VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gacgggauaaauuucgcaa"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
788
.
Total Genes with multiple seed matches:
30
.
Genes with at least one seed match:
NM_000206 NM_000222 NM_000248 NM_000252 NM_000330 NM_000362 NM_000368 NM_000455 NM_000538 NM_000545 NM_000555 NM_000611 NM_000647 NM_000704 NM_000792 NM_000799 NM_000817 NM_000896 NM_000908 NM_000921 NM_001001418 NM_001001503 NM_001001549 NM_001001550 NM_001001555 NM_001001677 NM_001001703 NM_001001928 NM_001001929 NM_001001930 NM_001002909 NM_001002926 NM_001003399 NM_001003698 NM_001003699 NM_001003936 NM_001004313 NM_001004321 NM_001004338 NM_001004352 NM_001004440 NM_001005502 NM_001006616 NM_001006932 NM_001007176 NM_001007258 NM_001007262 NM_001007467 NM_001008239 NM_001008401 NM_001008408 NM_001009553 NM_001009566 NM_001009883 NM_001010000 NM_001010846 NM_001010903 NM_001010913 NM_001011513 NM_001011514 NM_001011554 NM_001011703 NM_001012420 NM_001012423 NM_001012452 NM_001012626 NM_001012642 NM_001012729 NM_001012733 NM_001012734 NM_001012754 NM_001012978 NM_001013031 NM_001013624 NM_001013695 NM_001013717 NM_001014373 NM_001014445 NM_001014797 NM_001017370 NM_001017392 NM_001017520 NM_001017930 NM_001018029 NM_001018058 NM_001018089 NM_001024216 NM_001024657 NM_001025108 NM_001026 NM_001043 NM_001154 NM_001222 NM_001259 NM_001348 NM_001362 NM_001419 NM_001442 NM_001495 NM_001497 NM_001681 NM_001715 NM_001723 NM_001759 NM_001764 NM_001821 NM_001846 NM_001859 NM_001874 NM_001889 NM_001898 NM_001932 NM_002017 NM_002073 NM_002139 NM_002147 NM_002182 NM_002223 NM_002285 NM_002288 NM_002356 NM_002382 NM_002392 NM_002428 NM_002460 NM_002588 NM_002605 NM_002628 NM_002639 NM_002660 NM_002709 NM_002911 NM_002942 NM_002955 NM_003002 NM_003023 NM_003038 NM_003045 NM_003082 NM_003094 NM_003102 NM_003124 NM_003184 NM_003189 NM_003204 NM_003215 NM_003262 NM_003319 NM_003328 NM_003387 NM_003403 NM_003417 NM_003488 NM_003505 NM_003586 NM_003590 NM_003592 NM_003605 NM_003617 NM_003681 NM_003701 NM_003735 NM_003736 NM_003808 NM_003840 NM_003872 NM_003910 NM_003924 NM_003950 NM_004088 NM_004116 NM_004239 NM_004368 NM_004389 NM_004393 NM_004395 NM_004409 NM_004438 NM_004454 NM_004455 NM_004481 NM_004513 NM_004614 NM_004721 NM_004730 NM_004745 NM_004842 NM_004865 NM_004898 NM_004947 NM_004949 NM_004959 NM_004968 NM_004982 NM_005032 NM_005036 NM_005041 NM_005044 NM_005059 NM_005116 NM_005160 NM_005188 NM_005197 NM_005240 NM_005311 NM_005334 NM_005337 NM_005342 NM_005477 NM_005479 NM_005585 NM_005688 NM_005711 NM_005740 NM_005742 NM_005829 NM_005831 NM_005837 NM_005840 NM_005858 NM_005883 NM_005940 NM_005957 NM_005999 NM_006004 NM_006015 NM_006016 NM_006122 NM_006148 NM_006176 NM_006234 NM_006266 NM_006270 NM_006315 NM_006322 NM_006359 NM_006454 NM_006457 NM_006553 NM_006572 NM_006641 NM_006722 NM_006731 NM_006748 NM_006753 NM_006777 NM_006839 NM_006861 NM_006873 NM_006874 NM_006878 NM_006879 NM_006880 NM_006881 NM_006882 NM_006908 NM_007066 NM_007084 NM_007207 NM_007232 NM_012083 NM_012106 NM_012171 NM_012184 NM_012232 NM_012234 NM_012252 NM_012300 NM_012309 NM_012344 NM_012425 NM_012429 NM_012443 NM_012468 NM_012481 NM_013250 NM_013345 NM_014038 NM_014077 NM_014112 NM_014157 NM_014243 NM_014275 NM_014293 NM_014360 NM_014392 NM_014418 NM_014604 NM_014631 NM_014649 NM_014653 NM_014733 NM_014775 NM_014787 NM_014801 NM_014837 NM_014876 NM_014919 NM_014926 NM_014930 NM_014944 NM_014964 NM_014974 NM_015035 NM_015086 NM_015092 NM_015115 NM_015170 NM_015191 NM_015227 NM_015266 NM_015289 NM_015308 NM_015335 NM_015409 NM_015443 NM_015458 NM_015481 NM_015541 NM_015554 NM_015568 NM_015651 NM_015721 NM_015831 NM_015855 NM_015891 NM_015981 NM_015983 NM_016021 NM_016073 NM_016114 NM_016122 NM_016169 NM_016257 NM_016377 NM_016399 NM_016422 NM_016436 NM_016570 NM_016571 NM_016589 NM_016622 NM_016734 NM_017438 NM_017556 NM_017582 NM_017592 NM_017594 NM_017705 NM_017729 NM_017758 NM_017799 NM_017926 NM_017972 NM_017991 NM_018032 NM_018061 NM_018073 NM_018075 NM_018088 NM_018096 NM_018131 NM_018286 NM_018409 NM_018450 NM_018571 NM_018890 NM_018912 NM_018913 NM_018914 NM_018915 NM_018916 NM_018917 NM_018918 NM_018919 NM_018920 NM_018921 NM_018922 NM_018923 NM_018924 NM_018925 NM_018926 NM_018927 NM_018928 NM_018929 NM_018941 NM_018945 NM_018955 NM_018984 NM_019022 NM_019089 NM_019117 NM_019594 NM_019884 NM_020122 NM_020133 NM_020167 NM_020182 NM_020228 NM_020359 NM_020443 NM_020673 NM_020699 NM_020714 NM_020773 NM_020813 NM_020836 NM_020851 NM_020854 NM_020894 NM_020918 NM_020940 NM_020946 NM_020947 NM_021075 NM_021110 NM_021135 NM_021260 NM_021270 NM_021633 NM_021638 NM_021642 NM_021820 NM_021832 NM_021945 NM_021977 NM_022049 NM_022050 NM_022051 NM_022062 NM_022094 NM_022308 NM_022460 NM_022463 NM_022479 NM_022764 NM_022777 NM_022828 NM_022829 NM_022905 NM_023112 NM_024047 NM_024071 NM_024076 NM_024299 NM_024319 NM_024422 NM_024522 NM_024605 NM_024607 NM_024611 NM_024722 NM_024749 NM_024820 NM_024859 NM_024949 NM_025160 NM_025218 NM_025224 NM_030627 NM_030774 NM_030806 NM_030814 NM_030943 NM_031200 NM_031913 NM_032039 NM_032088 NM_032092 NM_032101 NM_032174 NM_032228 NM_032229 NM_032258 NM_032262 NM_032291 NM_032294 NM_032329 NM_032403 NM_032432 NM_032486 NM_032539 NM_032632 NM_032646 NM_032681 NM_032706 NM_032827 NM_032829 NM_032845 NM_032861 NM_032920 NM_033012 NM_033022 NM_033066 NM_033131 NM_033224 NM_033419 NM_033446 NM_033644 NM_033645 NM_052846 NM_052862 NM_052869 NM_052918 NM_052978 NM_053024 NM_053042 NM_054013 NM_054027 NM_054030 NM_054033 NM_058178 NM_080551 NM_080737 NM_080738 NM_080881 NM_130465 NM_133180 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133375 NM_133378 NM_133432 NM_133437 NM_138434 NM_138633 NM_138640 NM_138793 NM_138817 NM_139135 NM_139204 NM_139275 NM_144583 NM_144599 NM_144633 NM_144638 NM_144640 NM_144706 NM_144714 NM_144728 NM_144729 NM_144994 NM_145055 NM_145112 NM_145113 NM_145175 NM_145178 NM_145285 NM_145646 NM_145659 NM_145800 NM_145802 NM_145861 NM_147152 NM_147194 NM_148171 NM_148921 NM_148957 NM_152371 NM_152437 NM_152470 NM_152475 NM_152624 NM_152636 NM_152713 NM_152722 NM_152724 NM_152834 NM_153334 NM_153345 NM_153355 NM_153367 NM_153482 NM_153712 NM_153757 NM_171825 NM_172037 NM_172087 NM_172088 NM_172089 NM_172169 NM_172170 NM_172171 NM_172172 NM_172173 NM_172206 NM_172217 NM_172242 NM_172346 NM_173156 NM_173454 NM_173455 NM_173456 NM_173457 NM_173462 NM_173463 NM_173469 NM_173475 NM_173651 NM_173802 NM_173817 NM_174936 NM_174972 NM_178004 NM_178145 NM_178151 NM_178152 NM_178153 NM_178191 NM_178275 NM_178441 NM_178514 NM_178520 NM_178566 NM_178818 NM_181355 NM_181458 NM_181461 NM_181654 NM_181704 NM_181709 NM_181711 NM_181804 NM_181805 NM_181826 NM_181827 NM_181836 NM_182481 NM_182482 NM_182484 NM_182485 NM_182494 NM_182533 NM_182540 NM_182568 NM_182580 NM_182628 NM_182646 NM_182759 NM_182811 NM_182894 NM_182895 NM_182970 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232 NM_194278 NM_194290 NM_194293 NM_194309 NM_194439 NM_198038 NM_198039 NM_198158 NM_198159 NM_198177 NM_198178 NM_198320 NM_198392 NM_198553 NM_198571 NM_198595 NM_198829 NM_198990 NM_199072 NM_199135 NM_199169 NM_199170 NM_199171 NM_199176 NM_199358 NM_199437 NM_199438 NM_199439 NM_199461 NM_201266 NM_201277 NM_201279 NM_201520 NM_201548 NM_201568 NM_201569 NM_201999 NM_203327 NM_203329 NM_203330 NM_203331 NM_206876 NM_206877 NM_207305 NM_207324 NM_207335 NM_207362 NM_207385 NM_207489 NM_207577 NM_207581 NM_212556 NM_213593 XM_027307 XM_038436 XM_041126 XM_048898 XM_049078 XM_113743 XM_113967 XM_117117 XM_117294 XM_166320 XM_171054 XM_172968 XM_208060 XM_290597 XM_370837 XM_370843 XM_370917 XM_370975 XM_371097 XM_371116 XM_371177 XM_371181 XM_373691 XM_374078 XM_374917 XM_374920 XM_375041 XM_375152 XM_375357 XM_375697 XM_375816 XM_375853 XM_376269 XM_376680 XM_376902 XM_378272 XM_378360 XM_378368 XM_378374 XM_378389 XM_378506 XM_378549 XM_378625 XM_378684 XM_378698 XM_378842 XM_378976 XM_379072 XM_379417 XM_379582 XM_379702 XM_379934 XM_495844 XM_495909 XM_496054 XM_496348 XM_496374 XM_496632 XM_496637 XM_496959 XM_496960 XM_496985 XM_498445 XM_498460 XM_498473 XM_498481 XM_498544 XM_498545 XM_498684 XM_498736 XM_498737 XM_499003 XM_499030 XM_499093 XM_499121 XM_499147 XM_499157 XM_499575 XM_499590 XR_000190 XR_000192 XR_000261 XR_000292
Genes with multiple seed matches:
NM_000330 NM_000362 NM_001001703 NM_001024657 NM_001419 NM_003840 NM_003924 NM_004481 NM_005116 NM_005188 NM_005840 NM_006315 NM_012300 NM_015092 NM_015458 NM_016021 NM_018945 NM_020673 NM_024076 NM_033644 NM_033645 NM_152371 NM_153367 NM_181836 NM_201548 NM_203327 NM_207324 XM_166320 XM_499003 XM_499030
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)