VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"ccagagggcagugugucgu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1027
.
Total Genes with multiple seed matches:
64
.
Genes with at least one seed match:
NM_000034 NM_000144 NM_000156 NM_000165 NM_000188 NM_000216 NM_000264 NM_000278 NM_000332 NM_000369 NM_000419 NM_000542 NM_000620 NM_000635 NM_000674 NM_000682 NM_000720 NM_000749 NM_000761 NM_000828 NM_000856 NM_000878 NM_000916 NM_000918 NM_000991 NM_001001412 NM_001001664 NM_001001665 NM_001001791 NM_001001928 NM_001001929 NM_001001930 NM_001002857 NM_001002858 NM_001003399 NM_001003406 NM_001003407 NM_001003408 NM_001003665 NM_001003674 NM_001003675 NM_001003716 NM_001003796 NM_001003800 NM_001004335 NM_001004419 NM_001004420 NM_001005387 NM_001005417 NM_001005753 NM_001006617 NM_001006619 NM_001006620 NM_001006621 NM_001006657 NM_001006932 NM_001007269 NM_001007270 NM_001007466 NM_001008539 NM_001008745 NM_001008917 NM_001008925 NM_001009610 NM_001009922 NM_001009936 NM_001010850 NM_001010871 NM_001010883 NM_001010938 NM_001011552 NM_001011703 NM_001011713 NM_001012329 NM_001012339 NM_001012614 NM_001012720 NM_001012722 NM_001012761 NM_001012982 NM_001013673 NM_001013675 NM_001013677 NM_001013678 NM_001013682 NM_001013699 NM_001013701 NM_001013713 NM_001013721 NM_001013723 NM_001013726 NM_001014437 NM_001014438 NM_001014794 NM_001014795 NM_001014839 NM_001014841 NM_001017919 NM_001017923 NM_001017925 NM_001018049 NM_001023587 NM_001024226 NM_001024227 NM_001024228 NM_001024669 NM_001024670 NM_001024671 NM_001024843 NM_001049 NM_001066 NM_001092 NM_001094 NM_001114 NM_001119 NM_001127 NM_001174 NM_001176 NM_001189 NM_001247 NM_001277 NM_001315 NM_001328 NM_001395 NM_001400 NM_001427 NM_001433 NM_001481 NM_001497 NM_001543 NM_001584 NM_001616 NM_001619 NM_001658 NM_001694 NM_001715 NM_001718 NM_001730 NM_001751 NM_001791 NM_001852 NM_001894 NM_001912 NM_001949 NM_001978 NM_001991 NM_002025 NM_002064 NM_002071 NM_002079 NM_002111 NM_002171 NM_002196 NM_002206 NM_002214 NM_002259 NM_002260 NM_002304 NM_002313 NM_002319 NM_002337 NM_002340 NM_002359 NM_002360 NM_002375 NM_002401 NM_002417 NM_002481 NM_002499 NM_002501 NM_002571 NM_002581 NM_002582 NM_002600 NM_002613 NM_002644 NM_002662 NM_002676 NM_002705 NM_002719 NM_002725 NM_002734 NM_002735 NM_002737 NM_002768 NM_002813 NM_002819 NM_002918 NM_002921 NM_002990 NM_003028 NM_003043 NM_003046 NM_003052 NM_003118 NM_003123 NM_003124 NM_003205 NM_003223 NM_003270 NM_003274 NM_003322 NM_003371 NM_003382 NM_003481 NM_003597 NM_003624 NM_003633 NM_003654 NM_003681 NM_003683 NM_003714 NM_003716 NM_003734 NM_003778 NM_003780 NM_003795 NM_003803 NM_003808 NM_003839 NM_003902 NM_003918 NM_003933 NM_003987 NM_003988 NM_003989 NM_003990 NM_004039 NM_004056 NM_004079 NM_004155 NM_004197 NM_004212 NM_004269 NM_004308 NM_004321 NM_004338 NM_004382 NM_004391 NM_004394 NM_004412 NM_004455 NM_004479 NM_004495 NM_004517 NM_004535 NM_004566 NM_004603 NM_004645 NM_004655 NM_004667 NM_004711 NM_004732 NM_004739 NM_004747 NM_004798 NM_004805 NM_004824 NM_004840 NM_004862 NM_004895 NM_004913 NM_004914 NM_004960 NM_005008 NM_005036 NM_005088 NM_005112 NM_005126 NM_005187 NM_005188 NM_005189 NM_005197 NM_005230 NM_005238 NM_005312 NM_005354 NM_005374 NM_005392 NM_005409 NM_005490 NM_005491 NM_005494 NM_005539 NM_005578 NM_005597 NM_005634 NM_005638 NM_005647 NM_005658 NM_005668 NM_005740 NM_005761 NM_005781 NM_005789 NM_005816 NM_005825 NM_005867 NM_005873 NM_005887 NM_005935 NM_005937 NM_005986 NM_006026 NM_006035 NM_006038 NM_006045 NM_006067 NM_006094 NM_006138 NM_006230 NM_006237 NM_006291 NM_006315 NM_006380 NM_006532 NM_006541 NM_006544 NM_006643 NM_006678 NM_006701 NM_006720 NM_006738 NM_006753 NM_006761 NM_006762 NM_006775 NM_006802 NM_006825 NM_006869 NM_006925 NM_006963 NM_006987 NM_006999 NM_007018 NM_007019 NM_007184 NM_007189 NM_007200 NM_007320 NM_007322 NM_007325 NM_007328 NM_007368 NM_007369 NM_012218 NM_012225 NM_012230 NM_012233 NM_012326 NM_012341 NM_012434 NM_012445 NM_013231 NM_013245 NM_013255 NM_013269 NM_013281 NM_013282 NM_013306 NM_013336 NM_013434 NM_013449 NM_014023 NM_014048 NM_014062 NM_014064 NM_014112 NM_014160 NM_014189 NM_014190 NM_014245 NM_014268 NM_014275 NM_014284 NM_014325 NM_014383 NM_014384 NM_014405 NM_014409 NM_014442 NM_014478 NM_014522 NM_014552 NM_014553 NM_014554 NM_014615 NM_014634 NM_014647 NM_014648 NM_014661 NM_014665 NM_014671 NM_014675 NM_014690 NM_014730 NM_014733 NM_014765 NM_014767 NM_014788 NM_014789 NM_014812 NM_014835 NM_014851 NM_014854 NM_014873 NM_014889 NM_014901 NM_014910 NM_014947 NM_014951 NM_014959 NM_014967 NM_014972 NM_014997 NM_015033 NM_015051 NM_015071 NM_015085 NM_015088 NM_015092 NM_015094 NM_015115 NM_015116 NM_015124 NM_015138 NM_015141 NM_015166 NM_015198 NM_015227 NM_015233 NM_015254 NM_015260 NM_015267 NM_015293 NM_015315 NM_015347 NM_015349 NM_015358 NM_015381 NM_015436 NM_015553 NM_015678 NM_015689 NM_015695 NM_015833 NM_015834 NM_015932 NM_015986 NM_016079 NM_016118 NM_016131 NM_016176 NM_016205 NM_016258 NM_016281 NM_016282 NM_016407 NM_016463 NM_016481 NM_016530 NM_016532 NM_016547 NM_016575 NM_016605 NM_016611 NM_016936 NM_017415 NM_017491 NM_017545 NM_017548 NM_017550 NM_017649 NM_017709 NM_017736 NM_017786 NM_017789 NM_017798 NM_017810 NM_017869 NM_017952 NM_017980 NM_017990 NM_017991 NM_018043 NM_018069 NM_018121 NM_018133 NM_018150 NM_018210 NM_018238 NM_018320 NM_018436 NM_018441 NM_018553 NM_018602 NM_018715 NM_018717 NM_018728 NM_018941 NM_018945 NM_018947 NM_018959 NM_018986 NM_018992 NM_019000 NM_019009 NM_019034 NM_019081 NM_019098 NM_019106 NM_019597 NM_020148 NM_020245 NM_020248 NM_020311 NM_020379 NM_020405 NM_020416 NM_020429 NM_020463 NM_020533 NM_020648 NM_020698 NM_020714 NM_020728 NM_020755 NM_020779 NM_020796 NM_020800 NM_020820 NM_020851 NM_020886 NM_020927 NM_020940 NM_020956 NM_020981 NM_021005 NM_021096 NM_021116 NM_021135 NM_021138 NM_021158 NM_021239 NM_021260 NM_021619 NM_021632 NM_021812 NM_021814 NM_021936 NM_021945 NM_021962 NM_022062 NM_022063 NM_022085 NM_022114 NM_022308 NM_022336 NM_022338 NM_022463 NM_022473 NM_022758 NM_022764 NM_023011 NM_024100 NM_024117 NM_024294 NM_024329 NM_024342 NM_024490 NM_024496 NM_024509 NM_024517 NM_024589 NM_024600 NM_024605 NM_024618 NM_024630 NM_024670 NM_024674 NM_024676 NM_024707 NM_024832 NM_024866 NM_024881 NM_024882 NM_024917 NM_024922 NM_024949 NM_024986 NM_025002 NM_025220 NM_030569 NM_030629 NM_030639 NM_030665 NM_030809 NM_030810 NM_030884 NM_030911 NM_030912 NM_030913 NM_030964 NM_031215 NM_031268 NM_031438 NM_031460 NM_031485 NM_031912 NM_031954 NM_031990 NM_031991 NM_032042 NM_032105 NM_032214 NM_032262 NM_032268 NM_032287 NM_032300 NM_032311 NM_032312 NM_032322 NM_032325 NM_032329 NM_032377 NM_032408 NM_032409 NM_032430 NM_032432 NM_032454 NM_032525 NM_032711 NM_032753 NM_032817 NM_032826 NM_032828 NM_032853 NM_032866 NM_032910 NM_033071 NM_033201 NM_033221 NM_033259 NM_033310 NM_033311 NM_033387 NM_033412 NM_033419 NM_033420 NM_033421 NM_033453 NM_033496 NM_033497 NM_033498 NM_033500 NM_033544 NM_033551 NM_052839 NM_052847 NM_052868 NM_052878 NM_052934 NM_054013 NM_058169 NM_079837 NM_080429 NM_080605 NM_080625 NM_080650 NM_080687 NM_080836 NM_080928 NM_130459 NM_130469 NM_130766 NM_130901 NM_133265 NM_133334 NM_133371 NM_133443 NM_133451 NM_133459 NM_133634 NM_133635 NM_133650 NM_134268 NM_134433 NM_138287 NM_138344 NM_138390 NM_138400 NM_138467 NM_138774 NM_138805 NM_138820 NM_138998 NM_139012 NM_139014 NM_139016 NM_139028 NM_139202 NM_139273 NM_139284 NM_144498 NM_144671 NM_144677 NM_144692 NM_144719 NM_144767 NM_144781 NM_144999 NM_145003 NM_145044 NM_145065 NM_145117 NM_145185 NM_145253 NM_145273 NM_145280 NM_145293 NM_145730 NM_145756 NM_145796 NM_145804 NM_145918 NM_147777 NM_148957 NM_152221 NM_152235 NM_152271 NM_152307 NM_152333 NM_152439 NM_152470 NM_152493 NM_152565 NM_152689 NM_152793 NM_152827 NM_152828 NM_152897 NM_152911 NM_152992 NM_153003 NM_153020 NM_153031 NM_153034 NM_153202 NM_153239 NM_153320 NM_153342 NM_153367 NM_153705 NM_153714 NM_153746 NM_153819 NM_170711 NM_170751 NM_170752 NM_172087 NM_172088 NM_172089 NM_173055 NM_173056 NM_173057 NM_173058 NM_173465 NM_173547 NM_173551 NM_173590 NM_173639 NM_173688 NM_173691 NM_174900 NM_174918 NM_175077 NM_175847 NM_175931 NM_176081 NM_176083 NM_176084 NM_176085 NM_176086 NM_176799 NM_176801 NM_176863 NM_178012 NM_178136 NM_178175 NM_178441 NM_178496 NM_178514 NM_178568 NM_178569 NM_178586 NM_178815 NM_178836 NM_178841 NM_181349 NM_181353 NM_181425 NM_181481 NM_181482 NM_181483 NM_181484 NM_181493 NM_181504 NM_181523 NM_181524 NM_181782 NM_181799 NM_181800 NM_181801 NM_181802 NM_181803 NM_181862 NM_181863 NM_181876 NM_181877 NM_182488 NM_182540 NM_182568 NM_182584 NM_182612 NM_182616 NM_182643 NM_182832 NM_182933 NM_182961 NM_182964 NM_182978 NM_183063 NM_183237 NM_183377 NM_183393 NM_183394 NM_183395 NM_183414 NM_184041 NM_184043 NM_194278 NM_194283 NM_194309 NM_194439 NM_194452 NM_194453 NM_197939 NM_198150 NM_198182 NM_198196 NM_198256 NM_198257 NM_198258 NM_198325 NM_198390 NM_198391 NM_198679 NM_198939 NM_198955 NM_199045 NM_199076 NM_199141 NM_199173 NM_199175 NM_199232 NM_199328 NM_199367 NM_199454 NM_199513 NM_201348 NM_201377 NM_201397 NM_201520 NM_201628 NM_203351 NM_203395 NM_203426 NM_203458 NM_205843 NM_206833 NM_207006 NM_207036 NM_207037 NM_207038 NM_207040 NM_207125 NM_207126 NM_207127 NM_207129 NM_207313 NM_207323 NM_207327 NM_207371 NM_207385 NM_207451 NM_207461 NM_207462 NM_207484 NM_207489 NM_207500 NM_207514 NM_207577 NM_207581 NM_207646 NM_212469 NM_212471 NM_212472 NM_212543 NM_213657 NM_213658 NM_213723 NM_214462 XM_031553 XM_035497 XM_037523 XM_037557 XM_040592 XM_051017 XM_056455 XM_058720 XM_059689 XM_067585 XM_084852 XM_087386 XM_087499 XM_113947 XM_208847 XM_209607 XM_290342 XM_291105 XM_294775 XM_370603 XM_370607 XM_370665 XM_371081 XM_371214 XM_372198 XM_372233 XM_373616 XM_373704 XM_373950 XM_374110 XM_374766 XM_375456 XM_376018 XM_376049 XM_376320 XM_376560 XM_376567 XM_376680 XM_377506 XM_378211 XM_378356 XM_378367 XM_378389 XM_378535 XM_378546 XM_378550 XM_378625 XM_378631 XM_378639 XM_378642 XM_378712 XM_378756 XM_378795 XM_378860 XM_379029 XM_379069 XM_379100 XM_379121 XM_379254 XM_379298 XM_379336 XM_379406 XM_379454 XM_379458 XM_379501 XM_379535 XM_379594 XM_379656 XM_379664 XM_379665 XM_379705 XM_379774 XM_379934 XM_380120 XM_380121 XM_380160 XM_495888 XM_495939 XM_496251 XM_496690 XM_496724 XM_496766 XM_496836 XM_496889 XM_496943 XM_498437 XM_498467 XM_498473 XM_498491 XM_498515 XM_498540 XM_498582 XM_498589 XM_498649 XM_498825 XM_498901 XM_498933 XM_498952 XM_499022 XM_499027 XM_499046 XM_499048 XM_499065 XM_499093 XM_499147 XM_499182 XM_499312 XM_499515 XM_499522 XM_499552 XM_499597 XR_000190 XR_000194 XR_000274 XR_000275
Genes with multiple seed matches:
NM_000264 NM_001003399 NM_001003665 NM_001005387 NM_001006932 NM_001012329 NM_001066 NM_002259 NM_002260 NM_002319 NM_002819 NM_003681 NM_004535 NM_005188 NM_005539 NM_006035 NM_006045 NM_006999 NM_007184 NM_007328 NM_012218 NM_014767 NM_015094 NM_015227 NM_016611 NM_018238 NM_018602 NM_018715 NM_020248 NM_020956 NM_020981 NM_021135 NM_021260 NM_021619 NM_022114 NM_031485 NM_031912 NM_031954 NM_031990 NM_031991 NM_032853 NM_033201 NM_139028 NM_152470 NM_153239 NM_175847 NM_178441 NM_178568 NM_199454 NM_207126 NM_207129 NM_207313 NM_207489 NM_213657 NM_213658 XM_059689 XM_378546 XM_378550 XM_378631 XM_378756 XM_379664 XM_379665 XM_498649 XM_499046
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)