VIRsiRNAdb

Predicted off-targets seeds for siRNA "uaugugguuauacguaaac" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1094.
Total Genes with multiple seed matches: 59.
Genes with at least one seed match: NM_000055 NM_000065 NM_000077 NM_000093 NM_000134 NM_000186 NM_000216 NM_000233 NM_000245 NM_000262 NM_000332 NM_000350 NM_000397 NM_000401 NM_000416 NM_000417 NM_000451 NM_000481 NM_000493 NM_000494 NM_000527 NM_000534 NM_000555 NM_000663 NM_000733 NM_000757 NM_000806 NM_000838 NM_000849 NM_000859 NM_000891 NM_000895 NM_001001343 NM_001001349 NM_001001395 NM_001001419 NM_001001420 NM_001001481 NM_001001482 NM_001001668 NM_001001686 NM_001001709 NM_001001890 NM_001001995 NM_001002799 NM_001002909 NM_001003674 NM_001003675 NM_001003694 NM_001003712 NM_001003789 NM_001003927 NM_001004285 NM_001004286 NM_001004299 NM_001004360 NM_001005303 NM_001005473 NM_001005845 NM_001006636 NM_001007278 NM_001007466 NM_001008387 NM_001008408 NM_001008493 NM_001008537 NM_001008540 NM_001008564 NM_001008710 NM_001008711 NM_001008726 NM_001008728 NM_001009899 NM_001009905 NM_001009999 NM_001010913 NM_001010917 NM_001010982 NM_001011515 NM_001011516 NM_001011655 NM_001011703 NM_001012981 NM_001013399 NM_001013415 NM_001013644 NM_001013696 NM_001013713 NM_001013717 NM_001013718 NM_001017369 NM_001017395 NM_001017424 NM_001017425 NM_001017924 NM_001017963 NM_001018060 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001018102 NM_001018104 NM_001018111 NM_001022 NM_001024075 NM_001024646 NM_001025100 NM_001025107 NM_001044 NM_001045 NM_001067 NM_001100 NM_001111 NM_001114 NM_001125 NM_001131 NM_001160 NM_001241 NM_001259 NM_001356 NM_001386 NM_001396 NM_001402 NM_001412 NM_001419 NM_001429 NM_001430 NM_001438 NM_001454 NM_001457 NM_001483 NM_001554 NM_001616 NM_001627 NM_001638 NM_001650 NM_001660 NM_001661 NM_001754 NM_001757 NM_001793 NM_001845 NM_001879 NM_001901 NM_001932 NM_001949 NM_001969 NM_001982 NM_002006 NM_002024 NM_002063 NM_002107 NM_002113 NM_002210 NM_002221 NM_002267 NM_002287 NM_002293 NM_002299 NM_002336 NM_002357 NM_002449 NM_002460 NM_002469 NM_002590 NM_002641 NM_002656 NM_002707 NM_002716 NM_002729 NM_002819 NM_002867 NM_002906 NM_002971 NM_003010 NM_003012 NM_003016 NM_003022 NM_003083 NM_003103 NM_003108 NM_003112 NM_003144 NM_003150 NM_003155 NM_003188 NM_003189 NM_003201 NM_003246 NM_003262 NM_003265 NM_003281 NM_003320 NM_003356 NM_003409 NM_003414 NM_003465 NM_003467 NM_003473 NM_003505 NM_003605 NM_003615 NM_003629 NM_003645 NM_003647 NM_003681 NM_003716 NM_003719 NM_003774 NM_003816 NM_003856 NM_003927 NM_004028 NM_004067 NM_004085 NM_004262 NM_004272 NM_004274 NM_004296 NM_004311 NM_004338 NM_004379 NM_004402 NM_004412 NM_004441 NM_004488 NM_004507 NM_004539 NM_004598 NM_004634 NM_004653 NM_004744 NM_004745 NM_004764 NM_004795 NM_004817 NM_004850 NM_004859 NM_004862 NM_004863 NM_004896 NM_004898 NM_004936 NM_004951 NM_004952 NM_004958 NM_005067 NM_005076 NM_005095 NM_005160 NM_005168 NM_005190 NM_005233 NM_005336 NM_005338 NM_005348 NM_005388 NM_005397 NM_005409 NM_005410 NM_005436 NM_005467 NM_005476 NM_005527 NM_005536 NM_005539 NM_005570 NM_005578 NM_005584 NM_005587 NM_005647 NM_005665 NM_005715 NM_005717 NM_005719 NM_005738 NM_005749 NM_005798 NM_005829 NM_005841 NM_005859 NM_005903 NM_005911 NM_005931 NM_005950 NM_005951 NM_005966 NM_006020 NM_006045 NM_006134 NM_006138 NM_006141 NM_006152 NM_006166 NM_006187 NM_006190 NM_006256 NM_006275 NM_006306 NM_006346 NM_006347 NM_006350 NM_006352 NM_006371 NM_006387 NM_006417 NM_006422 NM_006430 NM_006460 NM_006470 NM_006500 NM_006544 NM_006558 NM_006559 NM_006603 NM_006605 NM_006621 NM_006626 NM_006683 NM_006699 NM_006712 NM_006718 NM_006734 NM_006745 NM_006749 NM_006791 NM_006867 NM_006904 NM_006908 NM_006931 NM_007005 NM_007006 NM_007054 NM_007067 NM_007081 NM_007107 NM_007157 NM_007174 NM_007175 NM_007195 NM_007210 NM_007221 NM_007306 NM_007345 NM_009586 NM_012069 NM_012123 NM_012153 NM_012157 NM_012180 NM_012204 NM_012207 NM_012231 NM_012249 NM_012288 NM_012301 NM_012308 NM_012309 NM_012382 NM_012397 NM_012420 NM_012431 NM_012464 NM_012465 NM_012479 NM_013229 NM_013243 NM_013262 NM_013275 NM_013386 NM_013390 NM_013431 NM_014043 NM_014089 NM_014117 NM_014142 NM_014210 NM_014217 NM_014243 NM_014252 NM_014333 NM_014397 NM_014429 NM_014552 NM_014554 NM_014585 NM_014608 NM_014615 NM_014616 NM_014667 NM_014728 NM_014732 NM_014736 NM_014754 NM_014765 NM_014773 NM_014788 NM_014795 NM_014812 NM_014838 NM_014867 NM_014874 NM_014880 NM_014888 NM_014897 NM_014914 NM_014923 NM_014934 NM_014970 NM_014974 NM_014990 NM_015008 NM_015013 NM_015035 NM_015045 NM_015064 NM_015115 NM_015133 NM_015137 NM_015155 NM_015225 NM_015257 NM_015274 NM_015286 NM_015299 NM_015336 NM_015352 NM_015355 NM_015393 NM_015409 NM_015415 NM_015447 NM_015455 NM_015458 NM_015466 NM_015493 NM_015532 NM_015553 NM_015589 NM_015635 NM_015840 NM_015841 NM_015855 NM_015947 NM_015981 NM_015983 NM_015986 NM_016025 NM_016076 NM_016083 NM_016097 NM_016146 NM_016201 NM_016221 NM_016234 NM_016247 NM_016272 NM_016304 NM_016389 NM_016403 NM_016422 NM_016485 NM_016492 NM_016518 NM_016544 NM_016559 NM_016605 NM_016613 NM_016622 NM_016626 NM_017410 NM_017506 NM_017516 NM_017544 NM_017546 NM_017564 NM_017577 NM_017595 NM_017634 NM_017656 NM_017694 NM_017714 NM_017741 NM_017742 NM_017785 NM_017822 NM_017853 NM_017866 NM_017904 NM_017923 NM_017938 NM_017964 NM_018018 NM_018027 NM_018038 NM_018047 NM_018086 NM_018121 NM_018130 NM_018140 NM_018189 NM_018191 NM_018194 NM_018212 NM_018214 NM_018263 NM_018264 NM_018266 NM_018269 NM_018280 NM_018299 NM_018312 NM_018315 NM_018472 NM_018492 NM_018556 NM_018566 NM_018640 NM_018657 NM_018672 NM_018706 NM_018712 NM_018717 NM_018890 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_018945 NM_019029 NM_019060 NM_019092 NM_019099 NM_019100 NM_019558 NM_019605 NM_020141 NM_020153 NM_020163 NM_020182 NM_020215 NM_020245 NM_020347 NM_020425 NM_020438 NM_020453 NM_020472 NM_020473 NM_020666 NM_020686 NM_020710 NM_020715 NM_020768 NM_020774 NM_020776 NM_020782 NM_020803 NM_020813 NM_020830 NM_020841 NM_020868 NM_020899 NM_020909 NM_020917 NM_020957 NM_021076 NM_021127 NM_021136 NM_021167 NM_021217 NM_021260 NM_021620 NM_021638 NM_021644 NM_021645 NM_021947 NM_021966 NM_021977 NM_021979 NM_021999 NM_022114 NM_022119 NM_022122 NM_022143 NM_022150 NM_022336 NM_022368 NM_022377 NM_022459 NM_022461 NM_022495 NM_022552 NM_022728 NM_022739 NM_022761 NM_022817 NM_022842 NM_023010 NM_023927 NM_024007 NM_024069 NM_024585 NM_024595 NM_024629 NM_024659 NM_024761 NM_024782 NM_024830 NM_024841 NM_024845 NM_024866 NM_024871 NM_024922 NM_024963 NM_024989 NM_025010 NM_025054 NM_025061 NM_025154 NM_025160 NM_025195 NM_030650 NM_030651 NM_030674 NM_030780 NM_030787 NM_030816 NM_030954 NM_030979 NM_031296 NM_031307 NM_031311 NM_031411 NM_031442 NM_031453 NM_031469 NM_031496 NM_031849 NM_031857 NM_031860 NM_031866 NM_031954 NM_031990 NM_031991 NM_032012 NM_032043 NM_032141 NM_032145 NM_032153 NM_032228 NM_032255 NM_032296 NM_032300 NM_032424 NM_032434 NM_032505 NM_032573 NM_032621 NM_032679 NM_032682 NM_032704 NM_032728 NM_032792 NM_032801 NM_032823 NM_032900 NM_032949 NM_032974 NM_033015 NM_033115 NM_033133 NM_033160 NM_033181 NM_033221 NM_033224 NM_033259 NM_033326 NM_033392 NM_033400 NM_033446 NM_033631 NM_033632 NM_033641 NM_052811 NM_052813 NM_052847 NM_052864 NM_052879 NM_052932 NM_052954 NM_052965 NM_053006 NM_053023 NM_053281 NM_058183 NM_058195 NM_058197 NM_058241 NM_078487 NM_080632 NM_080654 NM_080657 NM_080666 NM_080792 NM_080816 NM_080870 NM_101395 NM_130436 NM_130437 NM_130438 NM_130778 NM_130847 NM_133446 NM_133451 NM_133464 NM_133467 NM_133645 NM_134428 NM_134442 NM_138347 NM_138399 NM_138444 NM_138492 NM_138493 NM_138697 NM_138699 NM_138726 NM_138771 NM_138802 NM_138819 NM_138925 NM_138926 NM_138927 NM_139264 NM_139276 NM_139319 NM_144674 NM_144684 NM_144704 NM_144709 NM_144975 NM_144991 NM_145007 NM_145010 NM_145115 NM_145119 NM_145185 NM_145203 NM_145205 NM_145235 NM_145263 NM_145287 NM_145294 NM_145303 NM_145331 NM_145332 NM_145333 NM_145719 NM_145728 NM_145794 NM_147129 NM_147194 NM_148170 NM_148842 NM_148894 NM_152235 NM_152237 NM_152253 NM_152278 NM_152295 NM_152352 NM_152360 NM_152387 NM_152404 NM_152407 NM_152420 NM_152441 NM_152475 NM_152477 NM_152483 NM_152519 NM_152551 NM_152618 NM_152624 NM_152632 NM_152636 NM_152655 NM_152682 NM_152687 NM_152737 NM_152772 NM_152780 NM_152787 NM_152906 NM_152939 NM_152995 NM_152999 NM_153013 NM_153034 NM_153035 NM_153257 NM_153262 NM_153377 NM_153608 NM_153646 NM_153647 NM_153648 NM_153683 NM_153695 NM_153705 NM_153757 NM_153759 NM_153823 NM_170609 NM_171825 NM_171999 NM_172020 NM_172211 NM_172232 NM_172239 NM_172376 NM_172390 NM_173459 NM_173477 NM_173493 NM_173510 NM_173531 NM_173572 NM_173578 NM_173618 NM_173669 NM_173800 NM_175061 NM_175075 NM_175629 NM_175733 NM_175847 NM_175870 NM_176081 NM_176083 NM_176084 NM_176085 NM_176086 NM_177454 NM_177539 NM_177540 NM_177541 NM_177972 NM_177983 NM_178037 NM_178038 NM_178039 NM_178040 NM_178151 NM_178152 NM_178153 NM_178170 NM_178435 NM_178441 NM_178450 NM_178498 NM_178514 NM_178557 NM_180991 NM_181291 NM_181481 NM_181482 NM_181483 NM_181501 NM_181706 NM_181861 NM_181868 NM_181869 NM_182506 NM_182557 NM_182558 NM_182568 NM_182580 NM_182598 NM_182752 NM_182775 NM_182920 NM_182934 NM_182935 NM_182960 NM_183004 NM_183382 NM_183393 NM_183394 NM_194071 NM_194290 NM_194301 NM_194324 NM_198074 NM_198153 NM_198157 NM_198181 NM_198182 NM_198312 NM_198402 NM_198465 NM_198503 NM_198525 NM_198563 NM_198595 NM_198795 NM_198829 NM_198926 NM_198968 NM_198991 NM_199050 NM_199072 NM_199126 NM_199131 NM_199169 NM_199170 NM_199171 NM_199188 NM_199190 NM_199324 NM_199327 NM_199454 NM_201262 NM_201574 NM_201629 NM_203301 NM_203346 NM_203379 NM_203380 NM_203381 NM_203394 NM_203395 NM_203406 NM_203423 NM_205768 NM_205846 NM_205855 NM_206594 NM_206595 NM_206839 NM_206852 NM_206857 NM_207009 NM_207122 NM_207324 NM_207343 NM_207372 NM_207401 NM_207406 NM_207460 NM_207467 NM_207473 NM_207481 NM_207484 NM_207497 NM_207506 NM_207585 NM_212460 NM_213589 NM_213590 NM_213596 NM_213602 NM_213651 NM_213662 XM_030378 XM_031553 XM_032996 XM_038150 XM_043653 XM_046600 XM_058628 XM_087499 XM_097351 XM_113947 XM_117294 XM_166320 XM_208333 XM_208990 XM_210048 XM_211367 XM_290401 XM_291007 XM_291095 XM_292717 XM_294765 XM_370649 XM_371369 XM_371461 XM_371488 XM_371591 XM_372097 XM_372110 XM_372198 XM_373538 XM_373865 XM_374025 XM_374801 XM_375803 XM_375816 XM_375853 XM_376018 XM_376278 XM_376350 XM_376412 XM_376436 XM_376679 XM_376784 XM_376841 XM_376846 XM_377476 XM_378203 XM_378223 XM_378228 XM_378279 XM_378399 XM_378411 XM_378573 XM_378678 XM_378700 XM_378701 XM_378970 XM_379100 XM_379102 XM_379318 XM_379378 XM_379380 XM_379406 XM_379438 XM_379458 XM_379656 XM_379702 XM_379877 XM_379933 XM_379958 XM_495807 XM_495909 XM_496081 XM_496088 XM_496103 XM_496227 XM_496238 XM_496266 XM_496467 XM_496879 XM_496889 XM_496895 XM_496933 XM_496981 XM_496983 XM_496984 XM_496985 XM_498446 XM_498464 XM_498469 XM_498497 XM_498500 XM_498513 XM_498557 XM_498561 XM_498625 XM_498636 XM_498810 XM_498811 XM_498818 XM_498823 XM_498824 XM_498861 XM_499005 XM_499009 XM_499030 XM_499050 XM_499072 XM_499110 XM_499131 XM_499298 XM_499312 XM_499323 XM_499525 XM_499576 XM_499594	Genes with multiple seed matches: NM_000216 NM_001003674 NM_001003675 NM_001003712 NM_001004299 NM_001007278 NM_001008493 NM_001018097 NM_001025100 NM_001100 NM_001660 NM_002357 NM_003016 NM_003262 NM_003615 NM_003774 NM_004338 NM_004745 NM_004764 NM_005798 NM_006699 NM_014765 NM_014874 NM_015064 NM_017410 NM_017742 NM_018038 NM_018212 NM_019605 NM_020141 NM_020841 NM_021977 NM_024761 NM_031866 NM_032679 NM_033224 NM_052811 NM_148170 NM_172020 NM_178037 NM_178038 NM_178039 NM_178040 NM_181481 NM_181482 NM_181483 NM_182558 NM_207460 NM_207473 NM_213590 XM_038150 XM_117294 XM_375816 XM_375853 XM_379438 XM_496879 XM_496895 XM_499298 XM_499323

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA