VIRsiRNAdb

Predicted off-targets seeds for siRNA "uuuggagcugaugccguag" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :616.
Total Genes with multiple seed matches: 23.
Genes with at least one seed match: NM_000092 NM_000125 NM_000210 NM_000322 NM_000330 NM_000337 NM_000430 NM_000458 NM_000564 NM_000569 NM_000570 NM_000663 NM_000833 NM_000892 NM_000953 NM_001001188 NM_001001330 NM_001001419 NM_001001420 NM_001001852 NM_001002296 NM_001002860 NM_001002861 NM_001003674 NM_001003675 NM_001003676 NM_001003677 NM_001003713 NM_001003714 NM_001003789 NM_001003845 NM_001003937 NM_001003940 NM_001003942 NM_001003943 NM_001005303 NM_001006113 NM_001007279 NM_001008408 NM_001008410 NM_001008539 NM_001009899 NM_001009923 NM_001009924 NM_001009925 NM_001010850 NM_001010980 NM_001012270 NM_001012271 NM_001012329 NM_001012631 NM_001012632 NM_001012633 NM_001012634 NM_001012635 NM_001012636 NM_001012718 NM_001013644 NM_001013676 NM_001013724 NM_001013726 NM_001015051 NM_001017926 NM_001017995 NM_001018050 NM_001018051 NM_001018052 NM_001018100 NM_001018101 NM_001024630 NM_001025100 NM_001037 NM_001044 NM_001168 NM_001190 NM_001194 NM_001315 NM_001323 NM_001360 NM_001378 NM_001418 NM_001447 NM_001543 NM_001560 NM_001614 NM_001656 NM_001717 NM_001763 NM_001793 NM_001798 NM_001908 NM_001938 NM_001949 NM_001980 NM_001981 NM_001982 NM_002024 NM_002080 NM_002126 NM_002160 NM_002379 NM_002501 NM_002547 NM_002558 NM_002569 NM_002582 NM_002613 NM_002636 NM_002820 NM_002959 NM_002971 NM_003046 NM_003048 NM_003135 NM_003137 NM_003189 NM_003255 NM_003272 NM_003320 NM_003382 NM_003409 NM_003458 NM_003486 NM_003627 NM_003888 NM_003899 NM_004030 NM_004093 NM_004112 NM_004113 NM_004128 NM_004148 NM_004204 NM_004216 NM_004221 NM_004293 NM_004338 NM_004348 NM_004350 NM_004368 NM_004438 NM_004454 NM_004488 NM_004518 NM_004705 NM_004745 NM_004768 NM_004776 NM_004836 NM_004850 NM_004863 NM_004889 NM_004913 NM_004965 NM_004973 NM_004991 NM_005012 NM_005178 NM_005253 NM_005342 NM_005369 NM_005386 NM_005435 NM_005439 NM_005480 NM_005546 NM_005575 NM_005586 NM_005613 NM_005626 NM_005631 NM_005715 NM_005795 NM_005903 NM_006045 NM_006074 NM_006137 NM_006162 NM_006275 NM_006276 NM_006301 NM_006303 NM_006313 NM_006358 NM_006371 NM_006385 NM_006675 NM_006693 NM_006710 NM_006895 NM_006898 NM_006916 NM_006925 NM_007014 NM_007045 NM_007081 NM_007085 NM_007170 NM_007203 NM_007210 NM_007222 NM_007306 NM_007371 NM_012098 NM_012102 NM_012288 NM_012296 NM_012346 NM_012397 NM_012425 NM_012437 NM_013236 NM_013242 NM_013255 NM_013260 NM_013275 NM_013276 NM_013280 NM_013390 NM_013943 NM_014145 NM_014279 NM_014286 NM_014368 NM_014403 NM_014615 NM_014636 NM_014675 NM_014682 NM_014690 NM_014757 NM_014774 NM_014850 NM_014851 NM_014860 NM_014932 NM_014934 NM_014972 NM_014991 NM_015056 NM_015094 NM_015155 NM_015205 NM_015245 NM_015257 NM_015310 NM_015344 NM_015352 NM_015393 NM_015449 NM_015460 NM_015526 NM_015537 NM_015553 NM_015570 NM_015855 NM_015945 NM_015946 NM_015993 NM_016028 NM_016040 NM_016096 NM_016099 NM_016141 NM_016142 NM_016169 NM_016172 NM_016331 NM_016339 NM_016383 NM_016512 NM_016544 NM_016553 NM_016563 NM_017437 NM_017555 NM_017621 NM_017673 NM_017713 NM_017751 NM_017762 NM_017763 NM_017802 NM_017825 NM_017951 NM_018017 NM_018121 NM_018170 NM_018228 NM_018234 NM_018267 NM_018361 NM_018363 NM_018389 NM_018444 NM_018463 NM_018660 NM_018669 NM_018706 NM_018945 NM_018948 NM_018953 NM_018981 NM_019001 NM_019022 NM_019026 NM_019034 NM_020184 NM_020193 NM_020195 NM_020197 NM_020248 NM_020407 NM_020546 NM_020645 NM_020673 NM_020686 NM_020750 NM_020999 NM_021032 NM_021036 NM_021116 NM_021161 NM_021638 NM_021925 NM_021961 NM_022119 NM_022368 NM_022460 NM_022725 NM_022818 NM_022831 NM_022894 NM_022899 NM_023002 NM_024016 NM_024052 NM_024086 NM_024104 NM_024113 NM_024511 NM_024536 NM_024552 NM_024619 NM_024719 NM_024768 NM_024866 NM_024876 NM_024885 NM_024941 NM_024989 NM_025083 NM_025147 NM_025191 NM_025208 NM_030621 NM_030623 NM_030626 NM_030648 NM_030650 NM_030808 NM_030940 NM_031268 NM_031466 NM_031888 NM_032041 NM_032042 NM_032167 NM_032189 NM_032367 NM_032704 NM_032728 NM_032732 NM_032735 NM_032836 NM_032859 NM_032905 NM_032998 NM_033135 NM_033161 NM_033227 NM_033228 NM_033315 NM_033503 NM_033668 NM_052827 NM_052970 NM_054027 NM_054114 NM_057177 NM_058169 NM_058206 NM_080491 NM_133373 NM_133467 NM_133632 NM_138317 NM_138318 NM_138338 NM_138444 NM_138467 NM_138492 NM_138694 NM_138703 NM_138726 NM_138740 NM_139012 NM_139014 NM_139246 NM_144494 NM_144579 NM_144590 NM_144611 NM_144683 NM_144709 NM_144964 NM_145006 NM_145042 NM_145119 NM_145308 NM_145891 NM_145892 NM_145893 NM_147780 NM_147781 NM_147782 NM_147783 NM_148920 NM_152133 NM_152253 NM_152261 NM_152270 NM_152275 NM_152346 NM_152399 NM_152412 NM_152475 NM_152498 NM_152527 NM_152556 NM_152557 NM_152622 NM_152675 NM_152687 NM_152690 NM_152701 NM_152724 NM_153010 NM_153031 NM_153033 NM_153212 NM_153254 NM_153256 NM_153360 NM_153462 NM_153463 NM_153683 NM_153690 NM_153712 NM_153718 NM_153719 NM_153837 NM_170601 NM_170696 NM_170697 NM_172387 NM_172388 NM_172389 NM_172390 NM_173073 NM_173179 NM_173468 NM_173477 NM_173522 NM_173602 NM_173610 NM_173623 NM_173698 NM_173831 NM_175039 NM_175040 NM_175056 NM_175571 NM_175726 NM_175898 NM_175920 NM_177438 NM_177972 NM_177978 NM_178011 NM_178509 NM_178562 NM_178585 NM_178823 NM_180989 NM_181359 NM_181430 NM_181431 NM_181481 NM_181482 NM_181483 NM_181689 NM_181712 NM_182488 NM_182500 NM_182580 NM_182585 NM_182626 NM_182915 NM_182960 NM_183050 NM_194290 NM_194303 NM_194356 NM_194428 NM_194429 NM_198189 NM_198452 NM_198484 NM_198537 NM_198585 NM_198595 NM_198855 NM_198859 NM_198964 NM_198968 NM_199160 NM_199175 NM_199229 NM_199423 NM_199424 NM_201277 NM_203306 NM_203381 NM_203400 NM_203451 NM_205846 NM_206909 NM_207306 NM_207309 NM_207333 NM_207357 NM_207372 NM_207387 NM_207388 NM_207460 NM_207470 NM_207500 NM_212464 NM_212467 NM_213612 XM_035497 XM_037523 XM_038150 XM_038436 XM_045421 XM_047610 XM_048592 XM_059929 XM_084529 XM_087672 XM_117117 XM_166132 XM_167044 XM_170658 XM_290597 XM_291170 XM_292717 XM_370878 XM_371117 XM_371141 XM_371184 XM_371254 XM_371369 XM_371706 XM_371933 XM_373561 XM_373865 XM_373883 XM_373981 XM_375373 XM_376018 XM_376680 XM_378684 XM_378735 XM_378795 XM_378941 XM_379030 XM_379235 XM_379276 XM_379309 XM_379391 XM_379406 XM_379547 XM_379934 XM_380103 XM_495888 XM_496467 XM_496618 XM_498469 XM_498500 XM_498528 XM_498572 XM_498683 XM_498696 XM_498706 XM_498841 XM_498857 XM_498945 XM_499125 XM_499362 XM_499564 XR_000227 XR_000254 XR_000259 XR_000266	Genes with multiple seed matches: NM_000430 NM_001003940 NM_001003942 NM_001003943 NM_001008539 NM_001614 NM_001793 NM_003046 NM_003320 NM_004518 NM_004973 NM_006301 NM_012288 NM_014279 NM_014682 NM_030626 NM_032732 NM_033503 NM_153462 NM_153463 NM_173477 NM_177972 XM_059929

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA