VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"cgguaaucuuguacgccag"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1434
.
Total Genes with multiple seed matches:
129
.
Genes with at least one seed match:
NM_000022 NM_000041 NM_000048 NM_000066 NM_000131 NM_000239 NM_000246 NM_000292 NM_000294 NM_000299 NM_000301 NM_000334 NM_000401 NM_000411 NM_000455 NM_000476 NM_000478 NM_000497 NM_000565 NM_000578 NM_000599 NM_000616 NM_000623 NM_000629 NM_000633 NM_000641 NM_000664 NM_000693 NM_000745 NM_000746 NM_000747 NM_000817 NM_000823 NM_000838 NM_000849 NM_000851 NM_000861 NM_000887 NM_000934 NM_000962 NM_000964 NM_001001188 NM_001001331 NM_001001549 NM_001001550 NM_001001555 NM_001001563 NM_001001675 NM_001001681 NM_001001685 NM_001001687 NM_001001716 NM_001001789 NM_001002244 NM_001002245 NM_001002246 NM_001002247 NM_001002248 NM_001002249 NM_001002913 NM_001003399 NM_001003665 NM_001003800 NM_001003845 NM_001003941 NM_001004285 NM_001004286 NM_001004347 NM_001005337 NM_001005388 NM_001005404 NM_001005405 NM_001005861 NM_001005920 NM_001006641 NM_001006642 NM_001006643 NM_001007094 NM_001007097 NM_001007139 NM_001007258 NM_001007262 NM_001007466 NM_001008406 NM_001008539 NM_001008544 NM_001008564 NM_001008736 NM_001009553 NM_001009880 NM_001009883 NM_001009913 NM_001009956 NM_001009960 NM_001009996 NM_001010000 NM_001010851 NM_001010866 NM_001010913 NM_001012333 NM_001012334 NM_001012418 NM_001012426 NM_001012427 NM_001012659 NM_001012733 NM_001012734 NM_001013031 NM_001013404 NM_001013640 NM_001013652 NM_001013671 NM_001013680 NM_001013687 NM_001013693 NM_001013710 NM_001013717 NM_001013719 NM_001013726 NM_001013727 NM_001013739 NM_001014445 NM_001017396 NM_001017922 NM_001017995 NM_001018050 NM_001018051 NM_001018052 NM_001018057 NM_001018070 NM_001018111 NM_001024215 NM_001024401 NM_001024608 NM_001024680 NM_001024808 NM_001024809 NM_001024843 NM_001024943 NM_001024944 NM_001024946 NM_001025076 NM_001025077 NM_001025193 NM_001025202 NM_001046 NM_001066 NM_001080 NM_001092 NM_001114 NM_001190 NM_001206 NM_001224 NM_001287 NM_001297 NM_001334 NM_001361 NM_001365 NM_001375 NM_001400 NM_001408 NM_001427 NM_001430 NM_001439 NM_001440 NM_001455 NM_001459 NM_001536 NM_001543 NM_001654 NM_001655 NM_001683 NM_001715 NM_001718 NM_001737 NM_001759 NM_001795 NM_001816 NM_001846 NM_001883 NM_001894 NM_001908 NM_001918 NM_001923 NM_001925 NM_001936 NM_001989 NM_001991 NM_001993 NM_002017 NM_002025 NM_002028 NM_002061 NM_002070 NM_002076 NM_002086 NM_002096 NM_002223 NM_002293 NM_002332 NM_002357 NM_002391 NM_002398 NM_002401 NM_002406 NM_002481 NM_002499 NM_002500 NM_002501 NM_002505 NM_002562 NM_002564 NM_002581 NM_002586 NM_002591 NM_002613 NM_002617 NM_002622 NM_002646 NM_002650 NM_002705 NM_002712 NM_002719 NM_002814 NM_002827 NM_002832 NM_002853 NM_002883 NM_002885 NM_002918 NM_002929 NM_002938 NM_002941 NM_002957 NM_002958 NM_002972 NM_002996 NM_003029 NM_003030 NM_003036 NM_003044 NM_003045 NM_003046 NM_003084 NM_003107 NM_003120 NM_003124 NM_003174 NM_003190 NM_003192 NM_003255 NM_003274 NM_003289 NM_003304 NM_003343 NM_003347 NM_003359 NM_003382 NM_003417 NM_003421 NM_003430 NM_003498 NM_003565 NM_003592 NM_003622 NM_003629 NM_003644 NM_003683 NM_003709 NM_003751 NM_003759 NM_003764 NM_003775 NM_003799 NM_003800 NM_003820 NM_003855 NM_003897 NM_003901 NM_003909 NM_003910 NM_003926 NM_003938 NM_004041 NM_004058 NM_004079 NM_004090 NM_004117 NM_004145 NM_004155 NM_004274 NM_004286 NM_004379 NM_004383 NM_004393 NM_004464 NM_004486 NM_004513 NM_004518 NM_004544 NM_004577 NM_004618 NM_004624 NM_004646 NM_004696 NM_004703 NM_004709 NM_004715 NM_004729 NM_004730 NM_004739 NM_004798 NM_004805 NM_004821 NM_004845 NM_004895 NM_004910 NM_004926 NM_004956 NM_004992 NM_005049 NM_005055 NM_005076 NM_005116 NM_005137 NM_005144 NM_005177 NM_005197 NM_005216 NM_005224 NM_005226 NM_005253 NM_005297 NM_005304 NM_005311 NM_005312 NM_005316 NM_005338 NM_005354 NM_005357 NM_005370 NM_005380 NM_005397 NM_005413 NM_005431 NM_005436 NM_005446 NM_005455 NM_005461 NM_005472 NM_005477 NM_005479 NM_005503 NM_005516 NM_005540 NM_005576 NM_005581 NM_005584 NM_005597 NM_005629 NM_005652 NM_005665 NM_005678 NM_005712 NM_005730 NM_005737 NM_005740 NM_005766 NM_005768 NM_005779 NM_005805 NM_005819 NM_005858 NM_005860 NM_005914 NM_005920 NM_005943 NM_005959 NM_005966 NM_005986 NM_006011 NM_006017 NM_006037 NM_006045 NM_006056 NM_006057 NM_006060 NM_006097 NM_006122 NM_006162 NM_006178 NM_006245 NM_006277 NM_006293 NM_006312 NM_006315 NM_006336 NM_006409 NM_006454 NM_006499 NM_006505 NM_006510 NM_006540 NM_006561 NM_006565 NM_006613 NM_006620 NM_006640 NM_006648 NM_006651 NM_006693 NM_006732 NM_006752 NM_006753 NM_006766 NM_006774 NM_006839 NM_006884 NM_007028 NM_007030 NM_007047 NM_007048 NM_007073 NM_007077 NM_007084 NM_007108 NM_007159 NM_007163 NM_007213 NM_007224 NM_007235 NM_007238 NM_007256 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_007321 NM_007345 NM_012095 NM_012096 NM_012099 NM_012138 NM_012174 NM_012193 NM_012218 NM_012219 NM_012244 NM_012260 NM_012281 NM_012288 NM_012295 NM_012306 NM_012308 NM_012398 NM_012399 NM_012405 NM_012408 NM_012434 NM_012479 NM_013253 NM_013261 NM_013279 NM_013282 NM_013286 NM_013289 NM_013336 NM_013359 NM_013374 NM_013402 NM_013451 NM_013960 NM_014005 NM_014012 NM_014045 NM_014089 NM_014112 NM_014154 NM_014188 NM_014207 NM_014226 NM_014235 NM_014280 NM_014285 NM_014293 NM_014306 NM_014322 NM_014326 NM_014337 NM_014369 NM_014390 NM_014405 NM_014424 NM_014442 NM_014484 NM_014506 NM_014553 NM_014571 NM_014604 NM_014636 NM_014644 NM_014669 NM_014671 NM_014690 NM_014712 NM_014732 NM_014739 NM_014742 NM_014761 NM_014770 NM_014772 NM_014792 NM_014797 NM_014798 NM_014802 NM_014867 NM_014898 NM_014906 NM_014992 NM_014994 NM_014999 NM_015005 NM_015041 NM_015045 NM_015064 NM_015078 NM_015088 NM_015090 NM_015094 NM_015101 NM_015133 NM_015137 NM_015144 NM_015162 NM_015199 NM_015224 NM_015226 NM_015250 NM_015259 NM_015264 NM_015296 NM_015310 NM_015315 NM_015330 NM_015345 NM_015375 NM_015379 NM_015409 NM_015453 NM_015455 NM_015518 NM_015564 NM_015570 NM_015576 NM_015602 NM_015666 NM_015691 NM_015695 NM_015881 NM_015981 NM_016018 NM_016056 NM_016089 NM_016118 NM_016147 NM_016173 NM_016263 NM_016269 NM_016270 NM_016390 NM_016412 NM_016476 NM_016532 NM_016546 NM_016562 NM_016563 NM_016575 NM_016609 NM_016611 NM_016929 NM_017415 NM_017420 NM_017438 NM_017444 NM_017518 NM_017555 NM_017569 NM_017575 NM_017599 NM_017621 NM_017638 NM_017643 NM_017651 NM_017668 NM_017684 NM_017723 NM_017740 NM_017769 NM_017857 NM_017891 NM_017925 NM_017927 NM_017931 NM_017968 NM_017999 NM_018013 NM_018023 NM_018026 NM_018027 NM_018068 NM_018073 NM_018096 NM_018097 NM_018114 NM_018129 NM_018138 NM_018209 NM_018268 NM_018276 NM_018277 NM_018320 NM_018357 NM_018403 NM_018438 NM_018484 NM_018538 NM_018555 NM_018579 NM_018646 NM_018715 NM_018717 NM_018941 NM_018945 NM_019014 NM_019040 NM_019069 NM_019089 NM_019595 NM_019616 NM_019845 NM_020038 NM_020130 NM_020132 NM_020133 NM_020165 NM_020198 NM_020211 NM_020215 NM_020245 NM_020251 NM_020312 NM_020326 NM_020338 NM_020372 NM_020381 NM_020407 NM_020412 NM_020441 NM_020444 NM_020451 NM_020465 NM_020693 NM_020702 NM_020708 NM_020714 NM_020747 NM_020777 NM_020795 NM_020821 NM_020844 NM_020886 NM_020925 NM_020935 NM_020979 NM_020988 NM_020993 NM_021020 NM_021030 NM_021038 NM_021064 NM_021088 NM_021090 NM_021116 NM_021117 NM_021168 NM_021180 NM_021189 NM_021198 NM_021202 NM_021215 NM_021216 NM_021258 NM_021625 NM_021638 NM_021705 NM_021734 NM_021738 NM_021806 NM_021820 NM_021915 NM_021916 NM_021943 NM_021949 NM_021962 NM_022068 NM_022074 NM_022082 NM_022105 NM_022112 NM_022114 NM_022148 NM_022437 NM_022444 NM_022733 NM_022758 NM_022766 NM_022910 NM_023107 NM_023108 NM_024015 NM_024019 NM_024080 NM_024081 NM_024294 NM_024310 NM_024345 NM_024492 NM_024510 NM_024527 NM_024536 NM_024585 NM_024589 NM_024605 NM_024627 NM_024647 NM_024653 NM_024656 NM_024693 NM_024705 NM_024719 NM_024726 NM_024761 NM_024771 NM_024773 NM_024784 NM_024793 NM_024806 NM_024828 NM_024832 NM_024845 NM_024855 NM_024859 NM_024865 NM_024866 NM_024902 NM_024919 NM_024929 NM_024935 NM_024943 NM_024959 NM_025002 NM_025042 NM_025049 NM_025072 NM_025078 NM_025079 NM_025090 NM_025168 NM_025179 NM_025193 NM_025196 NM_025219 NM_025230 NM_025245 NM_025250 NM_030569 NM_030574 NM_030621 NM_030665 NM_030780 NM_030781 NM_030802 NM_030806 NM_030918 NM_030949 NM_030950 NM_030966 NM_031268 NM_031434 NM_031445 NM_031461 NM_031474 NM_031478 NM_031490 NM_031498 NM_031904 NM_031994 NM_032019 NM_032030 NM_032039 NM_032045 NM_032052 NM_032105 NM_032153 NM_032160 NM_032175 NM_032179 NM_032242 NM_032267 NM_032271 NM_032286 NM_032289 NM_032298 NM_032307 NM_032329 NM_032357 NM_032415 NM_032432 NM_032493 NM_032501 NM_032529 NM_032534 NM_032558 NM_032620 NM_032645 NM_032706 NM_032728 NM_032737 NM_032788 NM_032800 NM_032801 NM_032817 NM_032831 NM_032837 NM_032927 NM_032933 NM_032957 NM_032958 NM_032959 NM_032982 NM_032983 NM_032984 NM_032988 NM_032994 NM_033064 NM_033115 NM_033143 NM_033170 NM_033171 NM_033172 NM_033173 NM_033200 NM_033271 NM_033312 NM_033332 NM_033343 NM_033355 NM_033356 NM_033357 NM_033392 NM_033405 NM_033421 NM_033446 NM_033450 NM_033453 NM_033551 NM_033626 NM_048368 NM_052813 NM_052815 NM_052816 NM_052828 NM_052832 NM_052839 NM_052847 NM_052892 NM_052896 NM_052901 NM_052909 NM_052918 NM_052941 NM_052949 NM_052996 NM_053029 NM_054016 NM_054027 NM_054114 NM_058004 NM_058167 NM_058175 NM_058178 NM_058180 NM_078483 NM_078487 NM_078628 NM_080542 NM_080543 NM_080588 NM_080589 NM_080590 NM_080591 NM_080616 NM_080627 NM_080679 NM_080680 NM_080681 NM_080796 NM_080797 NM_130468 NM_130766 NM_130797 NM_130807 NM_130844 NM_133279 NM_133280 NM_133282 NM_133334 NM_133337 NM_133377 NM_133459 NM_133490 NM_133496 NM_133631 NM_133632 NM_133633 NM_134269 NM_134422 NM_134423 NM_134424 NM_134434 NM_134442 NM_138278 NM_138298 NM_138338 NM_138350 NM_138368 NM_138369 NM_138400 NM_138415 NM_138434 NM_138435 NM_138457 NM_138494 NM_138568 NM_138774 NM_138785 NM_138799 NM_138814 NM_139068 NM_139069 NM_139164 NM_139179 NM_139242 NM_139320 NM_144577 NM_144579 NM_144599 NM_144607 NM_144613 NM_144692 NM_144967 NM_144999 NM_145060 NM_145113 NM_145174 NM_145175 NM_145234 NM_145309 NM_145313 NM_145349 NM_145351 NM_145693 NM_145699 NM_145727 NM_145896 NM_147128 NM_147147 NM_147204 NM_147780 NM_147781 NM_147782 NM_147783 NM_148842 NM_148903 NM_148911 NM_148962 NM_152133 NM_152221 NM_152235 NM_152253 NM_152335 NM_152361 NM_152395 NM_152404 NM_152458 NM_152470 NM_152483 NM_152496 NM_152497 NM_152509 NM_152544 NM_152551 NM_152554 NM_152594 NM_152665 NM_152681 NM_152686 NM_152690 NM_152693 NM_152701 NM_152760 NM_152840 NM_152842 NM_152870 NM_152999 NM_153020 NM_153027 NM_153044 NM_153050 NM_153051 NM_153191 NM_153229 NM_153239 NM_153337 NM_153348 NM_153350 NM_153369 NM_153371 NM_153375 NM_153690 NM_153691 NM_153809 NM_153818 NM_170705 NM_170740 NM_170750 NM_171825 NM_172217 NM_172239 NM_172367 NM_172387 NM_172388 NM_172389 NM_173199 NM_173470 NM_173476 NM_173492 NM_173499 NM_173511 NM_173528 NM_173536 NM_173576 NM_173581 NM_173582 NM_173599 NM_173618 NM_173652 NM_173664 NM_173795 NM_173802 NM_173803 NM_173851 NM_175053 NM_175058 NM_175609 NM_175630 NM_175901 NM_175902 NM_175908 NM_175923 NM_176071 NM_176072 NM_176811 NM_176815 NM_176871 NM_177427 NM_177438 NM_177539 NM_177963 NM_177978 NM_177979 NM_178037 NM_178038 NM_178135 NM_178225 NM_178226 NM_178314 NM_178448 NM_178536 NM_178586 NM_178835 NM_178836 NM_178860 NM_180976 NM_180977 NM_181336 NM_181357 NM_181359 NM_181430 NM_181431 NM_181489 NM_181491 NM_181493 NM_181526 NM_181714 NM_181724 NM_181727 NM_181877 NM_182477 NM_182501 NM_182513 NM_182527 NM_182557 NM_182577 NM_182607 NM_182621 NM_182633 NM_182644 NM_182661 NM_182688 NM_182712 NM_182728 NM_182740 NM_182744 NM_182746 NM_182832 NM_182909 NM_182974 NM_183047 NM_183048 NM_183059 NM_183373 NM_183395 NM_183397 NM_183414 NM_194252 NM_194294 NM_194315 NM_194316 NM_194428 NM_194452 NM_194453 NM_194457 NM_194458 NM_197941 NM_198154 NM_198157 NM_198173 NM_198174 NM_198207 NM_198318 NM_198319 NM_198402 NM_198442 NM_198465 NM_198527 NM_198531 NM_198532 NM_198533 NM_198542 NM_198557 NM_198562 NM_198580 NM_198582 NM_198595 NM_198679 NM_198686 NM_198704 NM_198705 NM_198706 NM_198707 NM_198708 NM_198835 NM_198847 NM_198887 NM_198935 NM_198938 NM_198939 NM_198940 NM_199071 NM_199454 NM_199461 NM_199462 NM_201397 NM_201399 NM_201432 NM_201433 NM_201520 NM_201543 NM_201544 NM_201545 NM_201559 NM_203305 NM_203327 NM_203351 NM_203395 NM_203445 NM_203446 NM_203451 NM_203506 NM_205843 NM_206808 NM_206835 NM_206887 NM_206893 NM_206909 NM_206910 NM_206911 NM_206926 NM_207012 NM_207106 NM_207107 NM_207122 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207313 NM_207335 NM_207351 NM_207370 NM_207381 NM_207388 NM_207389 NM_207398 NM_207401 NM_207419 NM_207439 NM_207449 NM_207451 NM_207463 NM_207473 NM_207478 NM_207481 NM_207483 NM_207499 NM_207577 NM_213598 NM_213599 NM_213612 NM_213654 XM_027307 XM_029962 XM_034872 XM_035497 XM_041221 XM_042698 XM_044062 XM_047550 XM_047554 XM_058720 XM_059318 XM_065166 XM_096733 XM_097351 XM_114000 XM_114618 XM_166132 XM_166140 XM_167152 XM_172801 XM_173119 XM_208522 XM_208545 XM_209500 XM_211764 XM_211896 XM_290597 XM_294675 XM_350880 XM_351854 XM_370845 XM_370849 XM_370878 XM_370928 XM_370932 XM_370944 XM_371074 XM_371797 XM_371801 XM_372039 XM_372774 XM_373562 XM_373636 XM_373659 XM_373695 XM_373926 XM_373967 XM_374141 XM_374766 XM_374781 XM_375174 XM_375183 XM_375292 XM_375373 XM_375430 XM_375558 XM_375602 XM_375646 XM_375669 XM_376257 XM_376303 XM_376386 XM_376412 XM_376558 XM_376586 XM_376631 XM_376677 XM_376680 XM_376684 XM_376784 XM_377002 XM_377076 XM_378299 XM_378329 XM_378349 XM_378399 XM_378491 XM_378529 XM_378553 XM_378623 XM_378625 XM_378631 XM_378678 XM_378742 XM_378750 XM_378825 XM_378852 XM_378855 XM_378860 XM_378883 XM_378886 XM_378914 XM_379023 XM_379041 XM_379075 XM_379135 XM_379136 XM_379235 XM_379247 XM_379322 XM_379363 XM_379371 XM_379381 XM_379391 XM_379398 XM_379452 XM_379512 XM_379595 XM_379702 XM_379704 XM_379798 XM_379866 XM_379931 XM_379934 XM_379940 XM_380103 XM_380135 XM_495888 XM_495918 XM_495937 XM_496231 XM_496328 XM_496351 XM_496613 XM_496766 XM_496889 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497036 XM_498424 XM_498427 XM_498445 XM_498457 XM_498490 XM_498500 XM_498510 XM_498555 XM_498666 XM_498667 XM_498689 XM_498735 XM_498817 XM_498825 XM_498834 XM_498835 XM_498841 XM_498852 XM_498883 XM_498889 XM_498910 XM_498912 XM_498932 XM_498961 XM_498962 XM_498986 XM_498991 XM_498998 XM_499005 XM_499029 XM_499041 XM_499047 XM_499065 XM_499082 XM_499139 XM_499142 XM_499146 XM_499147 XM_499312 XM_499362 XM_499515 XM_499536 XM_499554 XM_499575 XM_499586 XR_000182 XR_000184 XR_000194 XR_000268 XR_000294
Genes with multiple seed matches:
NM_000294 NM_000497 NM_000641 NM_000664 NM_000964 NM_001001563 NM_001001675 NM_001001789 NM_001005388 NM_001005404 NM_001005920 NM_001007097 NM_001009880 NM_001009996 NM_001012659 NM_001013710 NM_001024809 NM_001024843 NM_001224 NM_001655 NM_001883 NM_001908 NM_002293 NM_002622 NM_002957 NM_002996 NM_003190 NM_003274 NM_003498 NM_003622 NM_003820 NM_004518 NM_004696 NM_004895 NM_004992 NM_006037 NM_006060 NM_006122 NM_006774 NM_007345 NM_012174 NM_012288 NM_012398 NM_014235 NM_014293 NM_014369 NM_014405 NM_014636 NM_014770 NM_015088 NM_015090 NM_015094 NM_015264 NM_015330 NM_015666 NM_015691 NM_015981 NM_017891 NM_018114 NM_018945 NM_020777 NM_021168 NM_021180 NM_021638 NM_022114 NM_022766 NM_024589 NM_024866 NM_025079 NM_030806 NM_031490 NM_032160 NM_032179 NM_032271 NM_032432 NM_032728 NM_032737 NM_032958 NM_032959 NM_032982 NM_032983 NM_032984 NM_052909 NM_058175 NM_058178 NM_134434 NM_138298 NM_138368 NM_138435 NM_145727 NM_147780 NM_147781 NM_147782 NM_147783 NM_148903 NM_152253 NM_152842 NM_153348 NM_171825 NM_173581 NM_175058 NM_177427 NM_178225 NM_178226 NM_182740 NM_183395 NM_183414 NM_198173 NM_198174 NM_198532 NM_198542 NM_198595 NM_198835 NM_199454 NM_201397 NM_206835 NM_206887 NM_207439 XM_370928 XM_375174 XM_375183 XM_375292 XM_379452 XM_496351 XM_498666 XM_499005 XM_499065 XM_499515 XR_000194
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)