VIRsiRNAdb

Predicted off-targets seeds for siRNA "gggugacuggcgggauugcgau" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :757.
Total Genes with multiple seed matches: 32.
Genes with at least one seed match: NM_000061 NM_000077 NM_000140 NM_000231 NM_000244 NM_000245 NM_000248 NM_000325 NM_000332 NM_000337 NM_000345 NM_000346 NM_000415 NM_000511 NM_000516 NM_000610 NM_000617 NM_000640 NM_000682 NM_000795 NM_000810 NM_000842 NM_000870 NM_000885 NM_000902 NM_000916 NM_000926 NM_000997 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001001481 NM_001001482 NM_001001662 NM_001001664 NM_001001732 NM_001001789 NM_001002857 NM_001002858 NM_001003406 NM_001003715 NM_001003716 NM_001003786 NM_001003787 NM_001003788 NM_001004299 NM_001004355 NM_001005303 NM_001005387 NM_001005388 NM_001006605 NM_001007224 NM_001007466 NM_001008223 NM_001008224 NM_001008404 NM_001008537 NM_001008539 NM_001009880 NM_001009921 NM_001010846 NM_001010917 NM_001010982 NM_001011666 NM_001011720 NM_001012393 NM_001012420 NM_001012423 NM_001012515 NM_001012755 NM_001013676 NM_001013681 NM_001013707 NM_001013712 NM_001015045 NM_001017405 NM_001017526 NM_001018089 NM_001018116 NM_001023566 NM_001024401 NM_001024592 NM_001024631 NM_001024660 NM_001025077 NM_001025100 NM_001025194 NM_001025195 NM_001035 NM_001044 NM_001065 NM_001080 NM_001102 NM_001128 NM_001190 NM_001218 NM_001243 NM_001260 NM_001266 NM_001387 NM_001419 NM_001427 NM_001436 NM_001455 NM_001636 NM_001692 NM_001699 NM_001756 NM_001908 NM_001971 NM_002034 NM_002100 NM_002107 NM_002200 NM_002223 NM_002228 NM_002239 NM_002247 NM_002260 NM_002353 NM_002372 NM_002405 NM_002414 NM_002469 NM_002478 NM_002479 NM_002507 NM_002545 NM_002547 NM_002577 NM_002629 NM_002633 NM_002646 NM_002699 NM_002737 NM_002878 NM_002879 NM_002886 NM_002911 NM_002959 NM_003023 NM_003046 NM_003136 NM_003256 NM_003286 NM_003296 NM_003337 NM_003342 NM_003371 NM_003384 NM_003476 NM_003489 NM_003505 NM_003605 NM_003751 NM_003799 NM_003887 NM_003933 NM_004039 NM_004124 NM_004275 NM_004277 NM_004283 NM_004350 NM_004370 NM_004397 NM_004455 NM_004483 NM_004516 NM_004566 NM_004580 NM_004693 NM_004745 NM_004830 NM_004842 NM_004849 NM_004904 NM_004956 NM_004973 NM_005027 NM_005086 NM_005105 NM_005141 NM_005197 NM_005380 NM_005431 NM_005490 NM_005491 NM_005574 NM_005597 NM_005662 NM_005671 NM_005699 NM_005724 NM_005736 NM_005814 NM_005862 NM_005882 NM_005990 NM_006005 NM_006025 NM_006037 NM_006092 NM_006160 NM_006206 NM_006259 NM_006387 NM_006393 NM_006409 NM_006426 NM_006532 NM_006581 NM_006601 NM_006603 NM_006646 NM_006660 NM_006706 NM_006722 NM_006748 NM_006773 NM_006775 NM_006777 NM_006822 NM_006823 NM_006897 NM_006932 NM_006989 NM_006990 NM_006992 NM_007006 NM_007054 NM_007064 NM_007079 NM_007084 NM_007111 NM_007157 NM_007247 NM_007287 NM_007288 NM_007289 NM_007308 NM_007315 NM_007350 NM_009586 NM_012089 NM_012111 NM_012119 NM_012156 NM_012288 NM_012429 NM_013231 NM_013255 NM_013276 NM_013385 NM_013937 NM_014071 NM_014117 NM_014213 NM_014240 NM_014265 NM_014268 NM_014333 NM_014351 NM_014388 NM_014403 NM_014411 NM_014432 NM_014480 NM_014517 NM_014552 NM_014574 NM_014631 NM_014634 NM_014704 NM_014726 NM_014730 NM_014747 NM_014759 NM_014801 NM_014850 NM_014860 NM_014865 NM_014873 NM_014883 NM_014898 NM_014923 NM_014934 NM_014936 NM_014957 NM_015066 NM_015090 NM_015191 NM_015199 NM_015254 NM_015264 NM_015265 NM_015267 NM_015303 NM_015323 NM_015352 NM_015447 NM_015462 NM_015530 NM_015542 NM_015576 NM_015655 NM_015675 NM_015686 NM_015691 NM_015892 NM_016114 NM_016206 NM_016255 NM_016360 NM_016377 NM_016441 NM_016463 NM_016544 NM_016552 NM_016574 NM_016592 NM_016611 NM_016735 NM_017551 NM_017588 NM_017628 NM_017641 NM_017644 NM_017646 NM_017649 NM_017709 NM_017728 NM_017744 NM_017797 NM_017821 NM_017844 NM_017873 NM_017891 NM_017896 NM_017911 NM_017923 NM_017994 NM_018003 NM_018027 NM_018046 NM_018164 NM_018244 NM_018299 NM_018400 NM_018425 NM_018440 NM_018489 NM_018553 NM_018607 NM_018667 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_018940 NM_018982 NM_018993 NM_019009 NM_019089 NM_019106 NM_020193 NM_020245 NM_020338 NM_020378 NM_020435 NM_020453 NM_020701 NM_020713 NM_020748 NM_020762 NM_020773 NM_020792 NM_020870 NM_020933 NM_021020 NM_021079 NM_021096 NM_021143 NM_021154 NM_021203 NM_021218 NM_021253 NM_021255 NM_021260 NM_021570 NM_021572 NM_021813 NM_021913 NM_021945 NM_022054 NM_022102 NM_022452 NM_022459 NM_022552 NM_022748 NM_022756 NM_022781 NM_022817 NM_023930 NM_024111 NM_024309 NM_024335 NM_024490 NM_024492 NM_024512 NM_024554 NM_024611 NM_024683 NM_024711 NM_024757 NM_024830 NM_024938 NM_024979 NM_025187 NM_025232 NM_030621 NM_030639 NM_030651 NM_030781 NM_030895 NM_030930 NM_030960 NM_031216 NM_031304 NM_031305 NM_031411 NM_031452 NM_031849 NM_031857 NM_031860 NM_031886 NM_031939 NM_032016 NM_032023 NM_032145 NM_032239 NM_032255 NM_032358 NM_032368 NM_032390 NM_032476 NM_032579 NM_032611 NM_032643 NM_032800 NM_032801 NM_032826 NM_032856 NM_032932 NM_032974 NM_033118 NM_033260 NM_033274 NM_033331 NM_033393 NM_033510 NM_033513 NM_052821 NM_052896 NM_052898 NM_052947 NM_052953 NM_052996 NM_058172 NM_058179 NM_058195 NM_058197 NM_080425 NM_080426 NM_080546 NM_080550 NM_080599 NM_080605 NM_080645 NM_080664 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_130848 NM_133627 NM_133628 NM_133629 NM_133630 NM_134269 NM_134270 NM_134422 NM_134423 NM_134424 NM_134444 NM_138334 NM_138415 NM_138444 NM_138468 NM_138633 NM_138699 NM_138726 NM_138727 NM_138728 NM_138793 NM_139280 NM_139319 NM_144984 NM_144999 NM_145030 NM_145064 NM_145176 NM_145187 NM_145188 NM_145189 NM_145190 NM_145204 NM_145207 NM_145260 NM_145646 NM_145695 NM_145733 NM_145734 NM_147134 NM_147192 NM_147780 NM_147781 NM_147782 NM_147783 NM_152308 NM_152340 NM_152376 NM_152380 NM_152407 NM_152418 NM_152460 NM_152480 NM_152540 NM_152554 NM_152569 NM_152608 NM_152636 NM_152678 NM_152758 NM_152942 NM_152995 NM_153254 NM_153335 NM_153345 NM_153426 NM_153427 NM_153456 NM_153464 NM_153487 NM_153607 NM_153711 NM_153759 NM_153812 NM_170740 NM_171982 NM_172016 NM_172225 NM_172239 NM_172390 NM_173042 NM_173043 NM_173632 NM_173633 NM_173650 NM_173800 NM_174978 NM_175039 NM_175040 NM_175569 NM_175629 NM_175709 NM_175736 NM_175747 NM_175901 NM_176853 NM_176874 NM_177438 NM_177442 NM_177996 NM_177999 NM_178145 NM_178432 NM_178441 NM_178500 NM_178509 NM_178819 NM_181334 NM_181335 NM_181491 NM_181670 NM_181672 NM_181673 NM_181839 NM_182513 NM_182682 NM_182712 NM_182744 NM_182898 NM_182899 NM_183234 NM_183235 NM_183236 NM_194252 NM_194328 NM_194329 NM_194330 NM_194331 NM_194332 NM_198158 NM_198159 NM_198177 NM_198178 NM_198182 NM_198327 NM_198328 NM_198402 NM_198501 NM_198526 NM_198582 NM_198586 NM_198900 NM_198902 NM_198968 NM_199076 NM_199487 NM_199513 NM_201252 NM_201559 NM_201628 NM_201650 NM_203308 NM_203353 NM_205843 NM_206855 NM_206925 NM_207303 NM_207333 NM_207358 NM_207376 NM_207401 NM_207422 NM_207434 NM_207436 NM_207462 NM_207672 NM_212551 NM_213723 XM_027236 XM_042833 XM_048592 XM_050278 XM_059318 XM_059954 XM_067585 XM_084852 XM_096688 XM_166132 XM_171855 XM_173132 XM_211908 XM_290737 XM_290867 XM_292160 XM_370577 XM_370837 XM_370839 XM_370843 XM_370917 XM_371770 XM_372193 XM_372716 XM_373881 XM_373925 XM_374766 XM_374768 XM_375152 XM_375430 XM_375608 XM_376062 XM_376278 XM_376550 XM_376602 XM_376607 XM_376784 XM_376795 XM_376869 XM_378178 XM_378203 XM_378331 XM_378456 XM_378558 XM_378625 XM_378708 XM_378751 XM_378843 XM_378914 XM_378917 XM_379060 XM_379075 XM_379094 XM_379097 XM_379106 XM_379258 XM_379273 XM_379295 XM_379336 XM_379391 XM_379402 XM_379584 XM_379594 XM_379656 XM_379694 XM_379736 XM_379780 XM_379820 XM_379827 XM_495844 XM_495879 XM_495950 XM_496134 XM_496981 XM_496983 XM_496984 XM_496985 XM_497080 XM_498446 XM_498549 XM_498666 XM_498758 XM_498824 XM_498894 XM_498954 XM_498988 XM_499103 XM_499155 XM_499164 XM_499309 XR_000195 XR_000227	Genes with multiple seed matches: NM_000332 NM_001001789 NM_001011666 NM_001017405 NM_002469 NM_004397 NM_004842 NM_004904 NM_005882 NM_007006 NM_014480 NM_014747 NM_014860 NM_016377 NM_017709 NM_018607 NM_024554 NM_134422 NM_134423 NM_134424 NM_138633 NM_145734 NM_172239 NM_182898 NM_182899 XM_376550 XM_376607 XM_378843 XM_379827 XM_496983 XM_496984 XM_496985

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA