VIRsiRNAdb

Predicted off-targets seeds for siRNA "gacccccggcguaggucgcg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :730.
Total Genes with multiple seed matches: 37.
Genes with at least one seed match: NM_000037 NM_000151 NM_000192 NM_000219 NM_000394 NM_000399 NM_000411 NM_000417 NM_000418 NM_000522 NM_000599 NM_000626 NM_000629 NM_000705 NM_000747 NM_000832 NM_000834 NM_000892 NM_000897 NM_000961 NM_001001502 NM_001001549 NM_001001550 NM_001001555 NM_001001691 NM_001001694 NM_001001716 NM_001001795 NM_001003406 NM_001003694 NM_001004322 NM_001004333 NM_001004345 NM_001004416 NM_001004720 NM_001004722 NM_001005737 NM_001005766 NM_001006946 NM_001007097 NM_001007536 NM_001008744 NM_001009566 NM_001009813 NM_001009877 NM_001009992 NM_001010898 NM_001010911 NM_001012339 NM_001012393 NM_001012426 NM_001012427 NM_001012659 NM_001012711 NM_001012986 NM_001013678 NM_001013695 NM_001013701 NM_001013712 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001015886 NM_001017395 NM_001017430 NM_001017916 NM_001017917 NM_001017918 NM_001017995 NM_001018061 NM_001018062 NM_001018070 NM_001024226 NM_001024227 NM_001024228 NM_001024845 NM_001024933 NM_001025266 NM_001037 NM_001092 NM_001183 NM_001271 NM_001291 NM_001303 NM_001400 NM_001500 NM_001518 NM_001543 NM_001655 NM_001658 NM_001795 NM_001883 NM_001895 NM_001915 NM_001936 NM_002178 NM_002234 NM_002241 NM_002246 NM_002249 NM_002274 NM_002284 NM_002319 NM_002359 NM_002360 NM_002401 NM_002441 NM_002501 NM_002522 NM_002531 NM_002539 NM_002545 NM_002579 NM_002608 NM_002613 NM_002617 NM_002699 NM_002824 NM_002834 NM_002846 NM_002879 NM_002898 NM_002911 NM_002966 NM_002997 NM_003004 NM_003024 NM_003045 NM_003085 NM_003094 NM_003190 NM_003253 NM_003263 NM_003347 NM_003349 NM_003371 NM_003475 NM_003483 NM_003486 NM_003581 NM_003624 NM_003636 NM_003660 NM_003687 NM_003724 NM_003862 NM_003920 NM_003926 NM_003938 NM_003998 NM_004004 NM_004091 NM_004110 NM_004142 NM_004200 NM_004204 NM_004210 NM_004227 NM_004271 NM_004304 NM_004320 NM_004321 NM_004363 NM_004364 NM_004383 NM_004406 NM_004454 NM_004468 NM_004518 NM_004567 NM_004571 NM_004596 NM_004614 NM_004622 NM_004634 NM_004691 NM_004697 NM_004710 NM_004762 NM_004796 NM_004802 NM_004823 NM_004851 NM_004992 NM_005169 NM_005184 NM_005232 NM_005239 NM_005309 NM_005311 NM_005374 NM_005463 NM_005542 NM_005810 NM_005883 NM_005884 NM_005964 NM_006026 NM_006035 NM_006129 NM_006133 NM_006141 NM_006161 NM_006187 NM_006328 NM_006547 NM_006553 NM_006627 NM_006675 NM_006688 NM_006734 NM_006737 NM_006749 NM_006779 NM_006795 NM_006857 NM_006896 NM_006934 NM_006943 NM_006999 NM_007118 NM_007144 NM_007188 NM_007271 NM_007327 NM_007329 NM_007364 NM_012104 NM_012126 NM_012140 NM_012146 NM_012218 NM_012225 NM_012232 NM_012249 NM_012287 NM_012292 NM_012295 NM_012405 NM_012420 NM_012455 NM_013243 NM_013279 NM_013385 NM_013403 NM_013447 NM_014067 NM_014228 NM_014243 NM_014311 NM_014319 NM_014344 NM_014351 NM_014383 NM_014432 NM_014646 NM_014700 NM_014732 NM_014772 NM_014788 NM_014798 NM_014801 NM_014844 NM_014850 NM_014862 NM_014867 NM_014919 NM_014941 NM_014944 NM_014994 NM_015008 NM_015023 NM_015049 NM_015086 NM_015092 NM_015155 NM_015166 NM_015173 NM_015176 NM_015191 NM_015215 NM_015236 NM_015329 NM_015330 NM_015381 NM_015421 NM_015464 NM_015493 NM_015570 NM_015666 NM_015831 NM_015981 NM_015995 NM_016015 NM_016057 NM_016114 NM_016118 NM_016173 NM_016272 NM_016289 NM_016309 NM_016319 NM_016407 NM_016412 NM_016426 NM_016453 NM_016544 NM_016564 NM_016831 NM_016946 NM_017456 NM_017554 NM_017577 NM_017579 NM_017584 NM_017665 NM_017716 NM_017723 NM_017732 NM_017920 NM_017929 NM_017967 NM_017990 NM_018010 NM_018025 NM_018026 NM_018058 NM_018059 NM_018181 NM_018209 NM_018231 NM_018263 NM_018270 NM_018303 NM_018306 NM_018319 NM_018366 NM_018370 NM_018401 NM_018440 NM_018667 NM_018689 NM_018712 NM_018942 NM_018945 NM_018947 NM_019009 NM_019105 NM_019594 NM_020160 NM_020180 NM_020415 NM_020441 NM_020442 NM_020467 NM_020475 NM_020476 NM_020477 NM_020638 NM_020639 NM_020655 NM_020695 NM_020739 NM_020814 NM_020851 NM_020949 NM_020956 NM_020988 NM_020999 NM_021012 NM_021096 NM_021201 NM_021267 NM_021569 NM_021602 NM_021915 NM_021962 NM_021988 NM_022062 NM_022082 NM_022114 NM_022343 NM_022442 NM_022447 NM_022468 NM_022469 NM_022755 NM_022918 NM_023002 NM_023016 NM_023067 NM_023924 NM_024050 NM_024067 NM_024110 NM_024417 NM_024492 NM_024507 NM_024533 NM_024578 NM_024667 NM_024759 NM_024760 NM_024830 NM_024866 NM_024877 NM_024938 NM_025057 NM_025159 NM_025250 NM_025259 NM_030568 NM_030578 NM_030621 NM_030655 NM_030808 NM_030915 NM_031268 NM_031292 NM_031445 NM_031455 NM_031899 NM_032039 NM_032227 NM_032242 NM_032262 NM_032470 NM_032529 NM_032711 NM_032780 NM_032819 NM_032826 NM_032853 NM_032862 NM_032866 NM_032883 NM_032910 NM_032999 NM_033000 NM_033001 NM_033016 NM_033107 NM_033200 NM_033206 NM_033221 NM_033288 NM_033364 NM_033387 NM_033420 NM_033446 NM_033549 NM_033649 NM_052862 NM_052906 NM_052909 NM_052919 NM_052933 NM_052943 NM_053001 NM_054027 NM_058172 NM_058181 NM_080605 NM_080665 NM_080717 NM_080836 NM_080865 NM_130797 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_133443 NM_134422 NM_134423 NM_134424 NM_138298 NM_138435 NM_138457 NM_138473 NM_138477 NM_138802 NM_138970 NM_138971 NM_138972 NM_138973 NM_138998 NM_139024 NM_139028 NM_139057 NM_139202 NM_144501 NM_144502 NM_144503 NM_144504 NM_144601 NM_144632 NM_144664 NM_144692 NM_144781 NM_144991 NM_145167 NM_145239 NM_145276 NM_145285 NM_145310 NM_145313 NM_145347 NM_145348 NM_145663 NM_145818 NM_146388 NM_147202 NM_152235 NM_152253 NM_152272 NM_152287 NM_152330 NM_152337 NM_152362 NM_152371 NM_152722 NM_152828 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_152988 NM_153220 NM_153229 NM_153263 NM_153345 NM_153350 NM_153451 NM_153498 NM_153818 NM_170705 NM_170743 NM_170782 NM_171825 NM_172130 NM_172165 NM_172166 NM_172229 NM_172364 NM_173064 NM_173065 NM_173201 NM_173492 NM_173527 NM_173566 NM_173568 NM_173580 NM_173590 NM_173663 NM_173682 NM_173698 NM_174891 NM_175609 NM_175892 NM_175902 NM_176874 NM_177438 NM_177559 NM_177560 NM_177938 NM_177939 NM_177965 NM_177978 NM_178129 NM_178276 NM_178516 NM_178543 NM_181486 NM_181553 NM_181554 NM_181555 NM_181706 NM_181862 NM_181863 NM_182487 NM_182557 NM_182562 NM_182701 NM_182970 NM_184231 NM_194248 NM_194283 NM_194290 NM_194322 NM_194323 NM_197956 NM_198157 NM_198336 NM_198337 NM_198458 NM_198463 NM_198572 NM_198690 NM_198693 NM_198893 NM_199045 NM_199144 NM_199175 NM_199203 NM_199227 NM_199343 NM_199454 NM_199461 NM_201520 NM_201546 NM_201627 NM_201649 NM_203306 NM_203308 NM_203351 NM_203390 NM_203395 NM_203400 NM_206938 NM_206939 NM_206940 NM_207362 NM_207395 NM_207397 NM_207405 NM_207432 NM_207451 NM_207497 NM_212556 NM_213606 XM_027236 XM_039877 XM_042698 XM_051264 XM_062871 XM_088459 XM_096676 XM_171855 XM_208438 XM_208847 XM_209429 XM_211871 XM_290540 XM_290923 XM_295213 XM_351948 XM_370603 XM_371302 XM_371304 XM_371488 XM_372004 XM_372035 XM_372267 XM_373737 XM_373786 XM_373802 XM_373914 XM_373950 XM_374062 XM_374317 XM_374589 XM_374880 XM_375042 XM_375292 XM_375558 XM_375602 XM_375697 XM_375714 XM_376821 XM_378299 XM_378350 XM_378430 XM_378511 XM_378787 XM_378823 XM_378848 XM_378883 XM_378949 XM_378976 XM_379029 XM_379099 XM_379234 XM_379243 XM_379258 XM_379267 XM_379543 XM_379656 XM_379809 XM_379920 XM_380103 XM_495881 XM_496335 XM_496351 XM_496782 XM_496943 XM_497160 XM_498491 XM_498563 XM_498581 XM_498582 XM_498649 XM_498681 XM_498727 XM_498750 XM_498812 XM_498876 XM_498907 XM_498933 XM_499029 XM_499056 XM_499092 XM_499093 XM_499100 XM_499130 XM_499152 XM_499276 XM_499362 XM_499502 XM_499503 XR_000194 XR_000261 XR_000268 XR_000292	Genes with multiple seed matches: NM_000747 NM_000897 NM_001013678 NM_002613 NM_003004 NM_003045 NM_003926 NM_005883 NM_006999 NM_012146 NM_014646 NM_014788 NM_014919 NM_015155 NM_015329 NM_015995 NM_017723 NM_020180 NM_020639 NM_022468 NM_031268 NM_032262 NM_033221 NM_133332 NM_133333 NM_173527 NM_173566 NM_177978 NM_198690 NM_198693 NM_199227 NM_201520 NM_207362 XM_290923 XM_379656 XM_499093 XR_000194

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA