VIRsiRNAdb

Predicted off-targets seeds for siRNA "ccuugcuguuccacaaugucguauu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :928.
Total Genes with multiple seed matches: 38.
Genes with at least one seed match: NM_000151 NM_000188 NM_000244 NM_000245 NM_000297 NM_000313 NM_000411 NM_000418 NM_000430 NM_000570 NM_000574 NM_000577 NM_000599 NM_000605 NM_000635 NM_000664 NM_000793 NM_000801 NM_000809 NM_000814 NM_000860 NM_000877 NM_000878 NM_000891 NM_000922 NM_000958 NM_000961 NM_000962 NM_001001586 NM_001001662 NM_001001664 NM_001001874 NM_001001928 NM_001001929 NM_001001930 NM_001001938 NM_001002261 NM_001002262 NM_001003674 NM_001003675 NM_001003712 NM_001003818 NM_001004300 NM_001004439 NM_001005373 NM_001005374 NM_001005409 NM_001006113 NM_001007023 NM_001007239 NM_001007254 NM_001007535 NM_001008491 NM_001008492 NM_001009553 NM_001009565 NM_001009571 NM_001009956 NM_001009960 NM_001010853 NM_001010861 NM_001010888 NM_001010908 NM_001012339 NM_001012393 NM_001012420 NM_001012981 NM_001012988 NM_001014279 NM_001015045 NM_001015886 NM_001017415 NM_001017416 NM_001017980 NM_001018104 NM_001024593 NM_001024649 NM_001024668 NM_001024669 NM_001024670 NM_001024671 NM_001024956 NM_001025079 NM_001025080 NM_001025266 NM_001050 NM_001131 NM_001163 NM_001186 NM_001204 NM_001219 NM_001245 NM_001256 NM_001259 NM_001333 NM_001390 NM_001412 NM_001419 NM_001490 NM_001634 NM_001635 NM_001649 NM_001695 NM_001709 NM_001732 NM_001746 NM_001761 NM_001777 NM_001871 NM_001882 NM_001918 NM_001936 NM_001942 NM_002006 NM_002024 NM_002048 NM_002052 NM_002086 NM_002111 NM_002233 NM_002351 NM_002465 NM_002481 NM_002500 NM_002531 NM_002543 NM_002545 NM_002599 NM_002605 NM_002613 NM_002653 NM_002655 NM_002656 NM_002662 NM_002670 NM_002714 NM_002731 NM_002737 NM_002760 NM_002766 NM_002814 NM_002833 NM_002849 NM_002868 NM_002879 NM_002913 NM_002915 NM_002993 NM_003011 NM_003048 NM_003071 NM_003074 NM_003107 NM_003118 NM_003150 NM_003168 NM_003178 NM_003192 NM_003234 NM_003247 NM_003268 NM_003343 NM_003347 NM_003348 NM_003368 NM_003385 NM_003403 NM_003412 NM_003455 NM_003474 NM_003483 NM_003498 NM_003583 NM_003605 NM_003644 NM_003648 NM_003674 NM_003692 NM_003740 NM_003799 NM_003824 NM_003921 NM_003939 NM_003941 NM_003958 NM_004050 NM_004063 NM_004101 NM_004124 NM_004229 NM_004302 NM_004338 NM_004370 NM_004389 NM_004398 NM_004404 NM_004405 NM_004414 NM_004423 NM_004454 NM_004457 NM_004462 NM_004469 NM_004529 NM_004539 NM_004586 NM_004588 NM_004607 NM_004657 NM_004667 NM_004707 NM_004717 NM_004768 NM_004776 NM_004797 NM_004815 NM_004842 NM_004850 NM_004936 NM_004948 NM_004992 NM_005010 NM_005036 NM_005041 NM_005044 NM_005059 NM_005065 NM_005086 NM_005140 NM_005188 NM_005197 NM_005207 NM_005226 NM_005235 NM_005284 NM_005378 NM_005388 NM_005402 NM_005407 NM_005436 NM_005491 NM_005502 NM_005578 NM_005610 NM_005627 NM_005680 NM_005735 NM_005740 NM_005742 NM_005752 NM_005840 NM_005841 NM_005845 NM_005877 NM_005887 NM_005904 NM_005986 NM_006011 NM_006016 NM_006024 NM_006048 NM_006111 NM_006155 NM_006206 NM_006212 NM_006251 NM_006301 NM_006308 NM_006355 NM_006389 NM_006464 NM_006482 NM_006510 NM_006528 NM_006540 NM_006544 NM_006581 NM_006595 NM_006625 NM_006646 NM_006661 NM_006704 NM_006718 NM_006731 NM_006738 NM_006784 NM_006793 NM_006811 NM_006843 NM_006897 NM_006918 NM_006969 NM_006988 NM_006997 NM_007038 NM_007150 NM_007168 NM_007200 NM_007274 NM_007306 NM_007375 NM_012096 NM_012211 NM_012238 NM_012327 NM_013252 NM_013261 NM_013276 NM_013277 NM_013325 NM_013336 NM_013374 NM_013384 NM_013937 NM_013960 NM_013989 NM_014023 NM_014098 NM_014267 NM_014279 NM_014325 NM_014358 NM_014399 NM_014629 NM_014646 NM_014660 NM_014682 NM_014714 NM_014724 NM_014743 NM_014744 NM_014748 NM_014758 NM_014764 NM_014776 NM_014779 NM_014784 NM_014789 NM_014792 NM_014805 NM_014809 NM_014822 NM_014824 NM_014841 NM_014864 NM_014867 NM_014883 NM_014904 NM_014912 NM_014913 NM_014934 NM_014953 NM_014955 NM_014961 NM_015003 NM_015004 NM_015020 NM_015025 NM_015033 NM_015044 NM_015051 NM_015076 NM_015097 NM_015149 NM_015202 NM_015215 NM_015310 NM_015349 NM_015353 NM_015378 NM_015385 NM_015416 NM_015423 NM_015443 NM_015456 NM_015541 NM_015555 NM_015568 NM_015569 NM_015570 NM_015576 NM_015609 NM_015697 NM_015917 NM_015935 NM_015975 NM_015980 NM_015981 NM_015986 NM_016023 NM_016048 NM_016205 NM_016206 NM_016263 NM_016264 NM_016343 NM_016363 NM_016377 NM_016396 NM_016410 NM_016562 NM_016589 NM_016617 NM_016620 NM_016626 NM_017409 NM_017447 NM_017516 NM_017542 NM_017577 NM_017656 NM_017682 NM_017775 NM_017789 NM_017801 NM_017837 NM_017943 NM_017954 NM_017968 NM_017987 NM_017998 NM_018048 NM_018057 NM_018059 NM_018112 NM_018126 NM_018153 NM_018156 NM_018157 NM_018177 NM_018181 NM_018205 NM_018239 NM_018243 NM_018257 NM_018301 NM_018388 NM_018389 NM_018407 NM_018433 NM_018440 NM_018555 NM_018683 NM_018698 NM_018833 NM_018834 NM_018837 NM_018847 NM_018848 NM_018932 NM_018992 NM_019001 NM_019022 NM_019035 NM_019036 NM_019061 NM_019066 NM_019087 NM_019114 NM_019555 NM_020119 NM_020148 NM_020157 NM_020209 NM_020338 NM_020353 NM_020367 NM_020468 NM_020640 NM_020648 NM_020760 NM_020841 NM_020870 NM_020917 NM_020954 NM_020988 NM_021021 NM_021038 NM_021059 NM_021079 NM_021083 NM_021183 NM_021187 NM_021255 NM_021652 NM_021912 NM_021943 NM_022075 NM_022105 NM_022138 NM_022351 NM_022444 NM_022469 NM_022728 NM_022761 NM_022894 NM_022900 NM_023112 NM_023934 NM_024015 NM_024017 NM_024045 NM_024490 NM_024496 NM_024561 NM_024670 NM_024704 NM_024756 NM_024761 NM_024824 NM_024836 NM_024865 NM_024887 NM_024953 NM_024996 NM_025000 NM_025047 NM_025063 NM_025134 NM_025160 NM_025191 NM_025208 NM_030627 NM_030661 NM_030885 NM_030937 NM_030938 NM_030950 NM_030984 NM_031268 NM_031427 NM_031431 NM_031435 NM_031437 NM_031453 NM_031461 NM_031463 NM_031886 NM_031887 NM_031888 NM_031891 NM_031912 NM_032046 NM_032105 NM_032148 NM_032186 NM_032208 NM_032256 NM_032294 NM_032335 NM_032354 NM_032379 NM_032389 NM_032439 NM_032505 NM_032554 NM_032682 NM_032788 NM_032828 NM_032853 NM_032861 NM_032869 NM_032873 NM_032928 NM_032943 NM_032975 NM_032980 NM_033135 NM_033346 NM_033387 NM_033407 NM_033428 NM_033496 NM_033497 NM_033498 NM_033500 NM_033505 NM_033637 NM_052886 NM_052910 NM_052916 NM_052923 NM_052954 NM_052987 NM_052988 NM_054027 NM_057169 NM_057170 NM_057175 NM_058166 NM_058237 NM_078483 NM_078487 NM_080546 NM_080591 NM_080645 NM_080796 NM_080832 NM_080860 NM_130768 NM_130797 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_130845 NM_130846 NM_133262 NM_133326 NM_133334 NM_133468 NM_133486 NM_133496 NM_134264 NM_134422 NM_134423 NM_134424 NM_134433 NM_134441 NM_138361 NM_138376 NM_138400 NM_138409 NM_138494 NM_138573 NM_138633 NM_138640 NM_138701 NM_138811 NM_139276 NM_139316 NM_144581 NM_144588 NM_144621 NM_144632 NM_144633 NM_144647 NM_144767 NM_145030 NM_145060 NM_145239 NM_145261 NM_145265 NM_145285 NM_145753 NM_147134 NM_147202 NM_148170 NM_148842 NM_152289 NM_152301 NM_152384 NM_152387 NM_152395 NM_152407 NM_152417 NM_152418 NM_152470 NM_152527 NM_152546 NM_152608 NM_152641 NM_152654 NM_152655 NM_152721 NM_152731 NM_152737 NM_152754 NM_152758 NM_152776 NM_152789 NM_152792 NM_152879 NM_152991 NM_153220 NM_153260 NM_153346 NM_153381 NM_153608 NM_153611 NM_153631 NM_153632 NM_153816 NM_170609 NM_170731 NM_170732 NM_170733 NM_170734 NM_170735 NM_170750 NM_170784 NM_171825 NM_172070 NM_172206 NM_172214 NM_172215 NM_173075 NM_173454 NM_173455 NM_173456 NM_173457 NM_173468 NM_173576 NM_173602 NM_173650 NM_173683 NM_173791 NM_173817 NM_173829 NM_173841 NM_173842 NM_173843 NM_173854 NM_174890 NM_174911 NM_174950 NM_175854 NM_175866 NM_175918 NM_176787 NM_176789 NM_177532 NM_177555 NM_177558 NM_178134 NM_178326 NM_178450 NM_178500 NM_178544 NM_178554 NM_178571 NM_178579 NM_178815 NM_178818 NM_181076 NM_181077 NM_181481 NM_181482 NM_181483 NM_181746 NM_181862 NM_181863 NM_181864 NM_181865 NM_181866 NM_182490 NM_182499 NM_182500 NM_182557 NM_182596 NM_182665 NM_182688 NM_182948 NM_183065 NM_183078 NM_183376 NM_194283 NM_194286 NM_194298 NM_194317 NM_194318 NM_194352 NM_197941 NM_198074 NM_198157 NM_198236 NM_198243 NM_198449 NM_198492 NM_198503 NM_198569 NM_198596 NM_198686 NM_198793 NM_198835 NM_198845 NM_198846 NM_198968 NM_198989 NM_198992 NM_199054 NM_199126 NM_199189 NM_199327 NM_199461 NM_199513 NM_201259 NM_201260 NM_201261 NM_201269 NM_201431 NM_201432 NM_201433 NM_203349 NM_203372 NM_203381 NM_203417 NM_203418 NM_203453 NM_203462 NM_203506 NM_205861 NM_206819 NM_206820 NM_206821 NM_206853 NM_206854 NM_206855 NM_206860 NM_206861 NM_206862 NM_206866 NM_206907 NM_206927 NM_206928 NM_206929 NM_206930 NM_207119 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207380 NM_207412 NM_207443 NM_207445 NM_207463 NM_207491 NM_207499 NM_207507 NM_207660 NM_207661 NM_207662 NM_213606 NM_213662 XM_027236 XM_031553 XM_032996 XM_042698 XM_044434 XM_067585 XM_087137 XM_087353 XM_088459 XM_114415 XM_172801 XM_208658 XM_208847 XM_209227 XM_209824 XM_290925 XM_292765 XM_370636 XM_370837 XM_370843 XM_370909 XM_370917 XM_370932 XM_371254 XM_371680 XM_371783 XM_371933 XM_372050 XM_372117 XM_372584 XM_373704 XM_374399 XM_374491 XM_375033 XM_375152 XM_375373 XM_375608 XM_375803 XM_375838 XM_375853 XM_376148 XM_376165 XM_376269 XM_376386 XM_376423 XM_378273 XM_378617 XM_378655 XM_378735 XM_378751 XM_378799 XM_378859 XM_379030 XM_379230 XM_379280 XM_379355 XM_379359 XM_379373 XM_379403 XM_379432 XM_379459 XM_379584 XM_495807 XM_495909 XM_495990 XM_496241 XM_496513 XM_496726 XM_497036 XM_498444 XM_498452 XM_498463 XM_498467 XM_498563 XM_498572 XM_498727 XM_498752 XM_498825 XM_498853 XM_498862 XM_498988 XM_499068 XM_499187 XM_499502 XM_499519 XM_499574 XM_499593 XM_499597 XR_000273	Genes with multiple seed matches: NM_001009956 NM_001009960 NM_001015045 NM_001245 NM_002605 NM_003412 NM_003692 NM_005188 NM_005840 NM_005845 NM_006048 NM_013276 NM_013277 NM_014399 NM_014883 NM_015076 NM_015975 NM_016205 NM_016206 NM_018555 NM_019022 NM_020988 NM_021255 NM_025063 NM_032853 NM_078483 NM_133496 NM_134264 NM_138494 NM_153346 NM_173454 NM_173455 NM_173456 NM_173457 NM_198569 NM_198845 NM_198846 XM_042698

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA