VIRsiRNAdb

Predicted off-targets seeds for siRNA "uugccuucgaccuuuacgu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1169.
Total Genes with multiple seed matches: 47.
Genes with at least one seed match: NM_000059 NM_000071 NM_000104 NM_000108 NM_000109 NM_000115 NM_000130 NM_000140 NM_000161 NM_000185 NM_000192 NM_000216 NM_000252 NM_000282 NM_000297 NM_000304 NM_000326 NM_000410 NM_000452 NM_000484 NM_000493 NM_000550 NM_000555 NM_000565 NM_000616 NM_000633 NM_000697 NM_000785 NM_000788 NM_000793 NM_000809 NM_000842 NM_000877 NM_000916 NM_000929 NM_000953 NM_000963 NM_000983 NM_001001323 NM_001001330 NM_001001524 NM_001001681 NM_001001709 NM_001001873 NM_001001928 NM_001001929 NM_001001930 NM_001002034 NM_001002838 NM_001002860 NM_001002926 NM_001003674 NM_001003675 NM_001003688 NM_001003712 NM_001003725 NM_001004196 NM_001004197 NM_001004305 NM_001004313 NM_001005210 NM_001005527 NM_001007023 NM_001007546 NM_001008239 NM_001008495 NM_001008564 NM_001008657 NM_001008707 NM_001008744 NM_001009555 NM_001009894 NM_001009991 NM_001010844 NM_001010853 NM_001010867 NM_001010915 NM_001011552 NM_001012419 NM_001012515 NM_001013633 NM_001013656 NM_001013725 NM_001014279 NM_001014765 NM_001017915 NM_001017929 NM_001017965 NM_001017972 NM_001017980 NM_001018065 NM_001018066 NM_001018071 NM_001023567 NM_001024657 NM_001024843 NM_001024845 NM_001025076 NM_001025077 NM_001025100 NM_001025107 NM_001025234 NM_001025235 NM_001025236 NM_001025237 NM_001025238 NM_001025239 NM_001086 NM_001099 NM_001111 NM_001112 NM_001125 NM_001128 NM_001140 NM_001179 NM_001184 NM_001186 NM_001202 NM_001204 NM_001230 NM_001277 NM_001280 NM_001286 NM_001288 NM_001304 NM_001316 NM_001319 NM_001347 NM_001387 NM_001389 NM_001396 NM_001427 NM_001431 NM_001517 NM_001536 NM_001546 NM_001614 NM_001627 NM_001634 NM_001650 NM_001668 NM_001682 NM_001693 NM_001709 NM_001723 NM_001766 NM_001816 NM_001858 NM_001941 NM_001946 NM_002025 NM_002033 NM_002061 NM_002073 NM_002111 NM_002163 NM_002189 NM_002196 NM_002229 NM_002264 NM_002271 NM_002382 NM_002445 NM_002449 NM_002454 NM_002469 NM_002526 NM_002528 NM_002588 NM_002610 NM_002612 NM_002640 NM_002643 NM_002655 NM_002699 NM_002709 NM_002737 NM_002740 NM_002772 NM_002780 NM_002857 NM_002867 NM_002879 NM_002956 NM_003010 NM_003023 NM_003030 NM_003107 NM_003112 NM_003140 NM_003143 NM_003144 NM_003147 NM_003155 NM_003161 NM_003177 NM_003183 NM_003203 NM_003246 NM_003262 NM_003266 NM_003271 NM_003274 NM_003319 NM_003343 NM_003406 NM_003415 NM_003417 NM_003440 NM_003454 NM_003458 NM_003463 NM_003473 NM_003496 NM_003569 NM_003574 NM_003576 NM_003586 NM_003590 NM_003601 NM_003626 NM_003629 NM_003657 NM_003716 NM_003735 NM_003736 NM_003749 NM_003774 NM_003808 NM_003839 NM_003873 NM_003885 NM_003898 NM_003899 NM_003918 NM_003950 NM_003979 NM_004006 NM_004007 NM_004009 NM_004010 NM_004011 NM_004012 NM_004013 NM_004014 NM_004015 NM_004016 NM_004017 NM_004018 NM_004020 NM_004021 NM_004022 NM_004023 NM_004028 NM_004079 NM_004090 NM_004106 NM_004145 NM_004215 NM_004233 NM_004261 NM_004272 NM_004293 NM_004326 NM_004331 NM_004338 NM_004342 NM_004358 NM_004379 NM_004393 NM_004397 NM_004407 NM_004414 NM_004434 NM_004441 NM_004473 NM_004481 NM_004488 NM_004505 NM_004552 NM_004578 NM_004580 NM_004593 NM_004598 NM_004602 NM_004612 NM_004616 NM_004624 NM_004666 NM_004684 NM_004697 NM_004745 NM_004759 NM_004781 NM_004796 NM_004842 NM_004845 NM_004850 NM_004869 NM_004895 NM_005036 NM_005044 NM_005046 NM_005065 NM_005104 NM_005133 NM_005157 NM_005191 NM_005197 NM_005210 NM_005214 NM_005240 NM_005281 NM_005400 NM_005433 NM_005465 NM_005472 NM_005502 NM_005514 NM_005522 NM_005534 NM_005541 NM_005559 NM_005565 NM_005596 NM_005599 NM_005602 NM_005604 NM_005682 NM_005730 NM_005751 NM_005766 NM_005828 NM_005840 NM_005871 NM_005889 NM_005900 NM_005944 NM_005994 NM_006021 NM_006045 NM_006079 NM_006086 NM_006094 NM_006121 NM_006195 NM_006266 NM_006275 NM_006281 NM_006286 NM_006312 NM_006315 NM_006353 NM_006379 NM_006380 NM_006426 NM_006449 NM_006499 NM_006504 NM_006538 NM_006544 NM_006546 NM_006561 NM_006587 NM_006635 NM_006660 NM_006697 NM_006746 NM_006805 NM_006884 NM_006888 NM_006916 NM_006922 NM_006934 NM_006948 NM_006974 NM_006984 NM_007050 NM_007067 NM_007087 NM_007159 NM_007177 NM_007212 NM_007217 NM_007218 NM_007235 NM_007313 NM_007351 NM_012064 NM_012089 NM_012102 NM_012120 NM_012193 NM_012206 NM_012238 NM_012322 NM_012339 NM_012399 NM_013230 NM_013245 NM_013252 NM_013262 NM_013279 NM_013316 NM_013348 NM_013354 NM_013386 NM_013390 NM_013446 NM_013943 NM_013989 NM_014007 NM_014012 NM_014023 NM_014089 NM_014138 NM_014157 NM_014213 NM_014246 NM_014251 NM_014252 NM_014336 NM_014392 NM_014445 NM_014678 NM_014739 NM_014743 NM_014744 NM_014755 NM_014788 NM_014795 NM_014812 NM_014820 NM_014873 NM_014887 NM_014904 NM_014906 NM_014910 NM_014919 NM_014920 NM_014930 NM_014931 NM_014937 NM_014951 NM_014969 NM_014985 NM_014994 NM_015000 NM_015003 NM_015005 NM_015011 NM_015032 NM_015055 NM_015056 NM_015070 NM_015074 NM_015088 NM_015113 NM_015124 NM_015130 NM_015144 NM_015151 NM_015200 NM_015208 NM_015253 NM_015257 NM_015267 NM_015289 NM_015317 NM_015336 NM_015346 NM_015385 NM_015447 NM_015458 NM_015464 NM_015508 NM_015511 NM_015550 NM_015569 NM_015833 NM_015840 NM_015841 NM_015938 NM_015947 NM_015954 NM_016002 NM_016018 NM_016021 NM_016026 NM_016046 NM_016060 NM_016096 NM_016114 NM_016125 NM_016142 NM_016156 NM_016195 NM_016206 NM_016210 NM_016376 NM_016377 NM_016390 NM_016424 NM_016488 NM_016510 NM_016513 NM_016523 NM_016530 NM_016534 NM_016544 NM_016575 NM_016590 NM_016734 NM_017450 NM_017452 NM_017453 NM_017454 NM_017493 NM_017551 NM_017613 NM_017634 NM_017644 NM_017705 NM_017715 NM_017736 NM_017738 NM_017740 NM_017750 NM_017772 NM_017823 NM_017827 NM_017866 NM_017943 NM_017999 NM_018018 NM_018032 NM_018047 NM_018069 NM_018108 NM_018112 NM_018120 NM_018129 NM_018133 NM_018195 NM_018211 NM_018214 NM_018221 NM_018246 NM_018254 NM_018275 NM_018292 NM_018319 NM_018324 NM_018375 NM_018383 NM_018385 NM_018388 NM_018401 NM_018416 NM_018427 NM_018437 NM_018476 NM_018659 NM_018660 NM_018686 NM_018718 NM_018728 NM_018836 NM_018912 NM_018913 NM_018914 NM_018915 NM_018916 NM_018917 NM_018918 NM_018919 NM_018920 NM_018921 NM_018922 NM_018923 NM_018924 NM_018925 NM_018926 NM_018927 NM_018928 NM_018929 NM_018941 NM_018959 NM_018992 NM_018999 NM_019063 NM_019072 NM_019091 NM_019845 NM_019887 NM_020126 NM_020150 NM_020163 NM_020182 NM_020195 NM_020200 NM_020207 NM_020225 NM_020319 NM_020367 NM_020381 NM_020398 NM_020424 NM_020429 NM_020440 NM_020462 NM_020654 NM_020673 NM_020710 NM_020727 NM_020766 NM_020782 NM_020786 NM_020803 NM_020810 NM_020839 NM_020841 NM_020844 NM_020860 NM_020922 NM_020935 NM_020954 NM_021038 NM_021180 NM_021183 NM_021213 NM_021215 NM_021615 NM_021724 NM_021728 NM_021735 NM_021736 NM_021737 NM_021815 NM_021832 NM_021872 NM_021873 NM_021874 NM_021945 NM_021961 NM_021977 NM_022101 NM_022102 NM_022107 NM_022123 NM_022128 NM_022166 NM_022354 NM_022469 NM_022474 NM_022491 NM_022652 NM_022658 NM_022761 NM_022766 NM_022771 NM_022791 NM_022817 NM_022893 NM_022894 NM_022912 NM_023074 NM_023077 NM_024010 NM_024109 NM_024321 NM_024423 NM_024525 NM_024617 NM_024653 NM_024665 NM_024672 NM_024678 NM_024701 NM_024725 NM_024759 NM_024828 NM_024877 NM_024891 NM_024989 NM_025057 NM_025090 NM_025235 NM_025237 NM_030569 NM_030594 NM_030626 NM_030805 NM_030817 NM_030916 NM_031296 NM_031476 NM_031903 NM_031911 NM_031935 NM_032088 NM_032092 NM_032102 NM_032109 NM_032121 NM_032153 NM_032256 NM_032317 NM_032375 NM_032403 NM_032410 NM_032432 NM_032446 NM_032499 NM_032505 NM_032511 NM_032557 NM_032569 NM_032632 NM_032727 NM_032783 NM_032817 NM_032819 NM_032822 NM_032828 NM_032855 NM_032859 NM_032960 NM_032976 NM_032977 NM_033069 NM_033138 NM_033139 NM_033140 NM_033157 NM_033182 NM_033221 NM_033238 NM_033252 NM_033271 NM_033285 NM_033346 NM_033428 NM_033429 NM_033515 NM_052831 NM_052847 NM_052862 NM_052934 NM_053056 NM_053283 NM_057175 NM_058169 NM_058192 NM_078625 NM_080650 NM_080717 NM_101395 NM_130435 NM_130436 NM_130437 NM_130438 NM_130850 NM_130851 NM_133170 NM_133263 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_133378 NM_133432 NM_133437 NM_133463 NM_133476 NM_133480 NM_133481 NM_134422 NM_134423 NM_134424 NM_134442 NM_138333 NM_138337 NM_138347 NM_138368 NM_138402 NM_138415 NM_138419 NM_138434 NM_138450 NM_138554 NM_138556 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138633 NM_138724 NM_138782 NM_138929 NM_138930 NM_138970 NM_139002 NM_139277 NM_139321 NM_144600 NM_144667 NM_144712 NM_144718 NM_144973 NM_144997 NM_145012 NM_145035 NM_145055 NM_145112 NM_145113 NM_145204 NM_145244 NM_145305 NM_145308 NM_145316 NM_145320 NM_145321 NM_145322 NM_145323 NM_145324 NM_145690 NM_145794 NM_145795 NM_145859 NM_145860 NM_147156 NM_147171 NM_147185 NM_148968 NM_148969 NM_148971 NM_148972 NM_148973 NM_148974 NM_152317 NM_152437 NM_152450 NM_152470 NM_152498 NM_152531 NM_152536 NM_152619 NM_152622 NM_152624 NM_152666 NM_152774 NM_152943 NM_152990 NM_153036 NM_153229 NM_153261 NM_153321 NM_153322 NM_153620 NM_170589 NM_170711 NM_170720 NM_170731 NM_170732 NM_170733 NM_170734 NM_170735 NM_172000 NM_172087 NM_172088 NM_172089 NM_172193 NM_172200 NM_172214 NM_172215 NM_172337 NM_173074 NM_173082 NM_173473 NM_173505 NM_173512 NM_173529 NM_173536 NM_173572 NM_173582 NM_173651 NM_173795 NM_173797 NM_174936 NM_175698 NM_175735 NM_175852 NM_175884 NM_177436 NM_178135 NM_178151 NM_178152 NM_178153 NM_178171 NM_178426 NM_178427 NM_178470 NM_178514 NM_178549 NM_181076 NM_181077 NM_181291 NM_181349 NM_181359 NM_181481 NM_181482 NM_181483 NM_181486 NM_181502 NM_181644 NM_181698 NM_181722 NM_181723 NM_181781 NM_181786 NM_181836 NM_182518 NM_182522 NM_182530 NM_182643 NM_182688 NM_182691 NM_182692 NM_182740 NM_182760 NM_182765 NM_182848 NM_182976 NM_183234 NM_183235 NM_183236 NM_183372 NM_183393 NM_183394 NM_183395 NM_183412 NM_183413 NM_194292 NM_194294 NM_194313 NM_194434 NM_194439 NM_197978 NM_198087 NM_198088 NM_198120 NM_198173 NM_198174 NM_198240 NM_198270 NM_198281 NM_198318 NM_198319 NM_198330 NM_198442 NM_198467 NM_198719 NM_198833 NM_199168 NM_199169 NM_199170 NM_199171 NM_199176 NM_199229 NM_199280 NM_201278 NM_201281 NM_201413 NM_201414 NM_201524 NM_201525 NM_201543 NM_201544 NM_201545 NM_201565 NM_201623 NM_201625 NM_201649 NM_203288 NM_203290 NM_203301 NM_203302 NM_203341 NM_203395 NM_203417 NM_203418 NM_203459 NM_203472 NM_203477 NM_203510 NM_205857 NM_206866 NM_206876 NM_206877 NM_206887 NM_206889 NM_207003 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207306 NM_207318 NM_207326 NM_207368 NM_207438 NM_207442 NM_207448 NM_207454 NM_207460 NM_207468 NM_207475 NM_207479 NM_207488 NM_207495 NM_207646 NM_212469 NM_212530 NM_213633 NM_213651 XM_032996 XM_037557 XM_038150 XM_039393 XM_042698 XM_052561 XM_057107 XM_087353 XM_113967 XM_117213 XM_117294 XM_166132 XM_166320 XM_167147 XM_208443 XM_208847 XM_209824 XM_291253 XM_291344 XM_294765 XM_295091 XM_370758 XM_370839 XM_370899 XM_370932 XM_371053 XM_371369 XM_371461 XM_371838 XM_372420 XM_373559 XM_373890 XM_374078 XM_374086 XM_374317 XM_374399 XM_374768 XM_374945 XM_375697 XM_376247 XM_376454 XM_376679 XM_376680 XM_376784 XM_376902 XM_377028 XM_377476 XM_378388 XM_378460 XM_378542 XM_378650 XM_378750 XM_378787 XM_378799 XM_378835 XM_378876 XM_379041 XM_379074 XM_379114 XM_379146 XM_379194 XM_379267 XM_379318 XM_379395 XM_379433 XM_379458 XM_379510 XM_379629 XM_379639 XM_379650 XM_379927 XM_379933 XM_379934 XM_380131 XM_495807 XM_495909 XM_496088 XM_496408 XM_496436 XM_496467 XM_496901 XM_496943 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_498446 XM_498491 XM_498580 XM_498587 XM_498647 XM_498649 XM_498660 XM_498735 XM_498757 XM_498758 XM_498760 XM_498761 XM_498765 XM_498766 XM_498767 XM_498768 XM_498769 XM_498770 XM_498771 XM_498772 XM_498773 XM_498774 XM_498777 XM_498778 XM_498779 XM_498780 XM_498781 XM_498782 XM_498783 XM_498784 XM_498785 XM_498786 XM_498789 XM_498801 XM_498802 XM_498804 XM_498824 XM_498862 XM_498883 XM_498972 XM_498998 XM_499029 XM_499065 XM_499085 XM_499140 XM_499515 XM_499541 XM_499576 XR_000227	Genes with multiple seed matches: NM_000104 NM_000115 NM_000185 NM_001002034 NM_001005210 NM_001017980 NM_001286 NM_001634 NM_002857 NM_003626 NM_004272 NM_004598 NM_005400 NM_006805 NM_006922 NM_013390 NM_014739 NM_014873 NM_014910 NM_015056 NM_015144 NM_015151 NM_015257 NM_015385 NM_016544 NM_016575 NM_018069 NM_020935 NM_021735 NM_021736 NM_021737 NM_021815 NM_024109 NM_030626 NM_031911 NM_033428 NM_145794 NM_145795 NM_152470 NM_175884 XM_037557 XM_378650 XM_498777 XM_498781 XM_498782 XM_498786 XM_498824

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA