VIRsiRNAdb

Predicted off-targets seeds for siRNA "uuggaauugauugcgaaag" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :961.
Total Genes with multiple seed matches: 38.
Genes with at least one seed match: NM_000051 NM_000092 NM_000163 NM_000195 NM_000278 NM_000297 NM_000310 NM_000332 NM_000335 NM_000346 NM_000376 NM_000411 NM_000415 NM_000458 NM_000500 NM_000516 NM_000554 NM_000565 NM_000599 NM_000641 NM_000657 NM_000694 NM_000702 NM_000721 NM_000747 NM_000806 NM_000807 NM_000810 NM_000924 NM_000955 NM_000961 NM_000997 NM_001001395 NM_001001484 NM_001001666 NM_001001675 NM_001001699 NM_001001716 NM_001001789 NM_001001870 NM_001001928 NM_001001929 NM_001001930 NM_001001936 NM_001002233 NM_001002814 NM_001002860 NM_001003941 NM_001004196 NM_001004197 NM_001004299 NM_001004336 NM_001004349 NM_001005242 NM_001005303 NM_001005373 NM_001005374 NM_001005404 NM_001005915 NM_001006113 NM_001006116 NM_001006615 NM_001006932 NM_001007169 NM_001007225 NM_001007553 NM_001008701 NM_001008781 NM_001009880 NM_001010846 NM_001010911 NM_001010980 NM_001011666 NM_001012264 NM_001012361 NM_001012410 NM_001012412 NM_001012418 NM_001012424 NM_001012502 NM_001012651 NM_001012714 NM_001013031 NM_001013258 NM_001013619 NM_001013629 NM_001013678 NM_001013682 NM_001013699 NM_001013713 NM_001013724 NM_001015886 NM_001017395 NM_001017415 NM_001017416 NM_001017535 NM_001017967 NM_001018058 NM_001018089 NM_001018116 NM_001023565 NM_001024666 NM_001024808 NM_001024843 NM_001025194 NM_001025195 NM_001038 NM_001049 NM_001128 NM_001172 NM_001189 NM_001198 NM_001242 NM_001259 NM_001266 NM_001287 NM_001389 NM_001414 NM_001418 NM_001419 NM_001495 NM_001497 NM_001535 NM_001563 NM_001619 NM_001638 NM_001719 NM_001759 NM_001778 NM_001880 NM_001953 NM_002024 NM_002033 NM_002056 NM_002062 NM_002092 NM_002166 NM_002198 NM_002209 NM_002241 NM_002245 NM_002300 NM_002356 NM_002376 NM_002389 NM_002460 NM_002469 NM_002475 NM_002481 NM_002562 NM_002578 NM_002595 NM_002653 NM_002737 NM_002753 NM_002874 NM_002878 NM_002901 NM_002918 NM_003035 NM_003038 NM_003048 NM_003088 NM_003096 NM_003108 NM_003161 NM_003190 NM_003200 NM_003262 NM_003286 NM_003290 NM_003317 NM_003353 NM_003368 NM_003405 NM_003455 NM_003483 NM_003489 NM_003654 NM_003679 NM_003681 NM_003713 NM_003719 NM_003764 NM_003792 NM_003831 NM_003855 NM_003873 NM_003898 NM_003940 NM_003950 NM_003979 NM_003987 NM_003988 NM_003989 NM_003990 NM_004085 NM_004142 NM_004268 NM_004283 NM_004302 NM_004319 NM_004349 NM_004367 NM_004370 NM_004416 NM_004447 NM_004481 NM_004490 NM_004535 NM_004558 NM_004572 NM_004619 NM_004729 NM_004733 NM_004735 NM_004737 NM_004759 NM_004771 NM_004778 NM_004824 NM_004830 NM_004845 NM_004863 NM_004887 NM_004904 NM_004907 NM_004915 NM_004932 NM_004936 NM_004948 NM_004992 NM_005007 NM_005010 NM_005036 NM_005044 NM_005112 NM_005160 NM_005242 NM_005324 NM_005346 NM_005362 NM_005363 NM_005392 NM_005436 NM_005461 NM_005468 NM_005509 NM_005522 NM_005544 NM_005548 NM_005589 NM_005599 NM_005634 NM_005721 NM_005748 NM_005779 NM_005924 NM_005935 NM_005944 NM_005971 NM_005990 NM_005994 NM_005999 NM_006003 NM_006022 NM_006079 NM_006122 NM_006134 NM_006202 NM_006237 NM_006256 NM_006265 NM_006320 NM_006361 NM_006390 NM_006401 NM_006413 NM_006541 NM_006546 NM_006548 NM_006556 NM_006635 NM_006643 NM_006646 NM_006706 NM_006748 NM_006805 NM_006807 NM_006855 NM_006916 NM_006989 NM_006991 NM_007006 NM_007084 NM_007101 NM_007111 NM_007130 NM_007136 NM_007148 NM_007158 NM_007163 NM_007175 NM_007210 NM_007306 NM_007332 NM_007344 NM_012105 NM_012172 NM_012174 NM_012188 NM_012232 NM_012252 NM_012253 NM_012288 NM_012307 NM_012308 NM_013257 NM_013332 NM_013347 NM_013354 NM_013449 NM_014039 NM_014061 NM_014117 NM_014143 NM_014168 NM_014213 NM_014444 NM_014517 NM_014573 NM_014584 NM_014636 NM_014637 NM_014706 NM_014711 NM_014726 NM_014732 NM_014747 NM_014765 NM_014850 NM_014860 NM_014899 NM_014903 NM_014919 NM_014921 NM_014924 NM_014963 NM_014991 NM_015008 NM_015017 NM_015035 NM_015039 NM_015069 NM_015088 NM_015093 NM_015264 NM_015271 NM_015282 NM_015293 NM_015299 NM_015326 NM_015391 NM_015443 NM_015453 NM_015456 NM_015458 NM_015537 NM_015569 NM_015575 NM_015686 NM_015720 NM_015721 NM_015894 NM_016018 NM_016072 NM_016114 NM_016255 NM_016256 NM_016277 NM_016354 NM_016422 NM_016433 NM_016442 NM_016529 NM_016546 NM_016588 NM_016592 NM_016598 NM_016818 NM_016936 NM_017491 NM_017519 NM_017523 NM_017548 NM_017586 NM_017638 NM_017719 NM_017732 NM_017761 NM_017806 NM_017826 NM_017847 NM_017872 NM_017911 NM_017919 NM_017974 NM_017979 NM_017984 NM_017991 NM_018046 NM_018069 NM_018097 NM_018151 NM_018164 NM_018215 NM_018327 NM_018330 NM_018334 NM_018340 NM_018427 NM_018440 NM_018639 NM_018640 NM_018656 NM_018683 NM_018717 NM_018836 NM_018837 NM_018944 NM_018947 NM_018962 NM_018997 NM_019021 NM_019089 NM_019885 NM_020119 NM_020121 NM_020125 NM_020208 NM_020309 NM_020338 NM_020448 NM_020474 NM_020657 NM_020676 NM_020704 NM_020708 NM_020732 NM_020742 NM_020784 NM_020825 NM_020830 NM_020836 NM_020851 NM_020975 NM_020993 NM_021021 NM_021035 NM_021083 NM_021116 NM_021135 NM_021190 NM_021258 NM_021269 NM_021572 NM_021615 NM_021619 NM_021798 NM_021813 NM_021830 NM_021910 NM_021915 NM_021967 NM_021977 NM_022114 NM_022153 NM_022158 NM_022336 NM_022373 NM_022405 NM_022444 NM_022469 NM_022492 NM_022552 NM_022754 NM_022755 NM_022761 NM_022915 NM_022917 NM_022978 NM_024007 NM_024015 NM_024022 NM_024026 NM_024068 NM_024109 NM_024310 NM_024335 NM_024421 NM_024496 NM_024509 NM_024512 NM_024517 NM_024551 NM_024611 NM_024627 NM_024667 NM_024683 NM_024701 NM_024750 NM_024763 NM_024866 NM_024886 NM_024915 NM_025010 NM_025047 NM_025054 NM_025074 NM_025104 NM_025147 NM_025151 NM_025197 NM_025228 NM_030579 NM_030639 NM_030661 NM_030664 NM_030762 NM_030765 NM_030780 NM_030781 NM_030787 NM_030803 NM_030806 NM_030809 NM_030895 NM_031409 NM_031452 NM_031484 NM_031490 NM_031892 NM_031901 NM_032023 NM_032045 NM_032105 NM_032219 NM_032333 NM_032374 NM_032401 NM_032404 NM_032409 NM_032499 NM_032550 NM_032564 NM_032584 NM_032710 NM_032737 NM_032801 NM_032827 NM_032845 NM_032873 NM_032895 NM_032960 NM_033064 NM_033071 NM_033107 NM_033128 NM_033288 NM_033468 NM_033505 NM_033506 NM_052865 NM_052910 NM_052916 NM_052918 NM_052941 NM_052966 NM_052996 NM_053279 NM_058172 NM_078487 NM_080425 NM_080426 NM_080429 NM_080645 NM_080829 NM_130847 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133448 NM_133627 NM_133628 NM_133629 NM_133630 NM_133642 NM_133650 NM_138292 NM_138334 NM_138361 NM_138362 NM_138368 NM_138444 NM_138446 NM_138484 NM_138811 NM_138980 NM_138981 NM_138982 NM_138991 NM_138992 NM_139016 NM_139159 NM_139235 NM_144616 NM_144677 NM_144716 NM_144769 NM_144967 NM_144970 NM_145011 NM_145012 NM_145030 NM_145053 NM_145064 NM_145174 NM_145212 NM_145213 NM_145235 NM_145241 NM_145275 NM_145342 NM_145693 NM_145759 NM_145808 NM_145906 NM_152287 NM_152317 NM_152330 NM_152363 NM_152414 NM_152439 NM_152529 NM_152636 NM_152653 NM_152734 NM_152780 NM_152832 NM_153010 NM_153020 NM_153035 NM_153209 NM_153238 NM_153259 NM_153274 NM_153338 NM_153348 NM_153380 NM_153456 NM_153462 NM_153463 NM_153620 NM_153631 NM_153632 NM_153759 NM_153809 NM_153826 NM_156036 NM_170706 NM_170709 NM_170710 NM_170716 NM_170717 NM_170751 NM_170752 NM_172239 NM_172346 NM_172350 NM_172351 NM_172352 NM_172353 NM_172354 NM_172355 NM_172356 NM_172357 NM_172358 NM_172359 NM_172360 NM_172361 NM_172367 NM_173354 NM_173473 NM_173490 NM_173494 NM_173637 NM_173647 NM_173676 NM_173699 NM_173794 NM_173811 NM_174911 NM_174919 NM_174937 NM_175629 NM_175634 NM_175635 NM_175636 NM_175863 NM_175868 NM_175884 NM_175907 NM_176095 NM_176096 NM_176816 NM_177414 NM_177427 NM_177938 NM_177939 NM_177963 NM_177964 NM_178011 NM_178122 NM_178145 NM_178173 NM_178191 NM_178232 NM_178313 NM_178494 NM_178500 NM_178505 NM_178585 NM_178815 NM_178867 NM_180989 NM_181078 NM_181079 NM_181265 NM_181332 NM_181359 NM_181670 NM_182501 NM_182502 NM_182565 NM_182596 NM_182607 NM_182637 NM_182638 NM_182898 NM_182899 NM_182907 NM_182961 NM_183227 NM_183422 NM_194278 NM_194290 NM_194295 NM_198056 NM_198083 NM_198253 NM_198254 NM_198281 NM_198285 NM_198441 NM_198462 NM_198466 NM_198485 NM_198562 NM_198596 NM_198686 NM_198887 NM_198890 NM_198893 NM_198904 NM_198955 NM_199075 NM_199139 NM_199163 NM_199168 NM_199229 NM_199454 NM_201624 NM_203375 NM_206887 NM_206962 NM_207174 NM_207358 NM_207362 NM_207387 NM_207391 NM_207423 NM_207438 NM_207453 NM_207458 NM_207460 NM_207470 NM_207478 NM_207485 NM_207495 NM_207504 NM_207577 NM_207582 NM_207627 NM_207628 NM_207629 NM_207630 NM_212464 NM_212467 NM_213566 NM_213649 NM_213650 XM_031689 XM_044178 XM_044921 XM_059318 XM_117294 XM_172874 XM_208835 XM_209234 XM_211367 XM_212061 XM_290351 XM_290502 XM_290737 XM_290925 XM_294450 XM_371074 XM_371097 XM_371176 XM_371286 XM_371717 XM_371820 XM_371848 XM_372097 XM_372268 XM_372556 XM_373491 XM_373704 XM_374022 XM_374045 XM_374086 XM_374145 XM_374163 XM_374781 XM_374803 XM_375174 XM_375183 XM_375272 XM_375606 XM_376278 XM_376303 XM_376558 XM_376560 XM_376602 XM_376652 XM_376679 XM_376720 XM_376784 XM_376905 XM_378273 XM_378329 XM_378372 XM_378491 XM_378511 XM_378546 XM_378549 XM_378617 XM_378639 XM_378655 XM_378678 XM_378712 XM_378756 XM_378843 XM_378914 XM_378917 XM_379041 XM_379075 XM_379100 XM_379154 XM_379173 XM_379386 XM_379402 XM_379452 XM_379454 XM_379458 XM_379477 XM_379543 XM_379702 XM_379820 XM_379892 XM_379933 XM_379967 XM_380092 XM_495888 XM_496036 XM_496037 XM_496041 XM_496044 XM_496367 XM_496408 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_498421 XM_498465 XM_498467 XM_498507 XM_498525 XM_498532 XM_498559 XM_498563 XM_498666 XM_498681 XM_498684 XM_498757 XM_498758 XM_498766 XM_498767 XM_498768 XM_498769 XM_498770 XM_498771 XM_498772 XM_498773 XM_498774 XM_498777 XM_498778 XM_498779 XM_498780 XM_498781 XM_498782 XM_498783 XM_498784 XM_498785 XM_498786 XM_498789 XM_498802 XM_498804 XM_498814 XM_498857 XM_498907 XM_498929 XM_498932 XM_498945 XM_498957 XM_498984 XM_499007 XM_499064 XM_499093 XM_499147 XM_499170 XM_499309 XM_499392 XM_499513 XM_499577 XM_499595 XM_499597	Genes with multiple seed matches: NM_000332 NM_000376 NM_000961 NM_000997 NM_001006113 NM_001017395 NM_001017535 NM_001023565 NM_002469 NM_002481 NM_004992 NM_014732 NM_015008 NM_016433 NM_016936 NM_018717 NM_021977 NM_022114 NM_022469 NM_025197 NM_030661 NM_030806 NM_032105 NM_032801 NM_052996 NM_130847 NM_153631 NM_153632 NM_173354 NM_176095 NM_198562 NM_199454 XM_376558 XM_378549 XM_378639 XM_495888 XM_499093 XM_499147

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA