VIRsiRNAdb

Predicted off-targets seeds for siRNA "gccgauucauggucgcucu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1462.
Total Genes with multiple seed matches: 126.
Genes with at least one seed match: NM_000037 NM_000046 NM_000148 NM_000163 NM_000182 NM_000201 NM_000215 NM_000216 NM_000239 NM_000246 NM_000264 NM_000268 NM_000278 NM_000295 NM_000307 NM_000346 NM_000356 NM_000364 NM_000401 NM_000413 NM_000432 NM_000476 NM_000478 NM_000545 NM_000557 NM_000576 NM_000577 NM_000602 NM_000611 NM_000620 NM_000633 NM_000635 NM_000641 NM_000691 NM_000705 NM_000724 NM_000747 NM_000786 NM_000791 NM_000832 NM_000833 NM_000870 NM_000878 NM_000887 NM_000896 NM_000901 NM_000935 NM_000961 NM_000991 NM_001001344 NM_001001349 NM_001001430 NM_001001431 NM_001001432 NM_001001523 NM_001001686 NM_001001688 NM_001001698 NM_001001723 NM_001001789 NM_001001791 NM_001001928 NM_001001929 NM_001001930 NM_001001974 NM_001002231 NM_001002232 NM_001002235 NM_001002236 NM_001002296 NM_001002759 NM_001002840 NM_001002916 NM_001003407 NM_001003408 NM_001003698 NM_001003699 NM_001003789 NM_001003794 NM_001003818 NM_001003895 NM_001004285 NM_001004286 NM_001004326 NM_001004331 NM_001004342 NM_001004355 NM_001005360 NM_001005361 NM_001005362 NM_001005404 NM_001005409 NM_001005473 NM_001006115 NM_001006606 NM_001006932 NM_001006946 NM_001007262 NM_001007278 NM_001007529 NM_001007531 NM_001007542 NM_001007543 NM_001007560 NM_001008493 NM_001008530 NM_001008539 NM_001008656 NM_001008658 NM_001008693 NM_001008895 NM_001009812 NM_001009877 NM_001009909 NM_001009939 NM_001010853 NM_001010854 NM_001010866 NM_001010874 NM_001011514 NM_001011658 NM_001012267 NM_001012418 NM_001012424 NM_001012426 NM_001012427 NM_001012733 NM_001012734 NM_001012755 NM_001013617 NM_001013661 NM_001013669 NM_001013677 NM_001013678 NM_001013698 NM_001013707 NM_001013710 NM_001013721 NM_001014440 NM_001014765 NM_001014797 NM_001015886 NM_001017395 NM_001017528 NM_001017529 NM_001017530 NM_001017915 NM_001018050 NM_001018051 NM_001018052 NM_001018081 NM_001018089 NM_001018111 NM_001024226 NM_001024227 NM_001024228 NM_001024401 NM_001024598 NM_001024646 NM_001024666 NM_001024808 NM_001025077 NM_001025079 NM_001025080 NM_001025094 NM_001025098 NM_001025108 NM_001025266 NM_001031 NM_001092 NM_001094 NM_001105 NM_001116 NM_001117 NM_001125 NM_001141 NM_001224 NM_001228 NM_001229 NM_001234 NM_001251 NM_001264 NM_001271 NM_001286 NM_001310 NM_001340 NM_001383 NM_001406 NM_001409 NM_001419 NM_001421 NM_001425 NM_001427 NM_001432 NM_001438 NM_001457 NM_001481 NM_001503 NM_001504 NM_001535 NM_001552 NM_001571 NM_001606 NM_001610 NM_001635 NM_001640 NM_001658 NM_001678 NM_001692 NM_001730 NM_001740 NM_001745 NM_001748 NM_001773 NM_001777 NM_001816 NM_001834 NM_001936 NM_001941 NM_001989 NM_002025 NM_002062 NM_002064 NM_002081 NM_002152 NM_002193 NM_002235 NM_002248 NM_002251 NM_002285 NM_002309 NM_002313 NM_002319 NM_002382 NM_002406 NM_002430 NM_002462 NM_002478 NM_002501 NM_002526 NM_002586 NM_002594 NM_002604 NM_002605 NM_002608 NM_002610 NM_002632 NM_002646 NM_002655 NM_002666 NM_002688 NM_002714 NM_002725 NM_002740 NM_002759 NM_002815 NM_002819 NM_002827 NM_002840 NM_002901 NM_002938 NM_002955 NM_002966 NM_002990 NM_002997 NM_003004 NM_003036 NM_003046 NM_003076 NM_003108 NM_003112 NM_003123 NM_003190 NM_003200 NM_003214 NM_003251 NM_003255 NM_003311 NM_003319 NM_003345 NM_003347 NM_003423 NM_003458 NM_003459 NM_003483 NM_003528 NM_003576 NM_003589 NM_003591 NM_003607 NM_003636 NM_003644 NM_003661 NM_003681 NM_003685 NM_003687 NM_003727 NM_003790 NM_003820 NM_003825 NM_003846 NM_003860 NM_003870 NM_003888 NM_003924 NM_003930 NM_003949 NM_003953 NM_003957 NM_003976 NM_003987 NM_003988 NM_003989 NM_003990 NM_004091 NM_004172 NM_004214 NM_004220 NM_004276 NM_004285 NM_004287 NM_004302 NM_004308 NM_004312 NM_004321 NM_004322 NM_004342 NM_004360 NM_004363 NM_004369 NM_004391 NM_004397 NM_004402 NM_004406 NM_004416 NM_004430 NM_004437 NM_004438 NM_004451 NM_004459 NM_004472 NM_004474 NM_004485 NM_004503 NM_004508 NM_004571 NM_004588 NM_004614 NM_004651 NM_004680 NM_004691 NM_004696 NM_004706 NM_004711 NM_004732 NM_004734 NM_004739 NM_004745 NM_004781 NM_004807 NM_004836 NM_004850 NM_004861 NM_004907 NM_004915 NM_004922 NM_004930 NM_004945 NM_004962 NM_004977 NM_004985 NM_004991 NM_004995 NM_005036 NM_005060 NM_005082 NM_005099 NM_005137 NM_005178 NM_005186 NM_005188 NM_005202 NM_005232 NM_005253 NM_005291 NM_005297 NM_005304 NM_005312 NM_005338 NM_005354 NM_005365 NM_005370 NM_005388 NM_005397 NM_005399 NM_005433 NM_005434 NM_005458 NM_005523 NM_005541 NM_005550 NM_005551 NM_005578 NM_005599 NM_005606 NM_005652 NM_005668 NM_005725 NM_005748 NM_005763 NM_005798 NM_005816 NM_005843 NM_005877 NM_005895 NM_005904 NM_005927 NM_005964 NM_005986 NM_005987 NM_005994 NM_006026 NM_006060 NM_006065 NM_006085 NM_006097 NM_006116 NM_006134 NM_006156 NM_006161 NM_006178 NM_006206 NM_006237 NM_006276 NM_006282 NM_006291 NM_006315 NM_006336 NM_006371 NM_006380 NM_006413 NM_006464 NM_006471 NM_006481 NM_006492 NM_006517 NM_006534 NM_006540 NM_006549 NM_006567 NM_006590 NM_006606 NM_006651 NM_006720 NM_006737 NM_006738 NM_006761 NM_006774 NM_006848 NM_006859 NM_006876 NM_006959 NM_006990 NM_007021 NM_007028 NM_007058 NM_007073 NM_007081 NM_007087 NM_007088 NM_007097 NM_007190 NM_007200 NM_007214 NM_007236 NM_007241 NM_007245 NM_007262 NM_007283 NM_007319 NM_007327 NM_007329 NM_007335 NM_007336 NM_007338 NM_012099 NM_012104 NM_012118 NM_012121 NM_012133 NM_012137 NM_012174 NM_012227 NM_012232 NM_012249 NM_012275 NM_012282 NM_012288 NM_012309 NM_012312 NM_012314 NM_012316 NM_012321 NM_012395 NM_012398 NM_012408 NM_012409 NM_012425 NM_012447 NM_012448 NM_012468 NM_013231 NM_013246 NM_013255 NM_013289 NM_013301 NM_013306 NM_013400 NM_013412 NM_014005 NM_014015 NM_014033 NM_014057 NM_014219 NM_014243 NM_014289 NM_014293 NM_014333 NM_014374 NM_014388 NM_014390 NM_014391 NM_014393 NM_014405 NM_014418 NM_014442 NM_014480 NM_014494 NM_014506 NM_014508 NM_014511 NM_014513 NM_014563 NM_014580 NM_014600 NM_014603 NM_014631 NM_014648 NM_014690 NM_014716 NM_014732 NM_014737 NM_014743 NM_014759 NM_014767 NM_014771 NM_014776 NM_014792 NM_014800 NM_014826 NM_014828 NM_014844 NM_014850 NM_014853 NM_014862 NM_014897 NM_014898 NM_014901 NM_014909 NM_014914 NM_014924 NM_014925 NM_014946 NM_014947 NM_014959 NM_014972 NM_014974 NM_014999 NM_015000 NM_015008 NM_015015 NM_015020 NM_015023 NM_015033 NM_015066 NM_015069 NM_015074 NM_015078 NM_015079 NM_015122 NM_015124 NM_015155 NM_015191 NM_015224 NM_015225 NM_015278 NM_015289 NM_015292 NM_015315 NM_015329 NM_015330 NM_015366 NM_015391 NM_015411 NM_015476 NM_015488 NM_015527 NM_015541 NM_015569 NM_015610 NM_015649 NM_015715 NM_015719 NM_015868 NM_015901 NM_015945 NM_015996 NM_016003 NM_016065 NM_016099 NM_016132 NM_016138 NM_016204 NM_016223 NM_016263 NM_016319 NM_016418 NM_016422 NM_016505 NM_016507 NM_016518 NM_016538 NM_016540 NM_016575 NM_016605 NM_016611 NM_016818 NM_016831 NM_016946 NM_017409 NM_017415 NM_017420 NM_017424 NM_017451 NM_017520 NM_017527 NM_017542 NM_017579 NM_017590 NM_017595 NM_017660 NM_017701 NM_017706 NM_017742 NM_017752 NM_017754 NM_017765 NM_017774 NM_017790 NM_017833 NM_017849 NM_017873 NM_017920 NM_017921 NM_017929 NM_018045 NM_018059 NM_018110 NM_018181 NM_018197 NM_018212 NM_018223 NM_018240 NM_018265 NM_018273 NM_018294 NM_018324 NM_018390 NM_018401 NM_018498 NM_018530 NM_018553 NM_018655 NM_018657 NM_018660 NM_018715 NM_018719 NM_018728 NM_018942 NM_018947 NM_018959 NM_018964 NM_018976 NM_018991 NM_018992 NM_019066 NM_019119 NM_020038 NM_020064 NM_020132 NM_020133 NM_020161 NM_020170 NM_020182 NM_020207 NM_020210 NM_020338 NM_020340 NM_020381 NM_020416 NM_020426 NM_020445 NM_020447 NM_020475 NM_020476 NM_020477 NM_020535 NM_020654 NM_020655 NM_020673 NM_020689 NM_020708 NM_020710 NM_020714 NM_020737 NM_020766 NM_020777 NM_020778 NM_020814 NM_020820 NM_020836 NM_020844 NM_020870 NM_020896 NM_020962 NM_020993 NM_021012 NM_021020 NM_021064 NM_021080 NM_021116 NM_021135 NM_021155 NM_021163 NM_021213 NM_021569 NM_021622 NM_021638 NM_021643 NM_021735 NM_021736 NM_021737 NM_021795 NM_021805 NM_021813 NM_021824 NM_021924 NM_021935 NM_021949 NM_021962 NM_022059 NM_022088 NM_022114 NM_022151 NM_022444 NM_022462 NM_022463 NM_022478 NM_022480 NM_022570 NM_022572 NM_022725 NM_022733 NM_022754 NM_022781 NM_023032 NM_023067 NM_023923 NM_023924 NM_023936 NM_024006 NM_024016 NM_024022 NM_024037 NM_024046 NM_024060 NM_024092 NM_024298 NM_024328 NM_024336 NM_024416 NM_024423 NM_024492 NM_024507 NM_024509 NM_024527 NM_024557 NM_024558 NM_024569 NM_024590 NM_024611 NM_024627 NM_024686 NM_024729 NM_024735 NM_024738 NM_024794 NM_024816 NM_024876 NM_024922 NM_024929 NM_024943 NM_024974 NM_025030 NM_025041 NM_025129 NM_025154 NM_025159 NM_025194 NM_025218 NM_025224 NM_025251 NM_030621 NM_030651 NM_030774 NM_030882 NM_030913 NM_030918 NM_030925 NM_030952 NM_031205 NM_031211 NM_031264 NM_031265 NM_031296 NM_031297 NM_031448 NM_031479 NM_031892 NM_031896 NM_031913 NM_031936 NM_031945 NM_031990 NM_031991 NM_032019 NM_032109 NM_032153 NM_032262 NM_032276 NM_032285 NM_032287 NM_032296 NM_032317 NM_032341 NM_032349 NM_032401 NM_032404 NM_032529 NM_032539 NM_032569 NM_032575 NM_032620 NM_032622 NM_032635 NM_032638 NM_032701 NM_032732 NM_032781 NM_032792 NM_032809 NM_032828 NM_032854 NM_032932 NM_032933 NM_032982 NM_032983 NM_032984 NM_032989 NM_032996 NM_033014 NM_033016 NM_033064 NM_033120 NM_033129 NM_033138 NM_033139 NM_033140 NM_033157 NM_033161 NM_033182 NM_033224 NM_033337 NM_033355 NM_033356 NM_033357 NM_033360 NM_033386 NM_033387 NM_033409 NM_033426 NM_033505 NM_033551 NM_052811 NM_052816 NM_052847 NM_052851 NM_052861 NM_052903 NM_052910 NM_052916 NM_052918 NM_052928 NM_052933 NM_052947 NM_052966 NM_052997 NM_053002 NM_053277 NM_054027 NM_054111 NM_057090 NM_057091 NM_057160 NM_057164 NM_057165 NM_057166 NM_057167 NM_057169 NM_057170 NM_058166 NM_058178 NM_058186 NM_058246 NM_078483 NM_080625 NM_080665 NM_080723 NM_080738 NM_080836 NM_080879 NM_130440 NM_130442 NM_130469 NM_130783 NM_130797 NM_130798 NM_130830 NM_133328 NM_133371 NM_133373 NM_133378 NM_133432 NM_133437 NM_133445 NM_133496 NM_134269 NM_134433 NM_134434 NM_138278 NM_138287 NM_138300 NM_138338 NM_138457 NM_138572 NM_138706 NM_138764 NM_138781 NM_138971 NM_138972 NM_138973 NM_138983 NM_139057 NM_139058 NM_139071 NM_139176 NM_139316 NM_144502 NM_144503 NM_144504 NM_144586 NM_144600 NM_144613 NM_144615 NM_144617 NM_144707 NM_144724 NM_144767 NM_144985 NM_145012 NM_145050 NM_145060 NM_145112 NM_145113 NM_145173 NM_145175 NM_145179 NM_145247 NM_145253 NM_145260 NM_145298 NM_145309 NM_145326 NM_145343 NM_145344 NM_145347 NM_145348 NM_145637 NM_145638 NM_145804 NM_145818 NM_145861 NM_147147 NM_147159 NM_147160 NM_147193 NM_147777 NM_148171 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148971 NM_148972 NM_148973 NM_148974 NM_152253 NM_152263 NM_152280 NM_152357 NM_152371 NM_152435 NM_152458 NM_152476 NM_152494 NM_152525 NM_152547 NM_152597 NM_152611 NM_152618 NM_152654 NM_152660 NM_152673 NM_152701 NM_152724 NM_152776 NM_152857 NM_152858 NM_152909 NM_152939 NM_153034 NM_153219 NM_153229 NM_153239 NM_153261 NM_153273 NM_153337 NM_153344 NM_153348 NM_153350 NM_153442 NM_153443 NM_153462 NM_153463 NM_153487 NM_153499 NM_153500 NM_153611 NM_153691 NM_153693 NM_153837 NM_170696 NM_170697 NM_170711 NM_170773 NM_170774 NM_171982 NM_171999 NM_172000 NM_172037 NM_172101 NM_172102 NM_172130 NM_172213 NM_172216 NM_172226 NM_173073 NM_173170 NM_173179 NM_173354 NM_173454 NM_173455 NM_173456 NM_173457 NM_173509 NM_173557 NM_173558 NM_173564 NM_173584 NM_173608 NM_173627 NM_173653 NM_173657 NM_173667 NM_173677 NM_173728 NM_173793 NM_173795 NM_173803 NM_173828 NM_173841 NM_173842 NM_173843 NM_173855 NM_174900 NM_174934 NM_174952 NM_175061 NM_175736 NM_175747 NM_175847 NM_175898 NM_175901 NM_177405 NM_177427 NM_177438 NM_177539 NM_177977 NM_177999 NM_178006 NM_178007 NM_178126 NM_178145 NM_178171 NM_178228 NM_178422 NM_178450 NM_178514 NM_178527 NM_180989 NM_181293 NM_181298 NM_181299 NM_181333 NM_181526 NM_181659 NM_181698 NM_181701 NM_181776 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181836 NM_181844 NM_181846 NM_181876 NM_182487 NM_182495 NM_182507 NM_182509 NM_182558 NM_182564 NM_182584 NM_182641 NM_182700 NM_182752 NM_182767 NM_182901 NM_182943 NM_182970 NM_183047 NM_183048 NM_183373 NM_183377 NM_183412 NM_183413 NM_194071 NM_194259 NM_194260 NM_194261 NM_194294 NM_194295 NM_194328 NM_194329 NM_194330 NM_194331 NM_194332 NM_194352 NM_194451 NM_197947 NM_197948 NM_197949 NM_197950 NM_197951 NM_197952 NM_197953 NM_197976 NM_198138 NM_198157 NM_198196 NM_198392 NM_198402 NM_198458 NM_198537 NM_198549 NM_198554 NM_198557 NM_198572 NM_198576 NM_198582 NM_198595 NM_198597 NM_198679 NM_198686 NM_198722 NM_198793 NM_198851 NM_198897 NM_198900 NM_198925 NM_198946 NM_198956 NM_198977 NM_199002 NM_199131 NM_199169 NM_199170 NM_199171 NM_199173 NM_199182 NM_199262 NM_199265 NM_199296 NM_199343 NM_199426 NM_199436 NM_199454 NM_201348 NM_201432 NM_201433 NM_201570 NM_201571 NM_201572 NM_201590 NM_201593 NM_201596 NM_201597 NM_201628 NM_203307 NM_203329 NM_203330 NM_203331 NM_203342 NM_203343 NM_203373 NM_203400 NM_206594 NM_206595 NM_206824 NM_206828 NM_206887 NM_206893 NM_206962 NM_206964 NM_207032 NM_207122 NM_207174 NM_207191 NM_207306 NM_207358 NM_207362 NM_207386 NM_207395 NM_207401 NM_207430 NM_207440 NM_207445 NM_207451 NM_207454 NM_207472 NM_207478 NM_207481 NM_207483 NM_207497 NM_207499 NM_207514 NM_207627 NM_207628 NM_207629 NM_207630 NM_212533 NM_213590 NM_213598 NM_213600 NM_213606 XM_028810 XM_030378 XM_031104 XM_032278 XM_044178 XM_057107 XM_058931 XM_059689 XM_087353 XM_117117 XM_171855 XM_172801 XM_208443 XM_209163 XM_209429 XM_209505 XM_209569 XM_209607 XM_290502 XM_290712 XM_291344 XM_293380 XM_370838 XM_370928 XM_370932 XM_371074 XM_371151 XM_371230 XM_371461 XM_371617 XM_371672 XM_371801 XM_371820 XM_372019 XM_372028 XM_372030 XM_372198 XM_372267 XM_372556 XM_372716 XM_372723 XM_373500 XM_373543 XM_373561 XM_373748 XM_373786 XM_373848 XM_373894 XM_374766 XM_375292 XM_375373 XM_375606 XM_375669 XM_376049 XM_376254 XM_376303 XM_376350 XM_376372 XM_376454 XM_376727 XM_376905 XM_377076 XM_378299 XM_378321 XM_378331 XM_378355 XM_378374 XM_378456 XM_378487 XM_378538 XM_378544 XM_378553 XM_378617 XM_378628 XM_378639 XM_378678 XM_378692 XM_378703 XM_378760 XM_378787 XM_378822 XM_378823 XM_378855 XM_378860 XM_378883 XM_378914 XM_378941 XM_378949 XM_378964 XM_379161 XM_379234 XM_379243 XM_379254 XM_379276 XM_379309 XM_379378 XM_379380 XM_379417 XM_379485 XM_379594 XM_379619 XM_379637 XM_379643 XM_379656 XM_379780 XM_379979 XM_380104 XM_495807 XM_495886 XM_496036 XM_496143 XM_496191 XM_496216 XM_496328 XM_496349 XM_496584 XM_496603 XM_496836 XM_496907 XM_497181 XM_498467 XM_498491 XM_498497 XM_498511 XM_498532 XM_498563 XM_498614 XM_498619 XM_498620 XM_498633 XM_498662 XM_498693 XM_498748 XM_498812 XM_498828 XM_498844 XM_498894 XM_498933 XM_499005 XM_499009 XM_499029 XM_499047 XM_499056 XM_499072 XM_499139 XM_499146 XM_499147 XM_499148 XM_499149 XM_499155 XM_499309 XM_499343 XM_499503 XM_499525 XM_499597 XR_000167 XR_000190 XR_000216 XR_000269	Genes with multiple seed matches: NM_000307 NM_000786 NM_000870 NM_001001928 NM_001001929 NM_001001930 NM_001005409 NM_001006946 NM_001012426 NM_001012427 NM_001012733 NM_001012734 NM_001013677 NM_001014440 NM_001014765 NM_001015886 NM_001116 NM_001251 NM_001481 NM_001989 NM_002309 NM_002604 NM_002997 NM_003108 NM_003190 NM_003483 NM_003528 NM_004308 NM_004342 NM_004503 NM_004588 NM_004745 NM_004922 NM_005036 NM_005137 NM_005877 NM_006380 NM_006549 NM_006761 NM_007214 NM_012448 NM_014732 NM_014909 NM_014974 NM_015015 NM_015023 NM_015033 NM_015569 NM_017590 NM_018045 NM_018181 NM_018294 NM_018728 NM_020132 NM_020133 NM_020381 NM_020689 NM_020714 NM_020778 NM_021116 NM_021155 NM_021949 NM_022114 NM_023067 NM_024016 NM_025154 NM_030882 NM_030913 NM_031945 NM_032019 NM_032109 NM_032276 NM_032809 NM_032932 NM_032983 NM_032984 NM_033138 NM_033139 NM_033140 NM_033157 NM_033161 NM_033182 NM_052910 NM_052928 NM_078483 NM_138457 NM_138983 NM_144707 NM_145175 NM_145637 NM_153499 NM_153500 NM_153693 NM_153837 NM_172216 NM_172226 NM_173354 NM_173657 NM_173795 NM_173803 NM_181826 NM_181827 NM_182584 NM_183412 NM_183413 NM_198597 NM_199454 NM_207362 NM_207386 NM_207440 NM_207451 NM_207478 XM_087353 XM_370932 XM_371074 XM_371151 XM_373786 XM_375373 XM_378544 XM_378639 XM_378860 XM_379276 XM_379619 XM_496603 XM_498491 XM_498563

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA