NM_014829 NM_014854 NM_014864 NM_014865 NM_014867 NM_014880 NM_014888 NM_014899 NM_014904 NM_014910 NM_014917 NM_014918 NM_014934 NM_014944 NM_014952 NM_014974 NM_015027 NM_015087 NM_015097 NM_015115 NM_015192 NM_015208 NM_015215 NM_015234 NM_015252 NM_015291 NM_015313 NM_015367 NM_015397 NM_015532 NM_015557 NM_015560 NM_015635 NM_015640 NM_015675 NM_015711 NM_015892 NM_016093 NM_016119 NM_016122 NM_016144 NM_016173 NM_016206 NM_016235 NM_016252 NM_016298 NM_016389 NM_016407 NM_016412 NM_016424 NM_016427 NM_016472 NM_016607 NM_016611 NM_016937 NM_017433 NM_017437 NM_017523 NM_017551 NM_017772 NM_017778 NM_017928 NM_017929 NM_017933 NM_017968 NM_017977 NM_018015 NM_018057 NM_018108 NM_018179 NM_018204 NM_018243 NM_018246 NM_018247 NM_018254 NM_018266 NM_018303 NM_018307 NM_018308 NM_018325 NM_018327 NM_018371 NM_018450 NM_018476 NM_018498 NM_018555 NM_018602 NM_018670 NM_018685 NM_018933 NM_018976 NM_019080 NM_019094 NM_019556 NM_019601 NM_019604 NM_019842 NM_019844 NM_020135 NM_020184 NM_020215 NM_020309 NM_020403 NM_020407 NM_020429 NM_020438 NM_020651 NM_020657 NM_020674 NM_020727 NM_020802 NM_020803 NM_020826 NM_020857 NM_020909 NM_020947 NM_020956 NM_020958 NM_020962 NM_021020 NM_021070 NM_021079 NM_021116 NM_021127 NM_021153 NM_021215 NM_021242 NM_021251 NM_021612 NM_021777 NM_021825 NM_021999 NM_022050 NM_022071 NM_022105 NM_022121 NM_022131 NM_022133 NM_022151 NM_022336 NM_022351 NM_022469 NM_022564 NM_022716 NM_022753 NM_022803 NM_022902 NM_022905 NM_023032 NM_023083 NM_023084 NM_023085 NM_023086 NM_023087 NM_023088 NM_023923 NM_023937 NM_024025 NM_024043 NM_024076 NM_024086 NM_024090 NM_024094 NM_024095 NM_024335 NM_024416 NM_024533 NM_024557 NM_024569 NM_024612 NM_024614 NM_024615 NM_024646 NM_024647 NM_024657 NM_024667 NM_024670 NM_024701 NM_024738 NM_024753 NM_024786 NM_024813 NM_024835 NM_024881 NM_024891 NM_024935 NM_024938 NM_024997 NM_025169 NM_025176 NM_025195 NM_025208 NM_025218 NM_025243 NM_030625 NM_030660 NM_030664 NM_030772 NM_030780 NM_030817 NM_030883 NM_030891 NM_030930 NM_030961 NM_031417 NM_031419 NM_031438 NM_031453 NM_031481 NM_031850 NM_031990 NM_031991 NM_032012 NM_032042 NM_032049 NM_032116 NM_032328 NM_032367 NM_032374 NM_032423 NM_032446 NM_032486 NM_032546 NM_032603 NM_032682 NM_032710 NM_032740 NM_032834 NM_032920 NM_032927 NM_032975 NM_032980 NM_032988 NM_032992 NM_033014 NM_033031 NM_033083 NM_033103 NM_033133 NM_033135 NM_033136 NM_033137 NM_033188 NM_033360 NM_033425 NM_033646 NM_033658 NM_033670 NM_033671 NM_052811 NM_052851 NM_052859 NM_052905 NM_052910 NM_052995 NM_053024 NM_053042 NM_054027 NM_054031 NM_057158 NM_058163 NM_058172 NM_058178 NM_058182 NM_078487 NM_080545 NM_080605 NM_080654 NM_080717 NM_080733 NM_080796 NM_080797 NM_080832 NM_080872 NM_080928 NM_130395 NM_130435 NM_130439 NM_130466 NM_130771 NM_130809 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_133168 NM_133169 NM_133259 NM_133282 NM_133377 NM_133474 NM_133493 NM_133631 NM_133642 NM_134324 NM_134433 NM_138298 NM_138337 NM_138342 NM_138429 NM_138450 NM_138492 NM_138566 NM_138636 NM_138713 NM_138714 NM_138970 NM_138983 NM_139025 NM_139026 NM_139027 NM_139045 NM_139075 NM_139162 NM_139167 NM_144589 NM_144597 NM_144607 NM_144621 NM_144714 NM_144726 NM_144947 NM_144974 NM_144996 NM_145013 NM_145014 NM_145253 NM_145263 NM_145271 NM_145291 NM_145297 NM_145693 NM_145735 NM_145759 NM_147134 NM_148171 NM_148886 NM_148960 NM_152225 NM_152280 NM_152356 NM_152357 NM_152376 NM_152398 NM_152418 NM_152422 NM_152451 NM_152460 NM_152461 NM_152495 NM_152583 NM_152655 NM_152680 NM_152716 NM_152758 NM_152760 NM_152793 NM_152836 NM_152837 NM_152872 NM_152873 NM_152874 NM_152875 NM_152876 NM_152877 NM_152890 NM_153000 NM_153034 NM_153261 NM_153360 NM_153683 NM_153764 NM_153765 NM_153766 NM_153767 NM_153822 NM_153837 NM_170736 NM_170737 NM_170750 NM_172193 NM_172346 NM_172387 NM_172388 NM_172389 NM_173198 NM_173200 NM_173214 NM_173216 NM_173217 NM_173511 NM_173536 NM_173537 NM_173538 NM_173557 NM_173568 NM_173597 NM_173622 NM_173649 NM_173652 NM_173688 NM_173698 NM_173799 NM_173823 NM_174856 NM_174891 NM_174972 NM_175060 NM_175709 NM_175736 NM_175847 NM_175876 NM_175884 NM_175907 NM_175910 NM_175913 NM_176823 NM_177435 NM_177947 NM_177948 NM_177967 NM_177985 NM_177995 NM_178006 NM_178007 NM_178033 NM_178135 NM_178151 NM_178152 NM_178153 NM_178497 NM_178505 NM_178544 NM_178562 NM_178839 NM_178840 NM_180981 NM_181054 NM_181349 NM_181486 NM_181659 NM_181807 NM_181836 NM_181874 NM_181886 NM_181887 NM_181888 NM_181889 NM_181890 NM_181891 NM_181892 NM_181893 NM_182533 NM_182540 NM_182585 NM_182615 NM_182643 NM_182682 NM_182734 NM_182752 NM_182757 NM_182894 NM_182896 NM_182907 NM_182960 NM_183004 NM_183238 NM_183414 NM_183415 NM_187841 NM_194278 NM_194298 NM_194314 NM_194317 NM_198041 NM_198061 NM_198336 NM_198337 NM_198381 NM_198400 NM_198428 NM_198506 NM_198554 NM_198555 NM_198566 NM_198686 NM_198835 NM_198887 NM_198900 NM_198904 NM_198968 NM_198973 NM_199040 NM_199050 NM_199126 NM_199139 NM_199245 NM_199246 NM_199344 NM_199450 NM_201348 NM_201432 NM_201433 NM_201623 NM_201625 NM_203349 NM_203374 NM_203381 NM_203390 NM_203436 NM_203487 NM_205846 NM_205856 NM_206817 NM_206818 NM_206853 NM_206854 NM_206855 NM_207042 NM_207045 NM_207046 NM_207112 NM_207306 NM_207335 NM_207339 NM_207352 NM_207362 NM_207458 NM_207495 NM_207499 NM_207506 NM_212474 NM_212475 NM_212476 NM_212478 NM_212482 NM_213590 NM_213600 NM_213612 XM_031689 XM_032278 XM_044178 XM_044434 XM_046264 XM_087490 XM_166132 XM_166164 XM_173132 XM_209607 XM_209640 XM_211908 XM_290342 XM_291017 XM_291020 XM_291095 XM_291625 XM_294521 XM_350880 XM_370634 XM_370716 XM_371621 XM_371672 XM_371691 XM_371783 XM_371801 XM_371891 XM_371904 XM_373844 XM_373847 XM_373883 XM_374070 XM_374162 XM_374422 XM_375081 XM_375443 XM_375500 XM_375697 XM_375838 XM_376372 XM_376586 XM_376680 XM_377041 XM_377476 XM_377742 XM_378208 XM_378247 XM_378379 XM_378394 XM_378411 XM_378434 XM_378516 XM_378567 XM_378606 XM_378703 XM_378758 XM_378760 XM_378786 XM_378914 XM_378946 XM_378971 XM_378976 XM_379276 XM_379363 XM_379543 XM_379584 XM_379595 XM_379720 XM_379780 XM_379798 XM_379840 XM_379934 XM_496054 XM_496093 XM_498443 XM_498449 XM_498477 XM_498497 XM_498559 XM_498671 XM_498757 XM_498758 XM_498760 XM_498761 XM_498765 XM_498766 XM_498767 XM_498768 XM_498769 XM_498770 XM_498771 XM_498772 XM_498773 XM_498774 XM_498777 XM_498778 XM_498779 XM_498780 XM_498781 XM_498782 XM_498783 XM_498784 XM_498785 XM_498786 XM_498789 XM_498801 XM_498802 XM_498804 XM_498841 XM_498917 XM_498972 XM_499085 XM_499290 XM_499348 XM_499573 XM_499579 XR_000184 XR_000227 XR_000273 XR_000294
Genes with multiple seed matches:
NM_000254 NM_000664 NM_001003407 NM_001003408 NM_001007278 NM_001009913 NM_001012753 NM_001013681 NM_001014380 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001018102 NM_001174 NM_001362 NM_001609 NM_002313 NM_002716 NM_002959 NM_003644 NM_003774 NM_004481 NM_004745 NM_004795 NM_004921 NM_005065 NM_005436 NM_005542 NM_005798 NM_006720 NM_012471 NM_013423 NM_013427 NM_014246 NM_014280 NM_015215 NM_015532 NM_016144 NM_016407 NM_017968 NM_020727 NM_020956 NM_022105 NM_024076 NM_024090 NM_032116 NM_032374 NM_032486 NM_052811 NM_054027 NM_080796 NM_080797 NM_152376 NM_152460 NM_152461 NM_152716 NM_153683 NM_172346 NM_175907 NM_183414 NM_198336 NM_198337 NM_198555 NM_198835 NM_199344 NM_201432 NM_201433 NM_207458 NM_213590 XM_032278 XM_209607 XM_291095 XM_350880 XM_375697 XM_379780 XM_499085
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)