VIRsiRNAdb

Predicted off-targets seeds for siRNA "cuggaccagaaggcuccggcgg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :962.
Total Genes with multiple seed matches: 125.
Genes with at least one seed match: NM_000017 NM_000068 NM_000076 NM_000092 NM_000122 NM_000125 NM_000136 NM_000148 NM_000151 NM_000156 NM_000188 NM_000235 NM_000268 NM_000278 NM_000335 NM_000337 NM_000376 NM_000407 NM_000445 NM_000455 NM_000476 NM_000490 NM_000612 NM_000633 NM_000635 NM_000657 NM_000659 NM_000664 NM_000665 NM_000684 NM_000815 NM_000820 NM_000875 NM_000876 NM_000897 NM_000920 NM_001001132 NM_001001188 NM_001001677 NM_001001691 NM_001001791 NM_001001795 NM_001001852 NM_001001924 NM_001001925 NM_001001927 NM_001001931 NM_001002019 NM_001002020 NM_001002244 NM_001002245 NM_001002246 NM_001002247 NM_001002248 NM_001002249 NM_001002295 NM_001002762 NM_001003396 NM_001003397 NM_001004307 NM_001004321 NM_001004322 NM_001004333 NM_001004342 NM_001004349 NM_001005291 NM_001005303 NM_001005407 NM_001005737 NM_001007279 NM_001008407 NM_001008408 NM_001008563 NM_001008568 NM_001008569 NM_001008570 NM_001008571 NM_001008745 NM_001008781 NM_001009820 NM_001009880 NM_001010926 NM_001012446 NM_001012733 NM_001012734 NM_001013634 NM_001013653 NM_001013685 NM_001013696 NM_001013701 NM_001013706 NM_001013710 NM_001013722 NM_001013723 NM_001013726 NM_001013839 NM_001014985 NM_001017535 NM_001017965 NM_001018051 NM_001018095 NM_001018099 NM_001024401 NM_001024808 NM_001025077 NM_001080 NM_001092 NM_001114 NM_001116 NM_001124 NM_001130 NM_001176 NM_001189 NM_001194 NM_001197 NM_001261 NM_001280 NM_001286 NM_001319 NM_001356 NM_001519 NM_001534 NM_001556 NM_001619 NM_001666 NM_001680 NM_001694 NM_001700 NM_001716 NM_001842 NM_001846 NM_001894 NM_001909 NM_001936 NM_001958 NM_001978 NM_001987 NM_002051 NM_002068 NM_002081 NM_002088 NM_002105 NM_002165 NM_002168 NM_002314 NM_002315 NM_002319 NM_002353 NM_002501 NM_002509 NM_002517 NM_002522 NM_002531 NM_002556 NM_002579 NM_002594 NM_002617 NM_002629 NM_002653 NM_002666 NM_002699 NM_002714 NM_002716 NM_002725 NM_002739 NM_002746 NM_002886 NM_002918 NM_002926 NM_002957 NM_003025 NM_003042 NM_003043 NM_003072 NM_003102 NM_003107 NM_003108 NM_003190 NM_003220 NM_003278 NM_003300 NM_003311 NM_003313 NM_003378 NM_003388 NM_003486 NM_003575 NM_003646 NM_003648 NM_003655 NM_003681 NM_003687 NM_003714 NM_003751 NM_003808 NM_003815 NM_003924 NM_003926 NM_003950 NM_003954 NM_003987 NM_003988 NM_003989 NM_003990 NM_004030 NM_004093 NM_004104 NM_004129 NM_004140 NM_004176 NM_004205 NM_004227 NM_004285 NM_004305 NM_004309 NM_004311 NM_004364 NM_004370 NM_004380 NM_004409 NM_004455 NM_004481 NM_004558 NM_004567 NM_004571 NM_004730 NM_004744 NM_004745 NM_004821 NM_004848 NM_004854 NM_004894 NM_004936 NM_004959 NM_004991 NM_004992 NM_005094 NM_005170 NM_005185 NM_005189 NM_005194 NM_005197 NM_005206 NM_005338 NM_005428 NM_005461 NM_005515 NM_005585 NM_005599 NM_005806 NM_005860 NM_005883 NM_005933 NM_005957 NM_005964 NM_005969 NM_005986 NM_006026 NM_006037 NM_006079 NM_006160 NM_006202 NM_006235 NM_006328 NM_006351 NM_006361 NM_006374 NM_006426 NM_006480 NM_006549 NM_006613 NM_006640 NM_006645 NM_006646 NM_006676 NM_006687 NM_006705 NM_006725 NM_006732 NM_006816 NM_006869 NM_006897 NM_006927 NM_006943 NM_006998 NM_007014 NM_007030 NM_007169 NM_007229 NM_007345 NM_007353 NM_007357 NM_012126 NM_012130 NM_012288 NM_012301 NM_012304 NM_012326 NM_012399 NM_012408 NM_012429 NM_012453 NM_012458 NM_012470 NM_013275 NM_013280 NM_013304 NM_013385 NM_013397 NM_013433 NM_014066 NM_014069 NM_014213 NM_014235 NM_014279 NM_014360 NM_014417 NM_014431 NM_014448 NM_014478 NM_014562 NM_014634 NM_014665 NM_014668 NM_014706 NM_014714 NM_014732 NM_014743 NM_014757 NM_014772 NM_014788 NM_014798 NM_014811 NM_014844 NM_014854 NM_014867 NM_014869 NM_014874 NM_014901 NM_014916 NM_014919 NM_014994 NM_015015 NM_015063 NM_015078 NM_015113 NM_015124 NM_015140 NM_015193 NM_015219 NM_015227 NM_015229 NM_015245 NM_015264 NM_015305 NM_015318 NM_015321 NM_015381 NM_015417 NM_015518 NM_015537 NM_015557 NM_015604 NM_015831 NM_015894 NM_015898 NM_015949 NM_016016 NM_016084 NM_016155 NM_016170 NM_016176 NM_016224 NM_016263 NM_016337 NM_016358 NM_016412 NM_016418 NM_016476 NM_016547 NM_016564 NM_016581 NM_016590 NM_016611 NM_016621 NM_016643 NM_016735 NM_016823 NM_017413 NM_017424 NM_017450 NM_017550 NM_017555 NM_017586 NM_017588 NM_017622 NM_017656 NM_017723 NM_017797 NM_017814 NM_017891 NM_017896 NM_017899 NM_017909 NM_017979 NM_018006 NM_018032 NM_018089 NM_018201 NM_018210 NM_018378 NM_018390 NM_018409 NM_018419 NM_018482 NM_018649 NM_018941 NM_018942 NM_018943 NM_018952 NM_018992 NM_019009 NM_019011 NM_019064 NM_019085 NM_020126 NM_020170 NM_020180 NM_020201 NM_020223 NM_020310 NM_020325 NM_020433 NM_020465 NM_020647 NM_020708 NM_020746 NM_020749 NM_020764 NM_020777 NM_020795 NM_020851 NM_020956 NM_020993 NM_021020 NM_021025 NM_021064 NM_021070 NM_021098 NM_021116 NM_021148 NM_021164 NM_021168 NM_021267 NM_021570 NM_021603 NM_021619 NM_021638 NM_021727 NM_021735 NM_021736 NM_021737 NM_021817 NM_021830 NM_021905 NM_021945 NM_021962 NM_021966 NM_021973 NM_022066 NM_022164 NM_022172 NM_022468 NM_022759 NM_022766 NM_022834 NM_022898 NM_022910 NM_023018 NM_023067 NM_023928 NM_023931 NM_024297 NM_024329 NM_024337 NM_024507 NM_024515 NM_024522 NM_024527 NM_024533 NM_024569 NM_024591 NM_024653 NM_024667 NM_024676 NM_024718 NM_024830 NM_024832 NM_024859 NM_024866 NM_025021 NM_025176 NM_025204 NM_025215 NM_025219 NM_025237 NM_025251 NM_030567 NM_030582 NM_030626 NM_030633 NM_030665 NM_030775 NM_030795 NM_030895 NM_030961 NM_031287 NM_031449 NM_031475 NM_031945 NM_032042 NM_032109 NM_032152 NM_032207 NM_032251 NM_032262 NM_032268 NM_032276 NM_032310 NM_032329 NM_032350 NM_032377 NM_032382 NM_032421 NM_032430 NM_032432 NM_032449 NM_032515 NM_032529 NM_032536 NM_032641 NM_032642 NM_032737 NM_032801 NM_032826 NM_032843 NM_032871 NM_032883 NM_032932 NM_032957 NM_032966 NM_032988 NM_032994 NM_033219 NM_033220 NM_033259 NM_033291 NM_033420 NM_033496 NM_033497 NM_033498 NM_033500 NM_052821 NM_052838 NM_052842 NM_052847 NM_052925 NM_052933 NM_052970 NM_052978 NM_052999 NM_057179 NM_058189 NM_058238 NM_078487 NM_080605 NM_080625 NM_080645 NM_080647 NM_080665 NM_080789 NM_080790 NM_130444 NM_130445 NM_130459 NM_130797 NM_130844 NM_130901 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133369 NM_133375 NM_133443 NM_133467 NM_133627 NM_133628 NM_133630 NM_134422 NM_134423 NM_134424 NM_134433 NM_138278 NM_138350 NM_138442 NM_138567 NM_138576 NM_138620 NM_138699 NM_139028 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351 NM_144492 NM_144605 NM_144640 NM_144645 NM_145035 NM_145178 NM_145244 NM_145245 NM_145265 NM_145298 NM_145347 NM_145348 NM_145349 NM_145350 NM_145351 NM_145685 NM_145725 NM_145726 NM_145763 NM_147164 NM_148172 NM_148173 NM_152221 NM_152222 NM_152237 NM_152312 NM_152346 NM_152362 NM_152378 NM_152451 NM_152461 NM_152482 NM_152488 NM_152569 NM_152702 NM_152760 NM_152879 NM_153031 NM_153334 NM_153482 NM_153499 NM_153500 NM_153619 NM_153690 NM_153810 NM_153818 NM_156036 NM_156037 NM_170711 NM_170716 NM_170740 NM_172024 NM_172087 NM_172088 NM_172089 NM_172216 NM_172226 NM_172229 NM_172239 NM_173476 NM_173484 NM_173617 NM_173618 NM_173639 NM_173680 NM_173689 NM_173805 NM_173831 NM_174922 NM_174925 NM_174929 NM_175892 NM_175895 NM_175898 NM_175901 NM_175922 NM_176792 NM_177401 NM_177405 NM_177925 NM_177978 NM_177979 NM_178004 NM_178013 NM_178125 NM_178145 NM_178170 NM_178191 NM_178516 NM_178543 NM_178557 NM_178569 NM_178819 NM_178826 NM_178839 NM_178841 NM_181268 NM_181269 NM_181270 NM_181271 NM_181272 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181289 NM_181290 NM_181291 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301 NM_181336 NM_181340 NM_181341 NM_181353 NM_181521 NM_181722 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182518 NM_182574 NM_182584 NM_182586 NM_182612 NM_182637 NM_182638 NM_182712 NM_182812 NM_182895 NM_183047 NM_183048 NM_194290 NM_194294 NM_194295 NM_194303 NM_194310 NM_194428 NM_194460 NM_197976 NM_198056 NM_198462 NM_198478 NM_198502 NM_198537 NM_198542 NM_198571 NM_198585 NM_198595 NM_198835 NM_198851 NM_198969 NM_198970 NM_199054 NM_199121 NM_199162 NM_199367 NM_199424 NM_201348 NM_201378 NM_201379 NM_201380 NM_201381 NM_201382 NM_201383 NM_201384 NM_201397 NM_201532 NM_201533 NM_201628 NM_203305 NM_203306 NM_206833 NM_206835 NM_206910 NM_206911 NM_206918 NM_207006 NM_207111 NM_207116 NM_207125 NM_207126 NM_207129 NM_207191 NM_207194 NM_207195 NM_207196 NM_207197 NM_207306 NM_207309 NM_207324 NM_207334 NM_207370 NM_207386 NM_207401 NM_207412 NM_207423 NM_207440 NM_207451 NM_207458 NM_207484 NM_207495 NM_207509 NM_207577 NM_207581 NM_207644 NM_212467 NM_213605 XM_057107 XM_059689 XM_166320 XM_170658 XM_171855 XM_209559 XM_211088 XM_211896 XM_290734 XM_290925 XM_291105 XM_294450 XM_294960 XM_295213 XM_370965 XM_371214 XM_372028 XM_372030 XM_372038 XM_372138 XM_372716 XM_373631 XM_373704 XM_373786 XM_373821 XM_373846 XM_373906 XM_374069 XM_374186 XM_374249 XM_375153 XM_375373 XM_375558 XM_375668 XM_375670 XM_376062 XM_376454 XM_376567 XM_376784 XM_377476 XM_378178 XM_378350 XM_378628 XM_378639 XM_378708 XM_378730 XM_378828 XM_378848 XM_378858 XM_378860 XM_378957 XM_379029 XM_379060 XM_379118 XM_379145 XM_379247 XM_379273 XM_379391 XM_379402 XM_379452 XM_379458 XM_379774 XM_379920 XM_380171 XM_495888 XM_495908 XM_495918 XM_495939 XM_496143 XM_496408 XM_496584 XM_496841 XM_496877 XM_496943 XM_496976 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497160 XM_498424 XM_498491 XM_498511 XM_498534 XM_498556 XM_498595 XM_498602 XM_498677 XM_498683 XM_498687 XM_498696 XM_498704 XM_498814 XM_498835 XM_498877 XM_498886 XM_498917 XM_499022 XM_499068 XM_499088 XM_499093 XM_499105 XM_499155 XM_499164 XM_499170 XM_499247 XM_499519 XM_499543 XM_499554 XR_000184 XR_000190 XR_000254 XR_000261 XR_000266 XR_000268 XR_000275 XR_000292 XR_000294	Genes with multiple seed matches: NM_000068 NM_000657 NM_001001791 NM_001001795 NM_001004321 NM_001004333 NM_001008408 NM_001008745 NM_001009820 NM_001013685 NM_001013701 NM_001013726 NM_001018095 NM_001018099 NM_001024808 NM_001194 NM_001261 NM_001519 NM_001958 NM_002105 NM_002319 NM_002501 NM_002653 NM_003108 NM_003486 NM_004227 NM_004455 NM_004558 NM_004745 NM_005194 NM_005428 NM_005515 NM_005806 NM_005883 NM_005957 NM_005986 NM_006026 NM_006037 NM_006202 NM_014213 NM_014417 NM_014634 NM_014665 NM_014844 NM_014854 NM_014916 NM_014919 NM_015015 NM_015417 NM_015898 NM_016224 NM_016735 NM_017424 NM_018942 NM_018952 NM_020708 NM_020777 NM_020993 NM_021070 NM_021168 NM_021817 NM_022164 NM_022766 NM_022834 NM_023931 NM_024676 NM_025219 NM_030567 NM_030665 NM_032042 NM_032109 NM_032262 NM_032515 NM_032988 NM_033259 NM_052933 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133467 NM_139028 NM_145347 NM_145348 NM_145349 NM_145350 NM_145351 NM_145685 NM_152237 NM_152451 NM_153031 NM_156036 NM_156037 NM_175898 NM_177405 NM_178516 NM_181722 NM_199121 NM_203305 NM_207129 NM_207309 NM_207401 XM_170658 XM_171855 XM_371214 XM_373704 XM_378178 XM_379029 XM_379145 XM_379391 XM_495888 XM_496143 XM_498595 XM_498602 XM_498835 XM_499088 XM_499093 XM_499170 XM_499543 XR_000184 XR_000190 XR_000254 XR_000268 XR_000294

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA