VIRsiRNAdb

Predicted off-targets seeds for siRNA "cugcaccaugaucaucgac" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :947.
Total Genes with multiple seed matches: 51.
Genes with at least one seed match: NM_000050 NM_000060 NM_000167 NM_000176 NM_000245 NM_000261 NM_000276 NM_000367 NM_000369 NM_000376 NM_000393 NM_000458 NM_000530 NM_000536 NM_000566 NM_000634 NM_000663 NM_000664 NM_000668 NM_000681 NM_000687 NM_000793 NM_000809 NM_000851 NM_000868 NM_000926 NM_000962 NM_000997 NM_001001188 NM_001001330 NM_001001436 NM_001001549 NM_001001550 NM_001001555 NM_001001693 NM_001001699 NM_001001704 NM_001001924 NM_001001925 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001001931 NM_001002233 NM_001002811 NM_001002812 NM_001002814 NM_001002861 NM_001003679 NM_001003712 NM_001003725 NM_001003819 NM_001003827 NM_001004355 NM_001004434 NM_001005366 NM_001006656 NM_001007023 NM_001007271 NM_001007274 NM_001007275 NM_001008211 NM_001008212 NM_001008213 NM_001008235 NM_001008236 NM_001008408 NM_001008410 NM_001008737 NM_001008781 NM_001009883 NM_001009956 NM_001009957 NM_001009960 NM_001010000 NM_001010851 NM_001010867 NM_001010903 NM_001011656 NM_001012614 NM_001012626 NM_001012714 NM_001012733 NM_001012734 NM_001012984 NM_001012987 NM_001012988 NM_001013629 NM_001013635 NM_001013637 NM_001013666 NM_001013675 NM_001013702 NM_001013710 NM_001013722 NM_001015047 NM_001015048 NM_001015049 NM_001017408 NM_001017440 NM_001017535 NM_001017995 NM_001018053 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001020825 NM_001024094 NM_001024226 NM_001024227 NM_001024228 NM_001024457 NM_001024631 NM_001024646 NM_001024843 NM_001024912 NM_001025100 NM_001035 NM_001041 NM_001071 NM_001099 NM_001102 NM_001127 NM_001128 NM_001149 NM_001155 NM_001165 NM_001224 NM_001278 NM_001280 NM_001328 NM_001332 NM_001337 NM_001356 NM_001432 NM_001465 NM_001519 NM_001587 NM_001627 NM_001658 NM_001677 NM_001712 NM_001859 NM_001897 NM_001931 NM_001932 NM_001980 NM_002043 NM_002071 NM_002142 NM_002236 NM_002247 NM_002271 NM_002290 NM_002293 NM_002355 NM_002414 NM_002480 NM_002568 NM_002594 NM_002613 NM_002649 NM_002719 NM_002725 NM_002737 NM_002738 NM_002814 NM_002834 NM_002898 NM_002912 NM_002959 NM_003001 NM_003016 NM_003047 NM_003084 NM_003200 NM_003202 NM_003212 NM_003214 NM_003224 NM_003330 NM_003338 NM_003373 NM_003392 NM_003412 NM_003576 NM_003586 NM_003605 NM_003612 NM_003617 NM_003636 NM_003677 NM_003679 NM_003714 NM_003719 NM_003741 NM_003791 NM_003846 NM_003848 NM_003900 NM_003966 NM_004030 NM_004033 NM_004075 NM_004113 NM_004237 NM_004274 NM_004277 NM_004285 NM_004302 NM_004311 NM_004319 NM_004376 NM_004488 NM_004507 NM_004537 NM_004603 NM_004619 NM_004630 NM_004727 NM_004734 NM_004823 NM_004839 NM_004842 NM_004873 NM_004946 NM_004973 NM_004978 NM_004992 NM_005036 NM_005065 NM_005093 NM_005109 NM_005116 NM_005117 NM_005137 NM_005202 NM_005220 NM_005230 NM_005263 NM_005311 NM_005338 NM_005359 NM_005365 NM_005370 NM_005392 NM_005429 NM_005475 NM_005491 NM_005539 NM_005583 NM_005649 NM_005715 NM_005783 NM_005785 NM_005816 NM_005828 NM_005935 NM_005968 NM_006007 NM_006037 NM_006076 NM_006091 NM_006187 NM_006266 NM_006290 NM_006306 NM_006336 NM_006353 NM_006389 NM_006451 NM_006456 NM_006481 NM_006496 NM_006557 NM_006565 NM_006670 NM_006693 NM_006699 NM_006773 NM_006803 NM_006827 NM_006833 NM_006852 NM_006925 NM_006943 NM_006969 NM_007171 NM_007203 NM_007213 NM_007271 NM_007353 NM_012074 NM_012083 NM_012140 NM_012154 NM_012193 NM_012234 NM_012297 NM_012301 NM_012304 NM_012309 NM_012398 NM_012405 NM_012425 NM_012431 NM_012479 NM_012481 NM_013230 NM_013345 NM_013989 NM_014000 NM_014077 NM_014080 NM_014143 NM_014170 NM_014218 NM_014222 NM_014236 NM_014279 NM_014324 NM_014326 NM_014350 NM_014459 NM_014517 NM_014521 NM_014607 NM_014631 NM_014661 NM_014702 NM_014715 NM_014730 NM_014762 NM_014811 NM_014829 NM_014835 NM_014850 NM_014854 NM_014913 NM_014919 NM_014945 NM_014997 NM_015066 NM_015082 NM_015084 NM_015088 NM_015113 NM_015184 NM_015192 NM_015202 NM_015206 NM_015245 NM_015278 NM_015288 NM_015313 NM_015381 NM_015393 NM_015404 NM_015417 NM_015428 NM_015438 NM_015460 NM_015511 NM_015518 NM_015576 NM_015600 NM_015609 NM_015678 NM_015886 NM_016087 NM_016115 NM_016147 NM_016196 NM_016235 NM_016248 NM_016255 NM_016275 NM_016282 NM_016339 NM_016340 NM_016351 NM_016377 NM_016382 NM_016523 NM_016538 NM_016544 NM_016611 NM_017450 NM_017526 NM_017555 NM_017590 NM_017594 NM_017623 NM_017644 NM_017744 NM_017802 NM_017811 NM_017850 NM_017852 NM_017853 NM_017927 NM_017982 NM_017993 NM_018024 NM_018047 NM_018069 NM_018157 NM_018159 NM_018185 NM_018199 NM_018207 NM_018215 NM_018224 NM_018234 NM_018292 NM_018332 NM_018347 NM_018420 NM_018439 NM_018469 NM_018607 NM_018660 NM_018667 NM_019008 NM_019009 NM_019041 NM_019084 NM_019086 NM_019841 NM_019842 NM_020037 NM_020038 NM_020133 NM_020151 NM_020194 NM_020394 NM_020399 NM_020429 NM_020639 NM_020686 NM_020717 NM_020728 NM_020739 NM_020749 NM_020773 NM_020792 NM_020802 NM_020841 NM_020919 NM_020967 NM_020987 NM_020997 NM_021032 NM_021033 NM_021080 NM_021094 NM_021116 NM_021183 NM_021184 NM_021222 NM_021252 NM_021255 NM_021616 NM_021722 NM_021723 NM_021820 NM_021905 NM_021927 NM_021945 NM_021980 NM_022076 NM_022085 NM_022436 NM_022445 NM_022473 NM_022730 NM_022750 NM_022781 NM_022784 NM_022819 NM_022893 NM_023934 NM_024040 NM_024325 NM_024423 NM_024513 NM_024517 NM_024546 NM_024584 NM_024600 NM_024677 NM_024683 NM_024738 NM_024841 NM_024854 NM_024877 NM_024878 NM_024881 NM_024909 NM_024922 NM_024935 NM_025090 NM_025151 NM_025191 NM_025208 NM_025219 NM_030574 NM_030622 NM_030636 NM_030655 NM_030764 NM_030793 NM_030810 NM_030929 NM_030979 NM_031203 NM_031208 NM_031268 NM_031308 NM_031435 NM_031439 NM_031442 NM_031458 NM_031468 NM_031469 NM_032016 NM_032019 NM_032219 NM_032239 NM_032279 NM_032296 NM_032310 NM_032350 NM_032492 NM_032506 NM_032513 NM_032529 NM_032538 NM_032578 NM_032582 NM_032590 NM_032717 NM_032728 NM_032735 NM_032819 NM_032853 NM_032864 NM_032865 NM_032874 NM_032906 NM_032932 NM_032957 NM_032976 NM_032983 NM_032984 NM_032988 NM_033084 NM_033121 NM_033135 NM_033364 NM_033389 NM_033407 NM_033640 NM_052878 NM_052887 NM_052904 NM_052938 NM_052970 NM_052988 NM_053029 NM_054012 NM_057168 NM_058219 NM_078470 NM_078628 NM_080542 NM_080543 NM_080552 NM_080591 NM_080617 NM_080625 NM_080723 NM_080744 NM_080915 NM_080917 NM_130389 NM_130783 NM_130847 NM_133265 NM_133332 NM_133333 NM_133448 NM_133627 NM_133628 NM_133630 NM_134425 NM_134431 NM_138333 NM_138390 NM_138485 NM_138494 NM_138566 NM_138572 NM_138633 NM_138727 NM_138728 NM_138809 NM_138934 NM_138998 NM_139018 NM_139068 NM_139069 NM_139207 NM_139267 NM_144498 NM_144607 NM_144613 NM_144621 NM_144623 NM_144974 NM_145004 NM_145060 NM_145244 NM_145250 NM_145257 NM_145349 NM_145351 NM_145646 NM_145685 NM_145693 NM_145730 NM_145734 NM_145759 NM_145818 NM_145863 NM_145896 NM_145914 NM_148676 NM_152235 NM_152253 NM_152264 NM_152334 NM_152354 NM_152382 NM_152407 NM_152465 NM_152498 NM_152531 NM_152536 NM_152570 NM_152583 NM_152611 NM_152615 NM_152630 NM_152690 NM_152717 NM_152724 NM_152787 NM_152831 NM_153020 NM_153022 NM_153038 NM_153191 NM_153379 NM_153442 NM_153619 NM_153810 NM_153836 NM_156036 NM_170705 NM_170750 NM_171982 NM_172024 NM_172069 NM_172130 NM_172172 NM_172390 NM_173060 NM_173172 NM_173466 NM_173481 NM_173519 NM_173551 NM_173654 NM_173823 NM_173829 NM_174911 NM_175063 NM_175078 NM_175736 NM_175864 NM_175878 NM_175883 NM_175900 NM_175902 NM_175913 NM_176871 NM_177427 NM_177551 NM_177978 NM_177979 NM_178439 NM_178448 NM_178516 NM_178526 NM_178556 NM_178569 NM_178580 NM_178586 NM_178835 NM_181268 NM_181270 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181290 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301 NM_181349 NM_181457 NM_181458 NM_181459 NM_181460 NM_181784 NM_181785 NM_181900 NM_182499 NM_182516 NM_182518 NM_182520 NM_182533 NM_182578 NM_182612 NM_182631 NM_182729 NM_182734 NM_182742 NM_182743 NM_182789 NM_182831 NM_182915 NM_182962 NM_182978 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232 NM_183323 NM_194293 NM_194328 NM_194329 NM_194330 NM_194331 NM_194332 NM_194356 NM_194358 NM_194359 NM_198074 NM_198080 NM_198196 NM_198312 NM_198327 NM_198328 NM_198444 NM_198513 NM_198527 NM_198542 NM_198686 NM_198715 NM_198835 NM_198900 NM_199045 NM_199052 NM_199054 NM_199078 NM_199206 NM_199262 NM_199330 NM_199331 NM_199332 NM_199335 NM_199341 NM_199346 NM_199451 NM_199452 NM_201260 NM_201261 NM_201348 NM_201397 NM_201565 NM_201632 NM_201634 NM_203327 NM_203382 NM_203391 NM_203488 NM_203504 NM_203505 NM_205836 NM_206538 NM_206813 NM_206814 NM_206817 NM_206818 NM_206832 NM_206834 NM_206887 NM_206910 NM_207015 NM_207286 NM_207287 NM_207288 NM_207367 NM_207368 NM_207385 NM_207404 NM_207410 NM_207434 NM_207504 NM_207585 NM_207644 NM_212464 NM_212467 NM_213648 XM_016532 XM_047995 XM_048898 XM_050278 XM_051200 XM_058513 XM_084529 XM_087386 XM_087499 XM_114166 XM_116980 XM_117294 XM_208320 XM_211367 XM_290502 XM_292012 XM_294775 XM_294993 XM_298151 XM_370603 XM_370849 XM_370878 XM_370932 XM_371053 XM_371254 XM_371664 XM_371769 XM_371820 XM_372121 XM_372193 XM_372267 XM_372556 XM_373547 XM_373616 XM_373775 XM_373811 XM_374078 XM_374096 XM_374341 XM_375527 XM_375935 XM_376049 XM_376207 XM_376284 XM_376560 XM_377041 XM_378398 XM_378430 XM_378494 XM_378511 XM_378544 XM_378573 XM_378620 XM_378700 XM_378708 XM_378798 XM_378810 XM_378914 XM_378971 XM_379094 XM_379102 XM_379121 XM_379154 XM_379267 XM_379276 XM_379406 XM_379452 XM_379535 XM_379634 XM_380160 XM_495882 XM_496036 XM_496134 XM_496143 XM_496351 XM_496579 XM_496661 XM_496740 XM_496849 XM_496976 XM_497092 XM_498437 XM_498459 XM_498464 XM_498481 XM_498537 XM_498555 XM_498569 XM_498572 XM_498611 XM_498738 XM_498740 XM_498872 XM_498877 XM_498901 XM_498961 XM_499085 XM_499123 XM_499164 XM_499257 XM_499589 XM_499594 XR_000184 XR_000195 XR_000227 XR_000254 XR_000261 XR_000275 XR_000292 XR_000294	Genes with multiple seed matches: NM_000664 NM_001001704 NM_001002811 NM_001002812 NM_001009956 NM_001009960 NM_001932 NM_002725 NM_003605 NM_003679 NM_003966 NM_005370 NM_005968 NM_006803 NM_012425 NM_013230 NM_014661 NM_014854 NM_015066 NM_016255 NM_016611 NM_018069 NM_018215 NM_020151 NM_021927 NM_024513 NM_024935 NM_031203 NM_032728 NM_133448 NM_138494 NM_138998 NM_139267 NM_145818 NM_152253 NM_152724 NM_171982 NM_174911 NM_177427 NM_198835 NM_199045 NM_201348 NM_201397 NM_212467 XM_379267 XM_379535 XM_380160 XM_497092 XM_498961 XR_000184 XR_000294

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA