VIRsiRNAdb

Predicted off-targets seeds for siRNA "aaauaaucucagacaucggaa" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :763.
Total Genes with multiple seed matches: 20.
Genes with at least one seed match: NM_000088 NM_000170 NM_000189 NM_000219 NM_000278 NM_000335 NM_000337 NM_000428 NM_000503 NM_000547 NM_000555 NM_000572 NM_000625 NM_000663 NM_000664 NM_000678 NM_000691 NM_000693 NM_000721 NM_000793 NM_001001331 NM_001001344 NM_001001395 NM_001001434 NM_001001485 NM_001001486 NM_001001487 NM_001002914 NM_001003694 NM_001004433 NM_001004720 NM_001004722 NM_001005375 NM_001005388 NM_001005785 NM_001005786 NM_001006606 NM_001006610 NM_001006636 NM_001007023 NM_001007024 NM_001007025 NM_001007102 NM_001007279 NM_001008404 NM_001008493 NM_001008566 NM_001009566 NM_001009909 NM_001010883 NM_001010888 NM_001011703 NM_001012329 NM_001012418 NM_001012424 NM_001012426 NM_001012427 NM_001012754 NM_001012981 NM_001013696 NM_001014373 NM_001014431 NM_001014432 NM_001017370 NM_001017979 NM_001018050 NM_001018051 NM_001018052 NM_001020818 NM_001020819 NM_001020820 NM_001020821 NM_001024372 NM_001024676 NM_001024733 NM_001024808 NM_001024858 NM_001025100 NM_001025105 NM_001025193 NM_001116 NM_001260 NM_001286 NM_001304 NM_001329 NM_001334 NM_001419 NM_001420 NM_001432 NM_001609 NM_001621 NM_001652 NM_001683 NM_001789 NM_001847 NM_001892 NM_001901 NM_001910 NM_001936 NM_002074 NM_002111 NM_002146 NM_002158 NM_002211 NM_002246 NM_002298 NM_002412 NM_002444 NM_002507 NM_002610 NM_002737 NM_002747 NM_002822 NM_002832 NM_002874 NM_002948 NM_002983 NM_003031 NM_003044 NM_003045 NM_003048 NM_003053 NM_003071 NM_003107 NM_003119 NM_003130 NM_003135 NM_003137 NM_003205 NM_003221 NM_003234 NM_003247 NM_003252 NM_003290 NM_003344 NM_003371 NM_003415 NM_003418 NM_003439 NM_003458 NM_003488 NM_003581 NM_003592 NM_003595 NM_003597 NM_003605 NM_003727 NM_003742 NM_003808 NM_003820 NM_003824 NM_003861 NM_003873 NM_003909 NM_003924 NM_003939 NM_003946 NM_003965 NM_003987 NM_003988 NM_003989 NM_003990 NM_004004 NM_004054 NM_004081 NM_004098 NM_004227 NM_004259 NM_004321 NM_004322 NM_004323 NM_004329 NM_004362 NM_004370 NM_004414 NM_004423 NM_004438 NM_004442 NM_004449 NM_004450 NM_004480 NM_004505 NM_004507 NM_004588 NM_004609 NM_004630 NM_004634 NM_004650 NM_004696 NM_004724 NM_004734 NM_004736 NM_004741 NM_004775 NM_004781 NM_004815 NM_004846 NM_004871 NM_004913 NM_004938 NM_004977 NM_004983 NM_005069 NM_005082 NM_005163 NM_005239 NM_005326 NM_005370 NM_005380 NM_005398 NM_005400 NM_005409 NM_005458 NM_005494 NM_005534 NM_005604 NM_005683 NM_005806 NM_005907 NM_005964 NM_005994 NM_006037 NM_006094 NM_006202 NM_006246 NM_006247 NM_006336 NM_006413 NM_006477 NM_006504 NM_006544 NM_006572 NM_006599 NM_006611 NM_006626 NM_006703 NM_006711 NM_006732 NM_006803 NM_006898 NM_006941 NM_006944 NM_006959 NM_007030 NM_007053 NM_007102 NM_007107 NM_007173 NM_007187 NM_007261 NM_007306 NM_007335 NM_007336 NM_007338 NM_012158 NM_012193 NM_012233 NM_012238 NM_012275 NM_012301 NM_012318 NM_012325 NM_012474 NM_013238 NM_013255 NM_013989 NM_014001 NM_014028 NM_014186 NM_014228 NM_014417 NM_014470 NM_014612 NM_014631 NM_014697 NM_014702 NM_014703 NM_014721 NM_014723 NM_014746 NM_014755 NM_014808 NM_014850 NM_014888 NM_014919 NM_014920 NM_014934 NM_014944 NM_014945 NM_014947 NM_015071 NM_015079 NM_015090 NM_015192 NM_015245 NM_015266 NM_015288 NM_015310 NM_015313 NM_015316 NM_015318 NM_015321 NM_015458 NM_015560 NM_015898 NM_015927 NM_015980 NM_016023 NM_016389 NM_016428 NM_016504 NM_016510 NM_016513 NM_016588 NM_016617 NM_017424 NM_017449 NM_017540 NM_017549 NM_017628 NM_017641 NM_017681 NM_017761 NM_017778 NM_017791 NM_017799 NM_017807 NM_017847 NM_017873 NM_017882 NM_017891 NM_018023 NM_018027 NM_018084 NM_018089 NM_018182 NM_018195 NM_018212 NM_018248 NM_018330 NM_018342 NM_018479 NM_018602 NM_018640 NM_018649 NM_018713 NM_018993 NM_019006 NM_019058 NM_019063 NM_019064 NM_020037 NM_020038 NM_020213 NM_020214 NM_020215 NM_020227 NM_020248 NM_020315 NM_020335 NM_020353 NM_020363 NM_020364 NM_020374 NM_020381 NM_020384 NM_020420 NM_020462 NM_020638 NM_020686 NM_020824 NM_020863 NM_020865 NM_020904 NM_020918 NM_020956 NM_020993 NM_021020 NM_021083 NM_021093 NM_021103 NM_021163 NM_021164 NM_021170 NM_021249 NM_021735 NM_021736 NM_021737 NM_021809 NM_021925 NM_021942 NM_021949 NM_022066 NM_022093 NM_022121 NM_022139 NM_022333 NM_022567 NM_022754 NM_022773 NM_022802 NM_022817 NM_023004 NM_023016 NM_023034 NM_023927 NM_023937 NM_024028 NM_024334 NM_024342 NM_024588 NM_024594 NM_024625 NM_024630 NM_024659 NM_024705 NM_024709 NM_024795 NM_024812 NM_024830 NM_024876 NM_024924 NM_024946 NM_025010 NM_025021 NM_025090 NM_025250 NM_030569 NM_030621 NM_030661 NM_030673 NM_030773 NM_030796 NM_030820 NM_030945 NM_030957 NM_031305 NM_031445 NM_031474 NM_031862 NM_032181 NM_032195 NM_032228 NM_032239 NM_032281 NM_032287 NM_032294 NM_032298 NM_032311 NM_032323 NM_032354 NM_032438 NM_032491 NM_032494 NM_032564 NM_032632 NM_032758 NM_032785 NM_032817 NM_032827 NM_032849 NM_032853 NM_032883 NM_032989 NM_033224 NM_033364 NM_033387 NM_033402 NM_033515 NM_033637 NM_033641 NM_052840 NM_052996 NM_053286 NM_054111 NM_057179 NM_058183 NM_058244 NM_080473 NM_080588 NM_080589 NM_080594 NM_080645 NM_080738 NM_080821 NM_080867 NM_080927 NM_130435 NM_130446 NM_130797 NM_130830 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_133261 NM_133332 NM_133333 NM_133464 NM_138298 NM_138338 NM_138373 NM_138433 NM_138457 NM_138566 NM_138619 NM_138640 NM_138713 NM_138714 NM_138724 NM_138811 NM_139028 NM_139048 NM_139062 NM_139179 NM_139246 NM_139275 NM_144973 NM_144991 NM_145117 NM_145349 NM_145350 NM_145351 NM_145646 NM_145762 NM_145763 NM_145809 NM_145861 NM_147166 NM_147180 NM_147202 NM_148570 NM_148571 NM_148894 NM_148964 NM_152233 NM_152235 NM_152323 NM_152362 NM_152384 NM_152403 NM_152439 NM_152470 NM_152487 NM_152493 NM_152595 NM_152738 NM_152891 NM_152943 NM_152988 NM_153239 NM_153256 NM_153263 NM_153292 NM_153343 NM_153609 NM_153631 NM_153632 NM_153634 NM_153712 NM_153746 NM_153809 NM_153812 NM_170743 NM_172058 NM_172059 NM_172060 NM_172087 NM_172088 NM_172089 NM_172206 NM_173064 NM_173065 NM_173170 NM_173214 NM_173459 NM_173477 NM_173551 NM_173562 NM_173599 NM_173640 NM_173643 NM_173674 NM_174901 NM_174972 NM_175617 NM_175719 NM_175721 NM_175722 NM_175733 NM_175852 NM_175872 NM_175875 NM_176815 NM_176871 NM_176878 NM_177405 NM_177438 NM_177999 NM_178136 NM_178151 NM_178152 NM_178153 NM_178154 NM_178155 NM_178156 NM_178157 NM_178226 NM_178562 NM_178857 NM_181435 NM_181701 NM_181704 NM_182482 NM_182488 NM_182511 NM_182533 NM_182546 NM_182574 NM_182583 NM_182643 NM_182697 NM_182734 NM_182744 NM_182798 NM_182799 NM_182801 NM_182812 NM_182830 NM_182918 NM_182925 NM_182964 NM_183065 NM_183352 NM_183382 NM_194252 NM_194290 NM_194303 NM_194312 NM_197956 NM_198056 NM_198321 NM_198442 NM_198462 NM_198481 NM_198508 NM_198835 NM_198859 NM_198901 NM_198968 NM_198974 NM_199053 NM_199341 NM_199421 NM_201565 NM_201567 NM_201995 NM_201998 NM_203395 NM_203417 NM_203418 NM_206887 NM_206909 NM_207036 NM_207037 NM_207038 NM_207040 NM_207103 NM_207336 NM_207370 NM_207371 NM_207393 NM_207463 NM_207479 NM_207505 NM_207514 NM_207646 NM_213594 XM_058720 XM_085463 XM_087386 XM_097580 XM_113947 XM_167152 XM_208438 XM_208545 XM_208990 XM_209607 XM_290737 XM_290809 XM_294521 XM_296817 XM_298151 XM_370575 XM_370654 XM_370665 XM_370758 XM_371204 XM_371838 XM_373506 XM_373583 XM_373714 XM_374341 XM_374414 XM_374945 XM_375042 XM_375491 XM_375558 XM_375713 XM_375747 XM_376207 XM_376241 XM_376587 XM_378202 XM_378272 XM_378301 XM_378309 XM_378312 XM_378390 XM_378473 XM_378567 XM_378667 XM_378703 XM_378712 XM_379069 XM_379096 XM_379123 XM_379437 XM_379595 XM_379597 XM_379643 XM_379664 XM_379665 XM_495868 XM_496358 XM_496608 XM_496879 XM_498457 XM_498459 XM_498502 XM_498610 XM_498647 XM_498652 XM_498728 XM_498823 XM_498825 XM_498899 XM_498929 XM_499054 XM_499065 XM_499298 XM_499309 XM_499499 XM_499515 XM_499586 XM_499589 XR_000194 XR_000261 XR_000274 XR_000292	Genes with multiple seed matches: NM_000664 NM_001024808 NM_001304 NM_002507 NM_002610 NM_003135 NM_003234 NM_004442 NM_005907 NM_006037 NM_006959 NM_007030 NM_014721 NM_014850 NM_017449 NM_020956 NM_020993 NM_033364 NM_198835 XM_375558

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA