VIRsiRNAdb

Predicted off-targets seeds for siRNA "ggagguuccaacccgaaau" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1246.
Total Genes with multiple seed matches: 72.
Genes with at least one seed match: NM_000043 NM_000074 NM_000087 NM_000091 NM_000113 NM_000142 NM_000159 NM_000161 NM_000164 NM_000192 NM_000196 NM_000232 NM_000237 NM_000248 NM_000253 NM_000259 NM_000277 NM_000278 NM_000297 NM_000322 NM_000330 NM_000332 NM_000350 NM_000351 NM_000381 NM_000382 NM_000391 NM_000425 NM_000448 NM_000579 NM_000599 NM_000611 NM_000612 NM_000623 NM_000663 NM_000681 NM_000807 NM_000815 NM_000828 NM_000838 NM_000861 NM_000868 NM_000870 NM_000909 NM_000953 NM_000997 NM_001001485 NM_001001486 NM_001001487 NM_001001522 NM_001001677 NM_001001696 NM_001001716 NM_001001795 NM_001002254 NM_001002256 NM_001002258 NM_001002269 NM_001002762 NM_001002920 NM_001003399 NM_001003407 NM_001003408 NM_001003652 NM_001003676 NM_001003712 NM_001003792 NM_001003793 NM_001003810 NM_001003828 NM_001004417 NM_001004421 NM_001004422 NM_001005303 NM_001005365 NM_001005387 NM_001005388 NM_001005502 NM_001005845 NM_001006113 NM_001007553 NM_001008493 NM_001008537 NM_001008568 NM_001008569 NM_001008570 NM_001008571 NM_001009554 NM_001009956 NM_001012278 NM_001012508 NM_001012651 NM_001012731 NM_001012733 NM_001012734 NM_001012957 NM_001013404 NM_001013651 NM_001013653 NM_001013664 NM_001013673 NM_001013675 NM_001013678 NM_001013696 NM_001013705 NM_001013708 NM_001013713 NM_001013714 NM_001014440 NM_001014765 NM_001015051 NM_001015877 NM_001015885 NM_001017392 NM_001017395 NM_001017408 NM_001017424 NM_001017425 NM_001017915 NM_001017980 NM_001018021 NM_001018055 NM_001018058 NM_001018065 NM_001018066 NM_001018089 NM_001023563 NM_001023565 NM_001024608 NM_001024630 NM_001024674 NM_001024808 NM_001024858 NM_001024912 NM_001025109 NM_001025266 NM_001092 NM_001102 NM_001114 NM_001156 NM_001179 NM_001206 NM_001254 NM_001257 NM_001259 NM_001282 NM_001291 NM_001298 NM_001305 NM_001319 NM_001334 NM_001340 NM_001400 NM_001432 NM_001438 NM_001463 NM_001534 NM_001537 NM_001547 NM_001558 NM_001560 NM_001617 NM_001627 NM_001667 NM_001689 NM_001712 NM_001716 NM_001735 NM_001759 NM_001773 NM_001780 NM_001806 NM_001821 NM_001829 NM_001838 NM_001856 NM_001858 NM_001874 NM_001924 NM_001987 NM_001993 NM_002006 NM_002011 NM_002085 NM_002119 NM_002138 NM_002141 NM_002221 NM_002232 NM_002296 NM_002310 NM_002313 NM_002359 NM_002416 NM_002417 NM_002469 NM_002474 NM_002501 NM_002543 NM_002555 NM_002589 NM_002702 NM_002725 NM_002762 NM_002767 NM_002878 NM_002911 NM_002926 NM_002973 NM_002981 NM_002993 NM_002999 NM_003009 NM_003010 NM_003024 NM_003042 NM_003043 NM_003084 NM_003088 NM_003098 NM_003102 NM_003108 NM_003112 NM_003161 NM_003181 NM_003186 NM_003204 NM_003269 NM_003281 NM_003326 NM_003347 NM_003349 NM_003356 NM_003372 NM_003385 NM_003412 NM_003423 NM_003435 NM_003439 NM_003458 NM_003480 NM_003559 NM_003585 NM_003605 NM_003610 NM_003644 NM_003660 NM_003675 NM_003681 NM_003695 NM_003709 NM_003724 NM_003803 NM_003842 NM_003887 NM_003897 NM_003899 NM_003913 NM_003926 NM_003955 NM_003987 NM_003988 NM_003989 NM_003990 NM_004034 NM_004098 NM_004107 NM_004132 NM_004171 NM_004185 NM_004200 NM_004204 NM_004305 NM_004319 NM_004322 NM_004348 NM_004357 NM_004384 NM_004394 NM_004430 NM_004431 NM_004455 NM_004496 NM_004505 NM_004527 NM_004566 NM_004571 NM_004649 NM_004657 NM_004679 NM_004723 NM_004729 NM_004730 NM_004736 NM_004745 NM_004758 NM_004778 NM_004796 NM_004804 NM_004817 NM_004918 NM_004921 NM_004943 NM_004985 NM_004992 NM_005018 NM_005019 NM_005027 NM_005053 NM_005173 NM_005187 NM_005197 NM_005214 NM_005256 NM_005347 NM_005357 NM_005370 NM_005399 NM_005413 NM_005417 NM_005423 NM_005479 NM_005530 NM_005541 NM_005542 NM_005584 NM_005595 NM_005645 NM_005647 NM_005677 NM_005688 NM_005689 NM_005724 NM_005821 NM_005844 NM_005853 NM_005885 NM_005901 NM_005995 NM_006060 NM_006100 NM_006129 NM_006176 NM_006296 NM_006359 NM_006366 NM_006393 NM_006407 NM_006460 NM_006481 NM_006487 NM_006513 NM_006522 NM_006534 NM_006569 NM_006701 NM_006720 NM_006722 NM_006732 NM_006807 NM_006811 NM_006814 NM_006825 NM_006827 NM_006868 NM_006873 NM_006897 NM_006940 NM_006958 NM_006989 NM_006996 NM_006999 NM_007006 NM_007007 NM_007033 NM_007158 NM_007175 NM_007249 NM_007306 NM_007325 NM_007370 NM_012087 NM_012102 NM_012116 NM_012126 NM_012207 NM_012224 NM_012252 NM_012288 NM_012323 NM_012325 NM_012398 NM_012405 NM_012414 NM_012471 NM_013231 NM_013255 NM_013276 NM_013279 NM_013286 NM_013327 NM_013354 NM_013357 NM_013363 NM_013386 NM_013397 NM_013443 NM_013446 NM_013447 NM_013999 NM_014005 NM_014033 NM_014160 NM_014168 NM_014217 NM_014233 NM_014249 NM_014296 NM_014344 NM_014351 NM_014360 NM_014405 NM_014468 NM_014586 NM_014587 NM_014631 NM_014646 NM_014655 NM_014702 NM_014721 NM_014725 NM_014743 NM_014755 NM_014765 NM_014766 NM_014767 NM_014772 NM_014784 NM_014805 NM_014809 NM_014844 NM_014879 NM_014897 NM_014899 NM_014909 NM_014919 NM_014920 NM_014952 NM_014961 NM_014972 NM_014974 NM_015039 NM_015060 NM_015070 NM_015077 NM_015079 NM_015090 NM_015117 NM_015138 NM_015170 NM_015178 NM_015206 NM_015229 NM_015245 NM_015254 NM_015265 NM_015267 NM_015272 NM_015285 NM_015299 NM_015313 NM_015319 NM_015326 NM_015329 NM_015353 NM_015375 NM_015380 NM_015393 NM_015419 NM_015438 NM_015444 NM_015447 NM_015475 NM_015497 NM_015503 NM_015537 NM_015553 NM_015555 NM_015558 NM_015560 NM_015635 NM_015649 NM_015654 NM_015657 NM_015658 NM_015720 NM_015723 NM_015898 NM_015939 NM_016028 NM_016042 NM_016084 NM_016118 NM_016170 NM_016201 NM_016224 NM_016292 NM_016308 NM_016323 NM_016353 NM_016376 NM_016510 NM_016513 NM_016611 NM_016614 NM_017420 NM_017433 NM_017483 NM_017485 NM_017486 NM_017488 NM_017515 NM_017626 NM_017651 NM_017652 NM_017654 NM_017680 NM_017719 NM_017722 NM_017723 NM_017901 NM_017938 NM_017994 NM_018006 NM_018008 NM_018011 NM_018028 NM_018036 NM_018047 NM_018055 NM_018201 NM_018207 NM_018212 NM_018223 NM_018243 NM_018269 NM_018276 NM_018296 NM_018316 NM_018401 NM_018450 NM_018557 NM_018579 NM_018656 NM_018658 NM_018660 NM_018662 NM_018689 NM_018696 NM_018697 NM_018706 NM_018836 NM_018945 NM_019000 NM_019014 NM_019027 NM_019057 NM_019070 NM_019094 NM_019117 NM_019590 NM_019895 NM_020038 NM_020132 NM_020133 NM_020182 NM_020185 NM_020226 NM_020381 NM_020384 NM_020399 NM_020405 NM_020429 NM_020433 NM_020451 NM_020474 NM_020663 NM_020675 NM_020686 NM_020717 NM_020764 NM_020784 NM_020802 NM_020818 NM_020841 NM_020861 NM_020909 NM_020921 NM_020956 NM_020970 NM_020993 NM_021020 NM_021033 NM_021101 NM_021149 NM_021202 NM_021205 NM_021215 NM_021227 NM_021242 NM_021628 NM_021632 NM_021644 NM_021646 NM_021924 NM_021931 NM_021945 NM_021953 NM_021957 NM_021961 NM_021962 NM_021988 NM_022041 NM_022058 NM_022126 NM_022153 NM_022160 NM_022442 NM_022444 NM_022463 NM_022750 NM_022780 NM_022817 NM_022819 NM_022834 NM_022844 NM_022912 NM_022963 NM_022965 NM_023067 NM_023107 NM_023108 NM_023938 NM_024003 NM_024022 NM_024054 NM_024068 NM_024072 NM_024299 NM_024301 NM_024332 NM_024342 NM_024494 NM_024501 NM_024508 NM_024533 NM_024563 NM_024569 NM_024592 NM_024607 NM_024611 NM_024633 NM_024636 NM_024757 NM_024774 NM_024819 NM_024847 NM_024876 NM_024894 NM_024935 NM_024949 NM_024952 NM_024959 NM_025010 NM_025030 NM_025104 NM_025125 NM_025129 NM_025130 NM_025193 NM_025201 NM_025203 NM_025208 NM_025235 NM_025237 NM_025265 NM_030569 NM_030641 NM_030643 NM_030645 NM_030761 NM_030806 NM_030907 NM_030919 NM_030920 NM_031264 NM_031265 NM_031271 NM_031295 NM_031362 NM_031363 NM_031364 NM_031365 NM_031366 NM_031369 NM_031370 NM_031420 NM_031445 NM_031462 NM_031478 NM_031483 NM_031903 NM_031964 NM_031965 NM_032175 NM_032217 NM_032227 NM_032286 NM_032317 NM_032319 NM_032356 NM_032370 NM_032377 NM_032401 NM_032404 NM_032447 NM_032458 NM_032556 NM_032559 NM_032607 NM_032625 NM_032710 NM_032711 NM_032817 NM_032836 NM_032843 NM_032861 NM_032862 NM_032966 NM_032989 NM_033025 NM_033092 NM_033103 NM_033114 NM_033135 NM_033182 NM_033195 NM_033209 NM_033244 NM_033246 NM_033290 NM_033291 NM_033296 NM_033316 NM_033317 NM_033331 NM_033332 NM_033357 NM_033360 NM_033387 NM_033449 NM_033666 NM_052815 NM_052834 NM_052861 NM_052879 NM_052906 NM_052910 NM_052949 NM_052962 NM_052996 NM_053055 NM_053277 NM_053279 NM_058183 NM_058217 NM_058243 NM_078483 NM_080385 NM_080417 NM_080538 NM_080539 NM_080540 NM_080541 NM_080542 NM_080543 NM_080544 NM_080612 NM_080717 NM_080740 NM_130388 NM_130807 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_130845 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133375 NM_133448 NM_133628 NM_138287 NM_138342 NM_138456 NM_138705 NM_138820 NM_138926 NM_138970 NM_139030 NM_139058 NM_139201 NM_139242 NM_139264 NM_139279 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351 NM_144494 NM_144586 NM_144597 NM_144600 NM_144636 NM_144640 NM_144641 NM_144669 NM_144692 NM_144721 NM_144778 NM_144962 NM_145015 NM_145040 NM_145064 NM_145117 NM_145175 NM_145273 NM_145283 NM_145298 NM_145323 NM_145324 NM_145349 NM_145350 NM_145351 NM_145660 NM_145734 NM_145735 NM_145754 NM_145805 NM_145891 NM_145892 NM_145893 NM_147161 NM_147166 NM_147174 NM_147175 NM_147187 NM_148915 NM_148920 NM_152235 NM_152272 NM_152308 NM_152352 NM_152361 NM_152371 NM_152400 NM_152414 NM_152458 NM_152461 NM_152483 NM_152509 NM_152510 NM_152515 NM_152579 NM_152591 NM_152624 NM_152665 NM_152678 NM_152722 NM_152734 NM_152835 NM_152857 NM_152858 NM_152871 NM_152872 NM_152873 NM_152874 NM_152875 NM_152876 NM_152877 NM_152878 NM_152906 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_152934 NM_152989 NM_153028 NM_153029 NM_153191 NM_153208 NM_153235 NM_153355 NM_153367 NM_153451 NM_153456 NM_153480 NM_153481 NM_153482 NM_153483 NM_153610 NM_153683 NM_153752 NM_170601 NM_170705 NM_170706 NM_170741 NM_170742 NM_170754 NM_171982 NM_172367 NM_173076 NM_173161 NM_173485 NM_173509 NM_173527 NM_173544 NM_173548 NM_173561 NM_173570 NM_173582 NM_173610 NM_173616 NM_173872 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958 NM_175616 NM_175923 NM_175931 NM_176800 NM_176853 NM_176874 NM_177427 NM_177553 NM_177954 NM_177999 NM_178010 NM_178129 NM_178550 NM_178578 NM_178579 NM_178857 NM_181268 NM_181270 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181290 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301 NM_181309 NM_181310 NM_181349 NM_181355 NM_181486 NM_181503 NM_181510 NM_181578 NM_181643 NM_181654 NM_181659 NM_181826 NM_181827 NM_181880 NM_182503 NM_182528 NM_182558 NM_182568 NM_182580 NM_182596 NM_182609 NM_182740 NM_182964 NM_183233 NM_183412 NM_183413 NM_183416 NM_194309 NM_194313 NM_194442 NM_198155 NM_198157 NM_198158 NM_198159 NM_198177 NM_198178 NM_198236 NM_198256 NM_198257 NM_198258 NM_198270 NM_198291 NM_198316 NM_198320 NM_198325 NM_198336 NM_198337 NM_198452 NM_198461 NM_198485 NM_198494 NM_198545 NM_198568 NM_198849 NM_198889 NM_198902 NM_198935 NM_199040 NM_199121 NM_199144 NM_199168 NM_199169 NM_199170 NM_199171 NM_199188 NM_199190 NM_199203 NM_199206 NM_199227 NM_199324 NM_199331 NM_199332 NM_199343 NM_199462 NM_199464 NM_201348 NM_201432 NM_201433 NM_201550 NM_201613 NM_201629 NM_202002 NM_202003 NM_203303 NM_203329 NM_203330 NM_203331 NM_203390 NM_203428 NM_203429 NM_203446 NM_205848 NM_206594 NM_206595 NM_206853 NM_206854 NM_206855 NM_206926 NM_207303 NM_207304 NM_207337 NM_207387 NM_207442 NM_207460 NM_207473 NM_207495 NM_207507 NM_207514 NM_213606 NM_213612 NM_213647 NM_213651 NM_214711 XM_027236 XM_037557 XM_044178 XM_047995 XM_056455 XM_059689 XM_088459 XM_114415 XM_117294 XM_166103 XM_166132 XM_166227 XM_211871 XM_290546 XM_291344 XM_294450 XM_298151 XM_370758 XM_371120 XM_371783 XM_372013 XM_372019 XM_372028 XM_372030 XM_372420 XM_372869 XM_373704 XM_373742 XM_373765 XM_373831 XM_373844 XM_373846 XM_374001 XM_374069 XM_374078 XM_374141 XM_374192 XM_374767 XM_375029 XM_376018 XM_376165 XM_376558 XM_376602 XM_376658 XM_376774 XM_378312 XM_378390 XM_378507 XM_378549 XM_378573 XM_378625 XM_378628 XM_378698 XM_378701 XM_378708 XM_378760 XM_378783 XM_378786 XM_378793 XM_378840 XM_378993 XM_379060 XM_379108 XM_379118 XM_379136 XM_379145 XM_379156 XM_379163 XM_379189 XM_379267 XM_379273 XM_379298 XM_379363 XM_379381 XM_379391 XM_379417 XM_379438 XM_379452 XM_379456 XM_379474 XM_379595 XM_379619 XM_379623 XM_379820 XM_379897 XM_380089 XM_380103 XM_495798 XM_495888 XM_496134 XM_496335 XM_496351 XM_496575 XM_496608 XM_496945 XM_496946 XM_496947 XM_496948 XM_496949 XM_496957 XM_496961 XM_496990 XM_497036 XM_497080 XM_498422 XM_498442 XM_498507 XM_498609 XM_498629 XM_498677 XM_498763 XM_498801 XM_498814 XM_498824 XM_498825 XM_498852 XM_498901 XM_498910 XM_498912 XM_498929 XM_498932 XM_498945 XM_498956 XM_498972 XM_498974 XM_498984 XM_499022 XM_499051 XM_499082 XM_499093 XM_499127 XM_499147 XM_499173 XM_499362 XM_499502 XM_499536 XM_499550 XM_499552 XM_499572 XR_000182 XR_000194 XR_000195 XR_000261 XR_000266 XR_000292	Genes with multiple seed matches: NM_000332 NM_000425 NM_000599 NM_000612 NM_001003652 NM_001012651 NM_001017980 NM_001319 NM_002006 NM_002543 NM_002973 NM_003204 NM_003349 NM_003423 NM_004657 NM_004745 NM_005187 NM_005197 NM_005901 NM_006534 NM_006732 NM_006827 NM_006873 NM_012102 NM_012288 NM_013255 NM_014755 NM_014844 NM_015170 NM_015206 NM_015265 NM_015326 NM_015393 NM_015658 NM_016118 NM_017488 NM_018011 NM_018401 NM_018706 NM_018836 NM_020405 NM_020909 NM_020956 NM_021988 NM_022442 NM_022912 NM_024003 NM_030806 NM_033387 NM_058217 NM_080417 NM_080612 NM_153029 NM_173509 NM_173616 NM_175931 NM_181659 NM_194309 NM_198485 NM_199144 NM_199203 NM_203303 NM_206855 XM_372019 XM_373765 XM_375029 XM_379273 XM_379417 XM_499147 XR_000261 XR_000266 XR_000292

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA