VIRsiRNAdb

Predicted off-targets seeds for siRNA "cgccgauucauggucgcuc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :914.
Total Genes with multiple seed matches: 74.
Genes with at least one seed match: NM_000037 NM_000160 NM_000181 NM_000192 NM_000216 NM_000272 NM_000278 NM_000334 NM_000401 NM_000545 NM_000598 NM_000620 NM_000629 NM_000705 NM_000747 NM_000870 NM_000960 NM_001001523 NM_001001552 NM_001001665 NM_001001681 NM_001001686 NM_001001688 NM_001001691 NM_001001705 NM_001001723 NM_001001791 NM_001001890 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001002296 NM_001002810 NM_001002857 NM_001002858 NM_001003406 NM_001003407 NM_001003408 NM_001003800 NM_001004055 NM_001004285 NM_001004286 NM_001004433 NM_001004720 NM_001004722 NM_001005340 NM_001005417 NM_001005505 NM_001006946 NM_001007097 NM_001007466 NM_001007560 NM_001008493 NM_001008742 NM_001008744 NM_001008745 NM_001009566 NM_001009877 NM_001010866 NM_001010874 NM_001010924 NM_001010925 NM_001011708 NM_001012239 NM_001012339 NM_001012426 NM_001012427 NM_001012446 NM_001012614 NM_001012733 NM_001012734 NM_001013398 NM_001013669 NM_001013671 NM_001013673 NM_001013677 NM_001013678 NM_001013713 NM_001013720 NM_001013721 NM_001013723 NM_001014279 NM_001014283 NM_001014811 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001015047 NM_001015886 NM_001017395 NM_001017922 NM_001017995 NM_001018025 NM_001018061 NM_001018062 NM_001018089 NM_001023565 NM_001024226 NM_001024227 NM_001024228 NM_001024592 NM_001024676 NM_001024808 NM_001024843 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001080 NM_001135 NM_001183 NM_001257 NM_001310 NM_001327 NM_001328 NM_001400 NM_001409 NM_001427 NM_001438 NM_001481 NM_001490 NM_001495 NM_001500 NM_001530 NM_001535 NM_001584 NM_001608 NM_001658 NM_001696 NM_001748 NM_001754 NM_001775 NM_001806 NM_001895 NM_001905 NM_001936 NM_001987 NM_002025 NM_002055 NM_002071 NM_002105 NM_002152 NM_002163 NM_002171 NM_002178 NM_002249 NM_002309 NM_002313 NM_002382 NM_002385 NM_002510 NM_002526 NM_002531 NM_002553 NM_002582 NM_002608 NM_002613 NM_002617 NM_002725 NM_002737 NM_002755 NM_002827 NM_002857 NM_002879 NM_002966 NM_002997 NM_003004 NM_003010 NM_003011 NM_003024 NM_003026 NM_003036 NM_003038 NM_003045 NM_003107 NM_003205 NM_003347 NM_003378 NM_003400 NM_003471 NM_003483 NM_003486 NM_003581 NM_003591 NM_003636 NM_003648 NM_003679 NM_003683 NM_003780 NM_003846 NM_003924 NM_003926 NM_003930 NM_003987 NM_003988 NM_003989 NM_003990 NM_004004 NM_004039 NM_004142 NM_004204 NM_004210 NM_004229 NM_004308 NM_004309 NM_004363 NM_004402 NM_004406 NM_004439 NM_004462 NM_004495 NM_004507 NM_004571 NM_004586 NM_004603 NM_004614 NM_004622 NM_004691 NM_004732 NM_004745 NM_004747 NM_004796 NM_004821 NM_004823 NM_004850 NM_004854 NM_004915 NM_004926 NM_004991 NM_005036 NM_005060 NM_005116 NM_005184 NM_005189 NM_005226 NM_005228 NM_005232 NM_005253 NM_005312 NM_005338 NM_005491 NM_005493 NM_005539 NM_005599 NM_005638 NM_005647 NM_005650 NM_005702 NM_005810 NM_005816 NM_005883 NM_005884 NM_005909 NM_005937 NM_005964 NM_005975 NM_005986 NM_006026 NM_006030 NM_006039 NM_006060 NM_006074 NM_006094 NM_006141 NM_006156 NM_006162 NM_006176 NM_006262 NM_006268 NM_006278 NM_006315 NM_006380 NM_006492 NM_006497 NM_006540 NM_006549 NM_006651 NM_006667 NM_006680 NM_006720 NM_006734 NM_006736 NM_006738 NM_006762 NM_006775 NM_006779 NM_006876 NM_006908 NM_006943 NM_006959 NM_006991 NM_007011 NM_007043 NM_007050 NM_007078 NM_007106 NM_007144 NM_007157 NM_007188 NM_007200 NM_007260 NM_007262 NM_007329 NM_007353 NM_012074 NM_012140 NM_012163 NM_012225 NM_012249 NM_012288 NM_012292 NM_012341 NM_012387 NM_012420 NM_012455 NM_012471 NM_013227 NM_013231 NM_013261 NM_013337 NM_013341 NM_013392 NM_013411 NM_013433 NM_014138 NM_014157 NM_014183 NM_014211 NM_014242 NM_014243 NM_014311 NM_014331 NM_014333 NM_014351 NM_014437 NM_014567 NM_014580 NM_014615 NM_014634 NM_014663 NM_014665 NM_014727 NM_014732 NM_014743 NM_014773 NM_014776 NM_014792 NM_014832 NM_014844 NM_014850 NM_014854 NM_014862 NM_014864 NM_014912 NM_014914 NM_014919 NM_014944 NM_014947 NM_014972 NM_015008 NM_015020 NM_015023 NM_015063 NM_015088 NM_015138 NM_015155 NM_015176 NM_015198 NM_015215 NM_015229 NM_015245 NM_015246 NM_015265 NM_015267 NM_015329 NM_015330 NM_015378 NM_015381 NM_015527 NM_015541 NM_015549 NM_015568 NM_015719 NM_015722 NM_015894 NM_015959 NM_015981 NM_016028 NM_016057 NM_016081 NM_016099 NM_016114 NM_016223 NM_016263 NM_016319 NM_016407 NM_016423 NM_016453 NM_016523 NM_016575 NM_016611 NM_016818 NM_016831 NM_016936 NM_016953 NM_017409 NM_017542 NM_017554 NM_017563 NM_017577 NM_017579 NM_017714 NM_017716 NM_017742 NM_017920 NM_017990 NM_017994 NM_018026 NM_018058 NM_018059 NM_018121 NM_018156 NM_018178 NM_018181 NM_018185 NM_018212 NM_018223 NM_018243 NM_018247 NM_018263 NM_018270 NM_018273 NM_018290 NM_018306 NM_018319 NM_018332 NM_018390 NM_018401 NM_018419 NM_018420 NM_018440 NM_018538 NM_018579 NM_018602 NM_018663 NM_018713 NM_018715 NM_018836 NM_018890 NM_018942 NM_018947 NM_019040 NM_019606 NM_020126 NM_020132 NM_020133 NM_020182 NM_020245 NM_020394 NM_020425 NM_020433 NM_020452 NM_020475 NM_020476 NM_020477 NM_020638 NM_020639 NM_020648 NM_020655 NM_020714 NM_020715 NM_020777 NM_020877 NM_020960 NM_020981 NM_020993 NM_020994 NM_020999 NM_021012 NM_021033 NM_021095 NM_021096 NM_021116 NM_021155 NM_021168 NM_021201 NM_021208 NM_021570 NM_021805 NM_021915 NM_021934 NM_022050 NM_022114 NM_022130 NM_022135 NM_022359 NM_022464 NM_022469 NM_022473 NM_022477 NM_022819 NM_022918 NM_023010 NM_023067 NM_023924 NM_024071 NM_024110 NM_024336 NM_024337 NM_024342 NM_024492 NM_024544 NM_024578 NM_024580 NM_024611 NM_024616 NM_024633 NM_024667 NM_024676 NM_024758 NM_024794 NM_024900 NM_024955 NM_024986 NM_025159 NM_025197 NM_025250 NM_030621 NM_030622 NM_030651 NM_030773 NM_030806 NM_030882 NM_030911 NM_031215 NM_031268 NM_031297 NM_031363 NM_031364 NM_031365 NM_031366 NM_031434 NM_031449 NM_031475 NM_031899 NM_031918 NM_032010 NM_032013 NM_032227 NM_032262 NM_032289 NM_032349 NM_032366 NM_032375 NM_032536 NM_032638 NM_032714 NM_032718 NM_032826 NM_032853 NM_032854 NM_032866 NM_032883 NM_033016 NM_033100 NM_033111 NM_033161 NM_033310 NM_033311 NM_033387 NM_033446 NM_033448 NM_033631 NM_052813 NM_052847 NM_052862 NM_052865 NM_052903 NM_052906 NM_052909 NM_057161 NM_057169 NM_057170 NM_058169 NM_058172 NM_080389 NM_080605 NM_080632 NM_080665 NM_080717 NM_080723 NM_080789 NM_080790 NM_080865 NM_080867 NM_130797 NM_133170 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133336 NM_133371 NM_134269 NM_134422 NM_134423 NM_134424 NM_138287 NM_138298 NM_138316 NM_138372 NM_138457 NM_138820 NM_138970 NM_138998 NM_139028 NM_139057 NM_139250 NM_139278 NM_144601 NM_144645 NM_144767 NM_145035 NM_145112 NM_145113 NM_145167 NM_145185 NM_145253 NM_145257 NM_145307 NM_145637 NM_145648 NM_145804 NM_145818 NM_145891 NM_145892 NM_145893 NM_146388 NM_147193 NM_148977 NM_148978 NM_152253 NM_152272 NM_152311 NM_152333 NM_152362 NM_152435 NM_152437 NM_152470 NM_152547 NM_152597 NM_152684 NM_152760 NM_152828 NM_152879 NM_152913 NM_152924 NM_153220 NM_153229 NM_153235 NM_153256 NM_153345 NM_153487 NM_153499 NM_153500 NM_153714 NM_153818 NM_170740 NM_170768 NM_170782 NM_171825 NM_172020 NM_172130 NM_172138 NM_172159 NM_172160 NM_172216 NM_172226 NM_172377 NM_172387 NM_172388 NM_172389 NM_173551 NM_173564 NM_173566 NM_173590 NM_173631 NM_173643 NM_173661 NM_173675 NM_173677 NM_173680 NM_173682 NM_173683 NM_173698 NM_173804 NM_173805 NM_174929 NM_174976 NM_175053 NM_175901 NM_176095 NM_176816 NM_176874 NM_177427 NM_177438 NM_177559 NM_177560 NM_177953 NM_178145 NM_178276 NM_178523 NM_178544 NM_178841 NM_181054 NM_181353 NM_181484 NM_181486 NM_181492 NM_181553 NM_181554 NM_181555 NM_181701 NM_181706 NM_181784 NM_181836 NM_181862 NM_181863 NM_182472 NM_182487 NM_182503 NM_182510 NM_182527 NM_182557 NM_182562 NM_182564 NM_182643 NM_182978 NM_183425 NM_184231 NM_194071 NM_194283 NM_194294 NM_194314 NM_197956 NM_198157 NM_198196 NM_198253 NM_198254 NM_198457 NM_198463 NM_198479 NM_198542 NM_198572 NM_198679 NM_198690 NM_198693 NM_198829 NM_198989 NM_199050 NM_199141 NM_199169 NM_199170 NM_199171 NM_199173 NM_199421 NM_199454 NM_201348 NM_201520 NM_201565 NM_203306 NM_203327 NM_203400 NM_206594 NM_206595 NM_206938 NM_206939 NM_206940 NM_206962 NM_207036 NM_207037 NM_207038 NM_207040 NM_207122 NM_207174 NM_207358 NM_207362 NM_207383 NM_207385 NM_207391 NM_207395 NM_207428 NM_207432 NM_207445 NM_207451 NM_207453 NM_207480 NM_207483 NM_207489 NM_207497 NM_207517 NM_207627 NM_207628 NM_207629 NM_207630 NM_212555 NM_212556 NM_213606 NM_214462 XM_032901 XM_032945 XM_051264 XM_052561 XM_058720 XM_059689 XM_059909 XM_062871 XM_087353 XM_166140 XM_166320 XM_171855 XM_208438 XM_208847 XM_209429 XM_209607 XM_290401 XM_290540 XM_290923 XM_291277 XM_292785 XM_351948 XM_370603 XM_370932 XM_371151 XM_371617 XM_372267 XM_373500 XM_373798 XM_373886 XM_373896 XM_373914 XM_374099 XM_375042 XM_375185 XM_375307 XM_375558 XM_375697 XM_375929 XM_376303 XM_376372 XM_376680 XM_378259 XM_378299 XM_378355 XM_378356 XM_378360 XM_378535 XM_378625 XM_378639 XM_378698 XM_378758 XM_378787 XM_378798 XM_378823 XM_378843 XM_378949 XM_378976 XM_379234 XM_379243 XM_379258 XM_379318 XM_379417 XM_379434 XM_379456 XM_379597 XM_379656 XM_379877 XM_379934 XM_380171 XM_495807 XM_495881 XM_495918 XM_496143 XM_496351 XM_496405 XM_496822 XM_496836 XM_496895 XM_497012 XM_498451 XM_498646 XM_498750 XM_498812 XM_498949 XM_499047 XM_499051 XM_499056 XM_499152 XM_499155 XM_499323 XM_499503 XM_499581 XM_499602 XR_000194 XR_000256 XR_000263 XR_000268	Genes with multiple seed matches: NM_000192 NM_000620 NM_001001665 NM_001001928 NM_001001929 NM_001001930 NM_001006946 NM_001010924 NM_001012426 NM_001012427 NM_001024808 NM_001025094 NM_001025098 NM_001310 NM_001748 NM_002309 NM_002613 NM_002997 NM_003648 NM_003926 NM_004204 NM_004614 NM_004745 NM_005036 NM_005116 NM_005816 NM_005883 NM_005964 NM_006162 NM_006908 NM_006943 NM_007188 NM_014138 NM_015155 NM_015229 NM_016057 NM_016611 NM_017554 NM_018890 NM_020639 NM_020993 NM_021116 NM_022469 NM_023067 NM_024342 NM_030621 NM_031268 NM_032262 NM_052847 NM_080717 NM_138298 NM_138457 NM_152253 NM_152437 NM_152879 NM_172387 NM_172388 NM_172389 NM_173590 NM_177438 NM_181486 NM_181862 NM_181863 NM_182510 NM_198196 NM_198690 NM_198693 NM_198829 NM_203327 NM_203400 NM_207362 XM_375042 XM_378625 XR_000194

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA