VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"ggaauuguguacuggaugcgc"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
980
.
Total Genes with multiple seed matches:
57
.
Genes with at least one seed match:
NM_000092 NM_000219 NM_000278 NM_000296 NM_000329 NM_000334 NM_000391 NM_000447 NM_000452 NM_000458 NM_000476 NM_000503 NM_000511 NM_000537 NM_000602 NM_000664 NM_000719 NM_000721 NM_000761 NM_000764 NM_000834 NM_000838 NM_000891 NM_000899 NM_000901 NM_000907 NM_000937 NM_000983 NM_001001344 NM_001001433 NM_001001434 NM_001001691 NM_001001693 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001002034 NM_001002231 NM_001002232 NM_001002252 NM_001002762 NM_001002860 NM_001003652 NM_001003674 NM_001003675 NM_001003891 NM_001003954 NM_001004325 NM_001004342 NM_001004417 NM_001004421 NM_001005366 NM_001005388 NM_001005407 NM_001005737 NM_001005752 NM_001007271 NM_001007274 NM_001007275 NM_001007527 NM_001008211 NM_001008212 NM_001008213 NM_001008389 NM_001008408 NM_001008490 NM_001008707 NM_001009553 NM_001009944 NM_001010874 NM_001010910 NM_001010913 NM_001010918 NM_001010926 NM_001010938 NM_001010971 NM_001011545 NM_001011554 NM_001012329 NM_001012418 NM_001012968 NM_001012981 NM_001013000 NM_001013005 NM_001013031 NM_001013670 NM_001013679 NM_001013712 NM_001013734 NM_001013839 NM_001014374 NM_001014809 NM_001017395 NM_001017440 NM_001017995 NM_001018009 NM_001018067 NM_001018068 NM_001018069 NM_001018100 NM_001018101 NM_001018111 NM_001020658 NM_001024736 NM_001024808 NM_001024843 NM_001024959 NM_001024960 NM_001025108 NM_001044 NM_001095 NM_001204 NM_001222 NM_001259 NM_001300 NM_001313 NM_001419 NM_001421 NM_001513 NM_001543 NM_001614 NM_001640 NM_001666 NM_001720 NM_001740 NM_001767 NM_001936 NM_001964 NM_001980 NM_002025 NM_002038 NM_002052 NM_002092 NM_002105 NM_002129 NM_002193 NM_002285 NM_002304 NM_002359 NM_002412 NM_002442 NM_002451 NM_002513 NM_002594 NM_002599 NM_002632 NM_002648 NM_002695 NM_002699 NM_002725 NM_002880 NM_002914 NM_002936 NM_002957 NM_002994 NM_003045 NM_003108 NM_003189 NM_003200 NM_003226 NM_003243 NM_003325 NM_003337 NM_003353 NM_003361 NM_003417 NM_003423 NM_003489 NM_003498 NM_003574 NM_003604 NM_003605 NM_003639 NM_003737 NM_003763 NM_003872 NM_003898 NM_003899 NM_003913 NM_003936 NM_003950 NM_003987 NM_003988 NM_003989 NM_003990 NM_003994 NM_004035 NM_004040 NM_004103 NM_004106 NM_004177 NM_004186 NM_004234 NM_004287 NM_004306 NM_004327 NM_004338 NM_004339 NM_004358 NM_004416 NM_004430 NM_004434 NM_004451 NM_004457 NM_004481 NM_004486 NM_004505 NM_004513 NM_004571 NM_004586 NM_004599 NM_004649 NM_004729 NM_004745 NM_004756 NM_004838 NM_004844 NM_004845 NM_004905 NM_004928 NM_004936 NM_004942 NM_004985 NM_004996 NM_004997 NM_005010 NM_005036 NM_005116 NM_005130 NM_005137 NM_005143 NM_005168 NM_005169 NM_005187 NM_005197 NM_005214 NM_005226 NM_005262 NM_005336 NM_005338 NM_005368 NM_005397 NM_005418 NM_005430 NM_005453 NM_005468 NM_005551 NM_005562 NM_005603 NM_005643 NM_005670 NM_005682 NM_005699 NM_005718 NM_005737 NM_005738 NM_005781 NM_005858 NM_005901 NM_005969 NM_005990 NM_006023 NM_006037 NM_006047 NM_006208 NM_006213 NM_006224 NM_006230 NM_006272 NM_006312 NM_006317 NM_006371 NM_006399 NM_006464 NM_006472 NM_006505 NM_006521 NM_006640 NM_006646 NM_006725 NM_006738 NM_006767 NM_006774 NM_006795 NM_006908 NM_006931 NM_006943 NM_006989 NM_007030 NM_007087 NM_007088 NM_007107 NM_007200 NM_007203 NM_007219 NM_007229 NM_007292 NM_007345 NM_007373 NM_012072 NM_012074 NM_012075 NM_012099 NM_012156 NM_012174 NM_012231 NM_012275 NM_012325 NM_012458 NM_012478 NM_012486 NM_013246 NM_013250 NM_013276 NM_013286 NM_013323 NM_013345 NM_013400 NM_013441 NM_014007 NM_014080 NM_014146 NM_014226 NM_014363 NM_014388 NM_014417 NM_014431 NM_014461 NM_014603 NM_014610 NM_014644 NM_014646 NM_014655 NM_014676 NM_014737 NM_014743 NM_014762 NM_014764 NM_014772 NM_014792 NM_014801 NM_014838 NM_014844 NM_014873 NM_014891 NM_014909 NM_014919 NM_014926 NM_014978 NM_015001 NM_015008 NM_015057 NM_015079 NM_015088 NM_015090 NM_015094 NM_015133 NM_015172 NM_015205 NM_015219 NM_015227 NM_015246 NM_015253 NM_015254 NM_015259 NM_015266 NM_015277 NM_015305 NM_015310 NM_015321 NM_015326 NM_015353 NM_015375 NM_015378 NM_015393 NM_015438 NM_015545 NM_015560 NM_015576 NM_015640 NM_015693 NM_015836 NM_015889 NM_015898 NM_015979 NM_015995 NM_016206 NM_016219 NM_016269 NM_016456 NM_016464 NM_016529 NM_016579 NM_017422 NM_017443 NM_017482 NM_017484 NM_017487 NM_017519 NM_017520 NM_017542 NM_017590 NM_017594 NM_017617 NM_017622 NM_017626 NM_017629 NM_017649 NM_017660 NM_017662 NM_017713 NM_017732 NM_017896 NM_017902 NM_017946 NM_017967 NM_017999 NM_018013 NM_018022 NM_018027 NM_018062 NM_018156 NM_018168 NM_018171 NM_018205 NM_018216 NM_018224 NM_018239 NM_018271 NM_018292 NM_018450 NM_018463 NM_018579 NM_018668 NM_018697 NM_018711 NM_018890 NM_018941 NM_019862 NM_019898 NM_019899 NM_019900 NM_019901 NM_019902 NM_020039 NM_020225 NM_020228 NM_020248 NM_020310 NM_020338 NM_020362 NM_020381 NM_020385 NM_020405 NM_020448 NM_020530 NM_020552 NM_020553 NM_020731 NM_020732 NM_020738 NM_020761 NM_020777 NM_020795 NM_020830 NM_020858 NM_020935 NM_020939 NM_020962 NM_020972 NM_020993 NM_020995 NM_021079 NM_021080 NM_021098 NM_021130 NM_021141 NM_021156 NM_021202 NM_021255 NM_021574 NM_021872 NM_021873 NM_021874 NM_021905 NM_021922 NM_021945 NM_021949 NM_021973 NM_021980 NM_022003 NM_022040 NM_022114 NM_022156 NM_022169 NM_022444 NM_022469 NM_022489 NM_022720 NM_022730 NM_022755 NM_022766 NM_022822 NM_022829 NM_022872 NM_022873 NM_023018 NM_023067 NM_023109 NM_024009 NM_024076 NM_024297 NM_024301 NM_024522 NM_024613 NM_024627 NM_024643 NM_024761 NM_024771 NM_024791 NM_024871 NM_024878 NM_024881 NM_024955 NM_024989 NM_025021 NM_025082 NM_025090 NM_025194 NM_025197 NM_025205 NM_025230 NM_025240 NM_025241 NM_030571 NM_030582 NM_030589 NM_030594 NM_030636 NM_030645 NM_030765 NM_030815 NM_030817 NM_030891 NM_030914 NM_030915 NM_030919 NM_031265 NM_031279 NM_031439 NM_031462 NM_031468 NM_032041 NM_032048 NM_032160 NM_032189 NM_032236 NM_032237 NM_032251 NM_032262 NM_032286 NM_032287 NM_032376 NM_032459 NM_032463 NM_032464 NM_032508 NM_032569 NM_032590 NM_032607 NM_032656 NM_032705 NM_032706 NM_032711 NM_032737 NM_032823 NM_032933 NM_032994 NM_033133 NM_033259 NM_033261 NM_033296 NM_033315 NM_033332 NM_033346 NM_033360 NM_033392 NM_033393 NM_033449 NM_033514 NM_052855 NM_052897 NM_052918 NM_053005 NM_053277 NM_058168 NM_058169 NM_058170 NM_058172 NM_058187 NM_058189 NM_058192 NM_058246 NM_078487 NM_080392 NM_080625 NM_080657 NM_080662 NM_080671 NM_080730 NM_080731 NM_130444 NM_130445 NM_130446 NM_130469 NM_130786 NM_130797 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_133175 NM_133176 NM_133265 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133463 NM_133484 NM_133634 NM_133635 NM_138288 NM_138298 NM_138299 NM_138300 NM_138372 NM_138402 NM_138415 NM_138467 NM_138706 NM_138788 NM_138958 NM_139028 NM_139058 NM_139157 NM_144578 NM_144613 NM_144618 NM_144621 NM_144767 NM_145039 NM_145117 NM_145175 NM_145206 NM_145280 NM_145301 NM_145735 NM_145870 NM_145871 NM_147194 NM_148903 NM_152244 NM_152253 NM_152302 NM_152330 NM_152416 NM_152429 NM_152556 NM_152613 NM_152638 NM_152793 NM_152838 NM_153029 NM_153033 NM_153239 NM_153348 NM_153355 NM_153360 NM_153367 NM_153375 NM_153616 NM_153617 NM_153618 NM_153619 NM_153690 NM_153691 NM_153708 NM_153710 NM_153757 NM_153832 NM_170773 NM_170774 NM_172020 NM_172058 NM_172059 NM_172060 NM_172169 NM_172170 NM_172171 NM_172172 NM_172173 NM_172217 NM_172239 NM_172369 NM_173042 NM_173043 NM_173044 NM_173055 NM_173056 NM_173057 NM_173058 NM_173065 NM_173075 NM_173170 NM_173174 NM_173175 NM_173176 NM_173470 NM_173477 NM_173536 NM_173551 NM_173651 NM_173681 NM_173682 NM_173808 NM_174899 NM_175567 NM_175571 NM_175747 NM_175863 NM_175907 NM_175931 NM_176095 NM_176814 NM_177403 NM_177442 NM_177996 NM_178008 NM_178129 NM_178422 NM_178448 NM_178519 NM_178520 NM_178562 NM_178850 NM_181268 NM_181270 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181290 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301 NM_181314 NM_181357 NM_181471 NM_181481 NM_181482 NM_181483 NM_181776 NM_181826 NM_181827 NM_182497 NM_182578 NM_182586 NM_182635 NM_182661 NM_182740 NM_182964 NM_183050 NM_194295 NM_194310 NM_194314 NM_194327 NM_194356 NM_194434 NM_198042 NM_198138 NM_198153 NM_198155 NM_198270 NM_198282 NM_198334 NM_198335 NM_198476 NM_198488 NM_198513 NM_198541 NM_198582 NM_198686 NM_198829 NM_198835 NM_198990 NM_199076 NM_199262 NM_199324 NM_199437 NM_199438 NM_199439 NM_199454 NM_199461 NM_199462 NM_201263 NM_201266 NM_201279 NM_201348 NM_201524 NM_201525 NM_203282 NM_203327 NM_203346 NM_203372 NM_203377 NM_203378 NM_203381 NM_203412 NM_203430 NM_203431 NM_203459 NM_206833 NM_206835 NM_206909 NM_207006 NM_207119 NM_207326 NM_207349 NM_207395 NM_207438 NM_207440 NM_207453 NM_207468 NM_207470 NM_207483 NM_207504 NM_207510 NM_207511 NM_207514 NM_212460 NM_212464 NM_212467 NM_212530 NM_213618 XM_041126 XM_042698 XM_042936 XM_046437 XM_047610 XM_048898 XM_050278 XM_051017 XM_051862 XM_059482 XM_062872 XM_114415 XM_117514 XM_166132 XM_166140 XM_209607 XM_211079 XM_290401 XM_290867 XM_290922 XM_290936 XM_290948 XM_291671 XM_294993 XM_370849 XM_371151 XM_371286 XM_371299 XM_371423 XM_371479 XM_371501 XM_372128 XM_372267 XM_373431 XM_373693 XM_373786 XM_373798 XM_373821 XM_373950 XM_374110 XM_374113 XM_374163 XM_374803 XM_375292 XM_375491 XM_375697 XM_375698 XM_376189 XM_376257 XM_376602 XM_376631 XM_376784 XM_376902 XM_378202 XM_378247 XM_378331 XM_378523 XM_378550 XM_378625 XM_378660 XM_378661 XM_378798 XM_378858 XM_378908 XM_378914 XM_378982 XM_378983 XM_378993 XM_379023 XM_379060 XM_379309 XM_379432 XM_379452 XM_379650 XM_379705 XM_379820 XM_379866 XM_379877 XM_495888 XM_495984 XM_496070 XM_496346 XM_496358 XM_496895 XM_496960 XM_496981 XM_496983 XM_496984 XM_496985 XM_497080 XM_497089 XM_498449 XM_498459 XM_498511 XM_498553 XM_498582 XM_498614 XM_498693 XM_498727 XM_498752 XM_498816 XM_498884 XM_498898 XM_498917 XM_498929 XM_499003 XM_499056 XM_499130 XM_499152 XM_499155 XM_499164 XM_499309 XM_499323 XM_499501 XM_499503 XM_499579 XM_499589 XR_000167 XR_000184 XR_000227 XR_000275 XR_000294
Genes with multiple seed matches:
NM_001003674 NM_001003675 NM_001008707 NM_001012418 NM_001012981 NM_001024843 NM_001421 NM_001543 NM_001980 NM_002304 NM_004338 NM_004434 NM_004505 NM_004936 NM_006640 NM_006738 NM_007200 NM_014388 NM_014610 NM_014919 NM_015079 NM_015088 NM_015266 NM_017542 NM_017896 NM_017967 NM_020448 NM_020738 NM_025090 NM_025197 NM_032705 NM_078487 NM_133332 NM_133333 NM_144618 NM_144767 NM_145117 NM_153029 NM_153690 NM_170773 NM_176095 NM_178129 NM_178448 NM_181481 NM_181482 NM_181483 NM_182964 NM_194356 NM_198582 XM_375698 XM_376602 XM_378202 XM_378858 XM_379820 XM_495888 XM_497080 XM_498511
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)