VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gaguucugcacgaucacgu"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1381
.
Total Genes with multiple seed matches:
101
.
Genes with at least one seed match:
NM_000048 NM_000072 NM_000139 NM_000149 NM_000151 NM_000163 NM_000192 NM_000210 NM_000211 NM_000219 NM_000245 NM_000246 NM_000313 NM_000337 NM_000373 NM_000430 NM_000441 NM_000451 NM_000457 NM_000486 NM_000489 NM_000574 NM_000618 NM_000629 NM_000655 NM_000663 NM_000676 NM_000693 NM_000698 NM_000714 NM_000739 NM_000743 NM_000745 NM_000747 NM_000817 NM_000823 NM_000849 NM_000861 NM_000877 NM_000878 NM_000904 NM_000910 NM_000935 NM_000961 NM_000991 NM_001001395 NM_001001433 NM_001001434 NM_001001502 NM_001001547 NM_001001677 NM_001001684 NM_001001687 NM_001001698 NM_001001716 NM_001001789 NM_001001871 NM_001001878 NM_001002265 NM_001002266 NM_001003399 NM_001003674 NM_001003675 NM_001003686 NM_001003687 NM_001003794 NM_001004285 NM_001004286 NM_001004301 NM_001004314 NM_001004327 NM_001004330 NM_001004351 NM_001004433 NM_001005217 NM_001005303 NM_001005372 NM_001005373 NM_001005374 NM_001005387 NM_001005404 NM_001005463 NM_001005920 NM_001006618 NM_001006626 NM_001006627 NM_001006628 NM_001006629 NM_001006630 NM_001006631 NM_001006632 NM_001007098 NM_001007269 NM_001007270 NM_001007529 NM_001007553 NM_001008228 NM_001008229 NM_001008239 NM_001008540 NM_001008658 NM_001008693 NM_001008745 NM_001009553 NM_001009584 NM_001009877 NM_001009880 NM_001009883 NM_001009943 NM_001009956 NM_001009960 NM_001010846 NM_001010910 NM_001011537 NM_001011540 NM_001011655 NM_001011666 NM_001012320 NM_001012339 NM_001012446 NM_001012614 NM_001012626 NM_001012651 NM_001012659 NM_001012733 NM_001012734 NM_001013404 NM_001013634 NM_001013649 NM_001013659 NM_001013670 NM_001013675 NM_001013681 NM_001013721 NM_001013725 NM_001014342 NM_001014797 NM_001015877 NM_001017926 NM_001017970 NM_001017992 NM_001017995 NM_001018053 NM_001023562 NM_001023563 NM_001024215 NM_001024660 NM_001024680 NM_001024843 NM_001024844 NM_001024937 NM_001024940 NM_001024941 NM_001024943 NM_001024944 NM_001024946 NM_001025068 NM_001025069 NM_001025076 NM_001025077 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001025108 NM_001025201 NM_001025266 NM_001044 NM_001046 NM_001049 NM_001056 NM_001066 NM_001080 NM_001083 NM_001112 NM_001127 NM_001167 NM_001186 NM_001198 NM_001204 NM_001206 NM_001230 NM_001241 NM_001278 NM_001286 NM_001328 NM_001360 NM_001387 NM_001420 NM_001438 NM_001549 NM_001609 NM_001621 NM_001624 NM_001632 NM_001636 NM_001753 NM_001759 NM_001789 NM_001816 NM_001822 NM_001834 NM_001891 NM_001896 NM_001905 NM_001908 NM_001944 NM_001975 NM_001980 NM_001992 NM_002019 NM_002025 NM_002061 NM_002063 NM_002070 NM_002098 NM_002204 NM_002209 NM_002231 NM_002242 NM_002254 NM_002285 NM_002293 NM_002334 NM_002380 NM_002385 NM_002387 NM_002399 NM_002414 NM_002417 NM_002433 NM_002439 NM_002481 NM_002504 NM_002514 NM_002582 NM_002631 NM_002639 NM_002725 NM_002763 NM_002780 NM_002874 NM_002879 NM_002906 NM_002929 NM_002938 NM_003012 NM_003045 NM_003075 NM_003082 NM_003085 NM_003101 NM_003130 NM_003167 NM_003180 NM_003192 NM_003204 NM_003239 NM_003274 NM_003315 NM_003343 NM_003347 NM_003371 NM_003389 NM_003430 NM_003445 NM_003455 NM_003463 NM_003467 NM_003505 NM_003605 NM_003622 NM_003644 NM_003660 NM_003661 NM_003677 NM_003683 NM_003728 NM_003757 NM_003763 NM_003774 NM_003810 NM_003849 NM_003872 NM_003876 NM_003918 NM_003938 NM_003983 NM_003998 NM_004041 NM_004050 NM_004060 NM_004061 NM_004128 NM_004171 NM_004184 NM_004274 NM_004282 NM_004300 NM_004338 NM_004360 NM_004370 NM_004393 NM_004399 NM_004401 NM_004402 NM_004442 NM_004449 NM_004454 NM_004459 NM_004463 NM_004473 NM_004481 NM_004486 NM_004505 NM_004580 NM_004589 NM_004598 NM_004627 NM_004646 NM_004650 NM_004719 NM_004744 NM_004798 NM_004856 NM_004863 NM_004866 NM_004904 NM_004905 NM_004907 NM_004932 NM_004936 NM_004958 NM_004992 NM_004999 NM_005044 NM_005063 NM_005077 NM_005090 NM_005110 NM_005128 NM_005160 NM_005173 NM_005178 NM_005216 NM_005230 NM_005284 NM_005313 NM_005336 NM_005338 NM_005342 NM_005349 NM_005387 NM_005395 NM_005402 NM_005431 NM_005472 NM_005476 NM_005501 NM_005516 NM_005542 NM_005604 NM_005652 NM_005662 NM_005676 NM_005707 NM_005730 NM_005732 NM_005816 NM_005889 NM_005898 NM_005975 NM_005999 NM_006017 NM_006035 NM_006038 NM_006100 NM_006190 NM_006204 NM_006256 NM_006261 NM_006282 NM_006306 NM_006315 NM_006361 NM_006409 NM_006464 NM_006487 NM_006500 NM_006502 NM_006540 NM_006555 NM_006561 NM_006576 NM_006578 NM_006598 NM_006669 NM_006675 NM_006711 NM_006716 NM_006738 NM_006749 NM_006762 NM_006766 NM_006773 NM_006811 NM_006875 NM_006909 NM_006927 NM_006982 NM_006989 NM_007047 NM_007064 NM_007073 NM_007084 NM_007085 NM_007097 NM_007099 NM_007108 NM_007110 NM_007145 NM_007158 NM_007163 NM_007198 NM_007200 NM_007222 NM_007238 NM_007249 NM_007257 NM_007283 NM_007327 NM_007350 NM_007375 NM_012074 NM_012090 NM_012164 NM_012180 NM_012248 NM_012292 NM_012306 NM_012384 NM_012400 NM_012430 NM_012434 NM_013254 NM_013381 NM_013402 NM_013416 NM_013432 NM_013984 NM_014003 NM_014028 NM_014066 NM_014106 NM_014139 NM_014181 NM_014212 NM_014240 NM_014246 NM_014293 NM_014309 NM_014313 NM_014325 NM_014326 NM_014335 NM_014336 NM_014354 NM_014388 NM_014413 NM_014423 NM_014435 NM_014442 NM_014480 NM_014504 NM_014518 NM_014521 NM_014552 NM_014553 NM_014556 NM_014587 NM_014608 NM_014648 NM_014653 NM_014667 NM_014697 NM_014730 NM_014743 NM_014788 NM_014797 NM_014801 NM_014804 NM_014810 NM_014848 NM_014859 NM_014867 NM_014897 NM_014898 NM_014901 NM_014902 NM_014906 NM_014916 NM_014967 NM_015033 NM_015035 NM_015044 NM_015057 NM_015070 NM_015071 NM_015074 NM_015088 NM_015100 NM_015141 NM_015151 NM_015170 NM_015202 NM_015215 NM_015229 NM_015253 NM_015264 NM_015274 NM_015282 NM_015286 NM_015353 NM_015358 NM_015375 NM_015385 NM_015433 NM_015453 NM_015458 NM_015488 NM_015493 NM_015635 NM_015675 NM_015716 NM_015719 NM_015833 NM_015874 NM_015886 NM_015894 NM_015896 NM_015949 NM_016056 NM_016067 NM_016083 NM_016102 NM_016138 NM_016144 NM_016194 NM_016210 NM_016224 NM_016297 NM_016390 NM_016400 NM_016401 NM_016436 NM_016442 NM_016480 NM_016546 NM_016562 NM_016590 NM_017449 NM_017540 NM_017542 NM_017621 NM_017643 NM_017651 NM_017656 NM_017671 NM_017672 NM_017679 NM_017704 NM_017705 NM_017723 NM_017781 NM_017847 NM_017849 NM_017852 NM_017853 NM_017860 NM_017873 NM_017925 NM_017958 NM_017982 NM_018064 NM_018068 NM_018069 NM_018097 NM_018108 NM_018128 NM_018141 NM_018200 NM_018215 NM_018226 NM_018254 NM_018277 NM_018279 NM_018281 NM_018324 NM_018327 NM_018361 NM_018374 NM_018383 NM_018438 NM_018443 NM_018449 NM_018450 NM_018484 NM_018640 NM_018644 NM_018712 NM_018715 NM_018836 NM_018841 NM_018938 NM_018941 NM_018963 NM_019007 NM_019021 NM_019059 NM_019094 NM_019594 NM_020038 NM_020133 NM_020149 NM_020163 NM_020180 NM_020201 NM_020246 NM_020251 NM_020338 NM_020345 NM_020390 NM_020429 NM_020436 NM_020462 NM_020654 NM_020686 NM_020717 NM_020761 NM_020772 NM_020782 NM_020801 NM_020803 NM_020809 NM_020820 NM_020831 NM_020844 NM_020867 NM_020901 NM_020921 NM_020925 NM_020933 NM_020947 NM_020951 NM_020954 NM_020956 NM_020974 NM_020994 NM_021030 NM_021035 NM_021045 NM_021080 NM_021116 NM_021145 NM_021174 NM_021569 NM_021708 NM_021735 NM_021736 NM_021737 NM_021813 NM_022073 NM_022080 NM_022085 NM_022098 NM_022103 NM_022112 NM_022114 NM_022138 NM_022171 NM_022349 NM_022350 NM_022464 NM_022470 NM_022491 NM_022658 NM_022736 NM_022761 NM_022766 NM_022777 NM_022787 NM_022903 NM_022918 NM_023016 NM_023107 NM_023108 NM_023924 NM_024015 NM_024026 NM_024081 NM_024119 NM_024308 NM_024598 NM_024599 NM_024607 NM_024620 NM_024627 NM_024635 NM_024656 NM_024670 NM_024686 NM_024707 NM_024760 NM_024771 NM_024804 NM_024808 NM_024815 NM_024836 NM_024859 NM_024866 NM_024875 NM_024878 NM_024881 NM_024902 NM_024935 NM_024943 NM_024953 NM_024963 NM_024967 NM_025002 NM_025049 NM_025054 NM_025097 NM_025158 NM_025197 NM_025203 NM_025217 NM_025219 NM_030569 NM_030583 NM_030623 NM_030626 NM_030640 NM_030643 NM_030645 NM_030653 NM_030655 NM_030772 NM_030773 NM_030782 NM_030787 NM_030796 NM_030805 NM_030809 NM_030810 NM_030918 NM_030928 NM_030961 NM_031293 NM_031442 NM_031448 NM_031455 NM_031490 NM_032017 NM_032023 NM_032030 NM_032047 NM_032105 NM_032121 NM_032144 NM_032160 NM_032174 NM_032281 NM_032288 NM_032289 NM_032294 NM_032300 NM_032338 NM_032350 NM_032352 NM_032458 NM_032479 NM_032501 NM_032582 NM_032638 NM_032644 NM_032728 NM_032737 NM_032772 NM_032788 NM_032817 NM_032818 NM_032853 NM_032869 NM_032933 NM_032936 NM_032967 NM_032971 NM_032972 NM_032976 NM_032977 NM_033044 NM_033111 NM_033181 NM_033206 NM_033224 NM_033254 NM_033262 NM_033297 NM_033346 NM_033421 NM_033430 NM_033437 NM_033449 NM_033505 NM_052820 NM_052822 NM_052848 NM_052861 NM_052874 NM_052900 NM_052919 NM_052928 NM_052941 NM_052947 NM_052949 NM_052972 NM_052996 NM_054016 NM_054025 NM_058178 NM_058180 NM_058240 NM_058246 NM_078487 NM_080594 NM_080607 NM_080622 NM_080625 NM_080645 NM_080657 NM_080676 NM_080717 NM_080737 NM_130446 NM_130809 NM_133264 NM_133279 NM_133280 NM_133367 NM_133375 NM_133444 NM_133476 NM_133482 NM_133490 NM_134268 NM_134422 NM_134423 NM_134424 NM_138270 NM_138271 NM_138280 NM_138361 NM_138368 NM_138372 NM_138399 NM_138400 NM_138450 NM_138458 NM_138468 NM_138494 NM_138555 NM_138608 NM_138640 NM_138775 NM_138777 NM_138788 NM_138801 NM_138814 NM_139015 NM_139016 NM_139067 NM_139072 NM_139131 NM_139163 NM_144570 NM_144618 NM_144661 NM_144664 NM_144669 NM_144687 NM_144721 NM_144767 NM_144984 NM_145021 NM_145042 NM_145055 NM_145174 NM_145177 NM_145187 NM_145188 NM_145189 NM_145190 NM_145263 NM_145268 NM_145294 NM_145298 NM_145325 NM_145343 NM_145349 NM_145351 NM_145660 NM_145699 NM_145728 NM_145730 NM_145754 NM_145809 NM_145906 NM_147147 NM_147780 NM_147781 NM_147782 NM_147783 NM_148171 NM_148903 NM_152235 NM_152240 NM_152289 NM_152309 NM_152330 NM_152361 NM_152362 NM_152367 NM_152406 NM_152411 NM_152437 NM_152472 NM_152477 NM_152483 NM_152495 NM_152496 NM_152551 NM_152553 NM_152568 NM_152569 NM_152586 NM_152609 NM_152630 NM_152636 NM_152678 NM_152680 NM_152681 NM_152684 NM_152686 NM_152694 NM_152751 NM_152777 NM_152842 NM_152856 NM_152913 NM_152990 NM_153191 NM_153217 NM_153229 NM_153257 NM_153260 NM_153274 NM_153350 NM_153358 NM_153368 NM_153375 NM_153442 NM_153462 NM_153463 NM_153608 NM_153683 NM_153687 NM_153717 NM_153809 NM_153827 NM_153836 NM_170663 NM_170674 NM_170675 NM_170676 NM_170677 NM_170740 NM_172002 NM_172037 NM_172070 NM_172206 NM_172239 NM_172315 NM_172316 NM_172346 NM_173215 NM_173462 NM_173464 NM_173511 NM_173539 NM_173555 NM_173582 NM_173583 NM_173588 NM_173611 NM_173618 NM_173621 NM_173645 NM_173681 NM_173683 NM_173701 NM_173795 NM_174934 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_175062 NM_175064 NM_175078 NM_175852 NM_175895 NM_176095 NM_176811 NM_176823 NM_176825 NM_177401 NM_177554 NM_177963 NM_177999 NM_178129 NM_178145 NM_178170 NM_178509 NM_178550 NM_178568 NM_178818 NM_178826 NM_178830 NM_178836 NM_178849 NM_178857 NM_181041 NM_181349 NM_181481 NM_181482 NM_181483 NM_181486 NM_181621 NM_181644 NM_181672 NM_181673 NM_181713 NM_181725 NM_181782 NM_182516 NM_182533 NM_182534 NM_182570 NM_182578 NM_182606 NM_182621 NM_182633 NM_182641 NM_182688 NM_182734 NM_182740 NM_182898 NM_182899 NM_182907 NM_182918 NM_182920 NM_182922 NM_182932 NM_182933 NM_182936 NM_182943 NM_182974 NM_183002 NM_183006 NM_183234 NM_183235 NM_183236 NM_183373 NM_183397 NM_194283 NM_194285 NM_194286 NM_194287 NM_194309 NM_194316 NM_194356 NM_197956 NM_198080 NM_198089 NM_198123 NM_198124 NM_198157 NM_198182 NM_198196 NM_198271 NM_198321 NM_198336 NM_198337 NM_198399 NM_198458 NM_198480 NM_198506 NM_198513 NM_198525 NM_198527 NM_198542 NM_198562 NM_198682 NM_198901 NM_198992 NM_199040 NM_199071 NM_199176 NM_199177 NM_199205 NM_199246 NM_199344 NM_199454 NM_199461 NM_199462 NM_199464 NM_201266 NM_201279 NM_201348 NM_201432 NM_201433 NM_201567 NM_201994 NM_203283 NM_203284 NM_203293 NM_203294 NM_203295 NM_203296 NM_203297 NM_203346 NM_203381 NM_203395 NM_203422 NM_203445 NM_203452 NM_203463 NM_205855 NM_206594 NM_206595 NM_206809 NM_206810 NM_206811 NM_206812 NM_206813 NM_206814 NM_206866 NM_206887 NM_206910 NM_206911 NM_206914 NM_207171 NM_207320 NM_207333 NM_207344 NM_207376 NM_207380 NM_207381 NM_207382 NM_207394 NM_207412 NM_207417 NM_207434 NM_207442 NM_207453 NM_207460 NM_207463 NM_207470 NM_207473 NM_207475 NM_207477 NM_207483 NM_207505 NM_207511 NM_207514 NM_207585 NM_213566 NM_213603 NM_213633 NM_213645 NM_213646 XM_027236 XM_031553 XM_036729 XM_039393 XM_039733 XM_042936 XM_044434 XM_047355 XM_047610 XM_048592 XM_059318 XM_084852 XM_113763 XM_172801 XM_209155 XM_209363 XM_209700 XM_290737 XM_291019 XM_291075 XM_291671 XM_292357 XM_293599 XM_298151 XM_370654 XM_370729 XM_370878 XM_371214 XM_371374 XM_371569 XM_371664 XM_371943 XM_372090 XM_372233 XM_372267 XM_372420 XM_373030 XM_373477 XM_373561 XM_373606 XM_373647 XM_373650 XM_373690 XM_373695 XM_373704 XM_373744 XM_373750 XM_373765 XM_374069 XM_374113 XM_374341 XM_374460 XM_374781 XM_374945 XM_374976 XM_375065 XM_375292 XM_375373 XM_375527 XM_375853 XM_376062 XM_376189 XM_376257 XM_376522 XM_376558 XM_376586 XM_376602 XM_376658 XM_376679 XM_376784 XM_378202 XM_378280 XM_378321 XM_378355 XM_378372 XM_378546 XM_378590 XM_378606 XM_378625 XM_378631 XM_378648 XM_378678 XM_378692 XM_378742 XM_378758 XM_378825 XM_378982 XM_378983 XM_378993 XM_379006 XM_379060 XM_379065 XM_379074 XM_379075 XM_379141 XM_379214 XM_379363 XM_379381 XM_379391 XM_379398 XM_379458 XM_379501 XM_379512 XM_379541 XM_379595 XM_379629 XM_379637 XM_379657 XM_379798 XM_379820 XM_379858 XM_379897 XM_379927 XM_379933 XM_380120 XM_380121 XM_380135 XM_495881 XM_495918 XM_495960 XM_495971 XM_496076 XM_496239 XM_496251 XM_496351 XM_496408 XM_496549 XM_496690 XM_496692 XM_496695 XM_496836 XM_496894 XM_496898 XM_496899 XM_496905 XM_496907 XM_496912 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_498429 XM_498479 XM_498484 XM_498500 XM_498506 XM_498510 XM_498575 XM_498578 XM_498614 XM_498632 XM_498656 XM_498660 XM_498677 XM_498681 XM_498739 XM_498831 XM_498852 XM_498923 XM_498932 XM_498933 XM_498991 XM_498998 XM_499022 XM_499023 XM_499092 XM_499101 XM_499123 XM_499130 XM_499164 XM_499314 XM_499321 XM_499328 XM_499330 XM_499333 XM_499338 XM_499343 XM_499348 XM_499354 XM_499356 XM_499495 XM_499522 XM_499558 XR_000182 XR_000192
Genes with multiple seed matches:
NM_000139 NM_000151 NM_000211 NM_000246 NM_000693 NM_000849 NM_001001716 NM_001005404 NM_001012659 NM_001012733 NM_001012734 NM_001080 NM_001198 NM_001624 NM_001636 NM_001908 NM_002061 NM_002481 NM_002879 NM_003167 NM_004060 NM_004454 NM_004459 NM_004481 NM_005044 NM_007084 NM_007145 NM_007163 NM_007257 NM_014326 NM_014552 NM_014797 NM_015033 NM_015074 NM_015151 NM_016056 NM_016083 NM_016546 NM_016562 NM_017873 NM_018438 NM_020133 NM_020462 NM_020954 NM_022085 NM_024607 NM_024902 NM_030655 NM_030810 NM_031455 NM_032105 NM_032121 NM_032582 NM_032788 NM_033181 NM_054016 NM_080657 NM_133367 NM_134422 NM_134423 NM_134424 NM_139015 NM_144570 NM_145268 NM_147780 NM_147781 NM_147782 NM_147783 NM_152330 NM_152411 NM_152472 NM_152496 NM_153683 NM_170740 NM_173582 NM_177999 NM_178509 NM_182641 NM_182907 NM_182920 NM_198182 NM_198542 NM_199246 NM_207463 NM_207483 XM_291671 XM_371664 XM_373030 XM_373695 XM_373765 XM_375373 XM_376679 XM_379214 XM_379595 XM_379933 XM_496351 XM_498500 XM_498660 XM_498932 XM_499164 XR_000182
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)