VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"uucuuucccuucucucguc"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1387
.
Total Genes with multiple seed matches:
93
.
Genes with at least one seed match:
NM_000065 NM_000081 NM_000140 NM_000161 NM_000175 NM_000188 NM_000189 NM_000230 NM_000264 NM_000271 NM_000283 NM_000296 NM_000298 NM_000307 NM_000322 NM_000332 NM_000334 NM_000335 NM_000343 NM_000351 NM_000353 NM_000356 NM_000391 NM_000429 NM_000430 NM_000460 NM_000462 NM_000617 NM_000629 NM_000634 NM_000664 NM_000671 NM_000692 NM_000719 NM_000723 NM_000732 NM_000743 NM_000744 NM_000759 NM_000775 NM_000814 NM_000826 NM_000841 NM_000872 NM_000877 NM_000983 NM_000991 NM_001001668 NM_001001694 NM_001001700 NM_001001790 NM_001001795 NM_001001928 NM_001001929 NM_001001930 NM_001001974 NM_001002257 NM_001002762 NM_001002799 NM_001002800 NM_001002838 NM_001002861 NM_001003406 NM_001003407 NM_001003408 NM_001003665 NM_001003688 NM_001003689 NM_001003800 NM_001003891 NM_001004056 NM_001004057 NM_001004197 NM_001004317 NM_001004342 NM_001004348 NM_001004441 NM_001005372 NM_001005388 NM_001005389 NM_001006604 NM_001006638 NM_001006932 NM_001006933 NM_001006938 NM_001007024 NM_001007025 NM_001007033 NM_001007097 NM_001007225 NM_001007278 NM_001007535 NM_001008 NM_001008220 NM_001008222 NM_001008223 NM_001008388 NM_001008390 NM_001008407 NM_001008408 NM_001008493 NM_001008539 NM_001008540 NM_001008656 NM_001008895 NM_001009905 NM_001009944 NM_001010846 NM_001010864 NM_001010911 NM_001010980 NM_001011554 NM_001011722 NM_001012339 NM_001012515 NM_001012651 NM_001012761 NM_001012968 NM_001012987 NM_001013 NM_001013031 NM_001013629 NM_001013673 NM_001013676 NM_001013679 NM_001013713 NM_001013738 NM_001013839 NM_001014283 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001015048 NM_001015049 NM_001017392 NM_001017417 NM_001017435 NM_001017436 NM_001017438 NM_001017523 NM_001017975 NM_001018050 NM_001018051 NM_001018052 NM_001018065 NM_001018066 NM_001018072 NM_001018104 NM_001024218 NM_001024596 NM_001024948 NM_001024959 NM_001024960 NM_001025076 NM_001025077 NM_001025100 NM_001095 NM_001116 NM_001129 NM_001130 NM_001163 NM_001167 NM_001190 NM_001248 NM_001330 NM_001386 NM_001390 NM_001408 NM_001419 NM_001420 NM_001430 NM_001447 NM_001449 NM_001490 NM_001495 NM_001498 NM_001499 NM_001543 NM_001608 NM_001634 NM_001650 NM_001711 NM_001759 NM_001835 NM_001848 NM_001858 NM_001860 NM_001883 NM_001895 NM_001904 NM_001925 NM_001952 NM_001978 NM_002024 NM_002025 NM_002070 NM_002073 NM_002074 NM_002077 NM_002119 NM_002196 NM_002198 NM_002221 NM_002222 NM_002254 NM_002271 NM_002313 NM_002355 NM_002359 NM_002375 NM_002382 NM_002387 NM_002515 NM_002531 NM_002565 NM_002581 NM_002599 NM_002649 NM_002655 NM_002662 NM_002694 NM_002705 NM_002718 NM_002719 NM_002730 NM_002758 NM_002760 NM_002827 NM_002866 NM_002869 NM_002874 NM_002883 NM_002895 NM_002928 NM_002959 NM_002967 NM_002969 NM_002970 NM_003004 NM_003009 NM_003010 NM_003023 NM_003045 NM_003046 NM_003068 NM_003107 NM_003108 NM_003131 NM_003144 NM_003162 NM_003165 NM_003170 NM_003201 NM_003222 NM_003234 NM_003309 NM_003330 NM_003348 NM_003379 NM_003392 NM_003403 NM_003404 NM_003425 NM_003467 NM_003473 NM_003476 NM_003478 NM_003481 NM_003484 NM_003496 NM_003506 NM_003576 NM_003589 NM_003620 NM_003648 NM_003654 NM_003660 NM_003663 NM_003681 NM_003724 NM_003734 NM_003778 NM_003792 NM_003799 NM_003803 NM_003818 NM_003822 NM_003824 NM_003829 NM_003842 NM_003869 NM_003898 NM_003924 NM_003930 NM_003933 NM_003941 NM_003953 NM_003957 NM_004028 NM_004035 NM_004041 NM_004055 NM_004091 NM_004096 NM_004109 NM_004171 NM_004197 NM_004198 NM_004207 NM_004209 NM_004224 NM_004265 NM_004271 NM_004273 NM_004290 NM_004302 NM_004308 NM_004309 NM_004319 NM_004339 NM_004354 NM_004386 NM_004394 NM_004395 NM_004397 NM_004423 NM_004430 NM_004440 NM_004462 NM_004472 NM_004494 NM_004518 NM_004523 NM_004535 NM_004566 NM_004607 NM_004622 NM_004629 NM_004630 NM_004651 NM_004663 NM_004686 NM_004700 NM_004705 NM_004721 NM_004729 NM_004736 NM_004744 NM_004745 NM_004747 NM_004772 NM_004797 NM_004811 NM_004834 NM_004845 NM_004871 NM_004873 NM_004892 NM_004914 NM_004915 NM_004918 NM_004943 NM_004966 NM_004975 NM_004978 NM_004985 NM_004996 NM_005036 NM_005044 NM_005046 NM_005054 NM_005059 NM_005110 NM_005169 NM_005188 NM_005202 NM_005207 NM_005224 NM_005257 NM_005276 NM_005307 NM_005338 NM_005341 NM_005342 NM_005354 NM_005368 NM_005373 NM_005374 NM_005376 NM_005407 NM_005436 NM_005458 NM_005479 NM_005496 NM_005539 NM_005540 NM_005578 NM_005650 NM_005668 NM_005682 NM_005718 NM_005737 NM_005798 NM_005806 NM_005816 NM_005828 NM_005863 NM_005874 NM_005881 NM_005884 NM_005895 NM_005900 NM_005904 NM_005931 NM_006011 NM_006033 NM_006038 NM_006043 NM_006060 NM_006134 NM_006139 NM_006145 NM_006162 NM_006178 NM_006184 NM_006207 NM_006211 NM_006237 NM_006246 NM_006257 NM_006259 NM_006291 NM_006315 NM_006344 NM_006359 NM_006373 NM_006378 NM_006393 NM_006420 NM_006464 NM_006472 NM_006489 NM_006548 NM_006561 NM_006593 NM_006599 NM_006626 NM_006650 NM_006651 NM_006697 NM_006720 NM_006736 NM_006738 NM_006766 NM_006772 NM_006804 NM_006832 NM_006868 NM_006888 NM_006895 NM_006925 NM_006931 NM_006936 NM_006943 NM_007021 NM_007052 NM_007065 NM_007073 NM_007098 NM_007147 NM_007157 NM_007176 NM_007178 NM_007200 NM_007229 NM_007249 NM_007260 NM_007284 NM_007292 NM_007306 NM_007345 NM_007348 NM_007368 NM_009588 NM_009589 NM_012068 NM_012073 NM_012075 NM_012098 NM_012101 NM_012119 NM_012146 NM_012156 NM_012157 NM_012161 NM_012186 NM_012215 NM_012231 NM_012279 NM_012315 NM_012324 NM_012434 NM_012464 NM_012465 NM_012469 NM_012479 NM_013232 NM_013233 NM_013252 NM_013283 NM_013286 NM_013300 NM_013325 NM_013345 NM_013366 NM_013433 NM_013955 NM_013960 NM_014023 NM_014048 NM_014057 NM_014067 NM_014235 NM_014299 NM_014384 NM_014388 NM_014390 NM_014423 NM_014442 NM_014456 NM_014506 NM_014517 NM_014520 NM_014521 NM_014570 NM_014601 NM_014613 NM_014614 NM_014616 NM_014629 NM_014630 NM_014633 NM_014646 NM_014647 NM_014655 NM_014665 NM_014686 NM_014702 NM_014704 NM_014717 NM_014726 NM_014728 NM_014732 NM_014734 NM_014747 NM_014751 NM_014766 NM_014767 NM_014772 NM_014777 NM_014788 NM_014797 NM_014820 NM_014835 NM_014844 NM_014850 NM_014854 NM_014874 NM_014918 NM_014924 NM_014957 NM_014962 NM_014964 NM_014969 NM_014974 NM_015011 NM_015025 NM_015033 NM_015035 NM_015053 NM_015055 NM_015074 NM_015090 NM_015092 NM_015149 NM_015191 NM_015202 NM_015205 NM_015219 NM_015225 NM_015227 NM_015233 NM_015245 NM_015250 NM_015261 NM_015266 NM_015271 NM_015288 NM_015314 NM_015349 NM_015352 NM_015353 NM_015399 NM_015431 NM_015447 NM_015456 NM_015458 NM_015510 NM_015534 NM_015564 NM_015569 NM_015570 NM_015575 NM_015627 NM_015635 NM_015669 NM_015678 NM_015713 NM_015831 NM_015889 NM_015898 NM_015911 NM_015975 NM_015995 NM_016022 NM_016032 NM_016145 NM_016169 NM_016205 NM_016206 NM_016248 NM_016255 NM_016322 NM_016331 NM_016332 NM_016353 NM_016376 NM_016431 NM_016499 NM_016511 NM_016529 NM_016539 NM_016575 NM_016586 NM_016611 NM_016652 NM_016818 NM_016930 NM_017409 NM_017415 NM_017424 NM_017450 NM_017548 NM_017550 NM_017590 NM_017626 NM_017655 NM_017705 NM_017737 NM_017742 NM_017760 NM_017761 NM_017780 NM_017787 NM_017822 NM_017849 NM_017891 NM_017945 NM_017974 NM_017990 NM_017998 NM_017999 NM_018015 NM_018018 NM_018125 NM_018141 NM_018153 NM_018172 NM_018182 NM_018185 NM_018209 NM_018211 NM_018212 NM_018215 NM_018222 NM_018388 NM_018389 NM_018390 NM_018396 NM_018400 NM_018409 NM_018425 NM_018439 NM_018472 NM_018648 NM_018660 NM_018697 NM_018708 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_018936 NM_018945 NM_018999 NM_019001 NM_019008 NM_019009 NM_019081 NM_019086 NM_019102 NM_019555 NM_019605 NM_019610 NM_019846 NM_019859 NM_019860 NM_019862 NM_019898 NM_019899 NM_019900 NM_019901 NM_019902 NM_020039 NM_020121 NM_020132 NM_020150 NM_020162 NM_020182 NM_020208 NM_020223 NM_020237 NM_020251 NM_020335 NM_020348 NM_020353 NM_020400 NM_020416 NM_020422 NM_020429 NM_020444 NM_020448 NM_020452 NM_020456 NM_020474 NM_020546 NM_020639 NM_020655 NM_020661 NM_020673 NM_020702 NM_020710 NM_020717 NM_020748 NM_020773 NM_020774 NM_020778 NM_020791 NM_020804 NM_020806 NM_020809 NM_020820 NM_020830 NM_020844 NM_020886 NM_020894 NM_020922 NM_020940 NM_020957 NM_020962 NM_020971 NM_021020 NM_021095 NM_021096 NM_021116 NM_021135 NM_021140 NM_021185 NM_021239 NM_021571 NM_021622 NM_021798 NM_021813 NM_021912 NM_021943 NM_021945 NM_021961 NM_022063 NM_022073 NM_022112 NM_022153 NM_022169 NM_022336 NM_022405 NM_022483 NM_022484 NM_022491 NM_022735 NM_022752 NM_022755 NM_022766 NM_022767 NM_022818 NM_022820 NM_022821 NM_022829 NM_022898 NM_022915 NM_023007 NM_023018 NM_023923 NM_024016 NM_024039 NM_024043 NM_024046 NM_024090 NM_024096 NM_024100 NM_024325 NM_024327 NM_024416 NM_024544 NM_024569 NM_024585 NM_024587 NM_024591 NM_024616 NM_024630 NM_024639 NM_024643 NM_024653 NM_024656 NM_024657 NM_024671 NM_024701 NM_024704 NM_024709 NM_024713 NM_024738 NM_024757 NM_024761 NM_024769 NM_024771 NM_024773 NM_024819 NM_024847 NM_024854 NM_024915 NM_024917 NM_025010 NM_025054 NM_025063 NM_025090 NM_025160 NM_025161 NM_025188 NM_025195 NM_025213 NM_025219 NM_025224 NM_025236 NM_025250 NM_030570 NM_030626 NM_030629 NM_030643 NM_030665 NM_030766 NM_030787 NM_030796 NM_030803 NM_030884 NM_030934 NM_031244 NM_031287 NM_031411 NM_031437 NM_031462 NM_031476 NM_031477 NM_031849 NM_031857 NM_031860 NM_031890 NM_031891 NM_031904 NM_031949 NM_031988 NM_032045 NM_032109 NM_032124 NM_032189 NM_032214 NM_032227 NM_032281 NM_032311 NM_032372 NM_032432 NM_032454 NM_032456 NM_032493 NM_032509 NM_032592 NM_032603 NM_032680 NM_032682 NM_032710 NM_032711 NM_032823 NM_032833 NM_032853 NM_032916 NM_032926 NM_032932 NM_032933 NM_032940 NM_032975 NM_032980 NM_033014 NM_033056 NM_033083 NM_033129 NM_033131 NM_033141 NM_033211 NM_033221 NM_033226 NM_033285 NM_033315 NM_033360 NM_033496 NM_033497 NM_033498 NM_033500 NM_033514 NM_033535 NM_033550 NM_033626 NM_052811 NM_052890 NM_052910 NM_052917 NM_052918 NM_052978 NM_057095 NM_057096 NM_057175 NM_078471 NM_080431 NM_080612 NM_080621 NM_080738 NM_080836 NM_080870 NM_080881 NM_130446 NM_130474 NM_130475 NM_130786 NM_130838 NM_130839 NM_133334 NM_133459 NM_133460 NM_133463 NM_133486 NM_134264 NM_134441 NM_138300 NM_138338 NM_138391 NM_138395 NM_138444 NM_138492 NM_138576 NM_138713 NM_138714 NM_138722 NM_138723 NM_139124 NM_139176 NM_139277 NM_139323 NM_144498 NM_144586 NM_144606 NM_144669 NM_144767 NM_144996 NM_145112 NM_145113 NM_145115 NM_145117 NM_145185 NM_145187 NM_145188 NM_145189 NM_145190 NM_145273 NM_145341 NM_145660 NM_145686 NM_145687 NM_145735 NM_145861 NM_145893 NM_147147 NM_147160 NM_147180 NM_147187 NM_147196 NM_147202 NM_148921 NM_152261 NM_152321 NM_152322 NM_152376 NM_152393 NM_152414 NM_152423 NM_152424 NM_152460 NM_152470 NM_152475 NM_152507 NM_152509 NM_152527 NM_152545 NM_152563 NM_152582 NM_152624 NM_152653 NM_152734 NM_152735 NM_152742 NM_152758 NM_152787 NM_152793 NM_152864 NM_152879 NM_152995 NM_153013 NM_153026 NM_153032 NM_153034 NM_153451 NM_153497 NM_153608 NM_153609 NM_153639 NM_153685 NM_153746 NM_170744 NM_170769 NM_172163 NM_172219 NM_172220 NM_172239 NM_172367 NM_172387 NM_172388 NM_172389 NM_173075 NM_173199 NM_173214 NM_173473 NM_173515 NM_173578 NM_173582 NM_173590 NM_173621 NM_173627 NM_173641 NM_173664 NM_173680 NM_173728 NM_173854 NM_174937 NM_175077 NM_175609 NM_175866 NM_175901 NM_175907 NM_175922 NM_176815 NM_177401 NM_177405 NM_177424 NM_177454 NM_177555 NM_177558 NM_177559 NM_177560 NM_177954 NM_177996 NM_178136 NM_178326 NM_178432 NM_178450 NM_178500 NM_178554 NM_178579 NM_178586 NM_178836 NM_178839 NM_181078 NM_181079 NM_181336 NM_181349 NM_181353 NM_181443 NM_181492 NM_181552 NM_181701 NM_181725 NM_181740 NM_181744 NM_181826 NM_181827 NM_181844 NM_181871 NM_181876 NM_181877 NM_181897 NM_182499 NM_182511 NM_182524 NM_182525 NM_182531 NM_182551 NM_182554 NM_182557 NM_182583 NM_182661 NM_182663 NM_182664 NM_182665 NM_182683 NM_182684 NM_182700 NM_182729 NM_182742 NM_182743 NM_182752 NM_182796 NM_182894 NM_182896 NM_182906 NM_182960 NM_182964 NM_182982 NM_183398 NM_183399 NM_183400 NM_183401 NM_194071 NM_194283 NM_194286 NM_194288 NM_194298 NM_198056 NM_198061 NM_198196 NM_198256 NM_198257 NM_198258 NM_198276 NM_198312 NM_198325 NM_198390 NM_198462 NM_198474 NM_198476 NM_198477 NM_198481 NM_198524 NM_198560 NM_198686 NM_198834 NM_198835 NM_198836 NM_198837 NM_198838 NM_198839 NM_198890 NM_198896 NM_198956 NM_198969 NM_198970 NM_199005 NM_199045 NM_199050 NM_199054 NM_199131 NM_199169 NM_199170 NM_199171 NM_199206 NM_199228 NM_199334 NM_199356 NM_201397 NM_201520 NM_201524 NM_201525 NM_201574 NM_203308 NM_203318 NM_203377 NM_203378 NM_203411 NM_203426 NM_203453 NM_203454 NM_203463 NM_205846 NM_205860 NM_206828 NM_207009 NM_207015 NM_207174 NM_207333 NM_207371 NM_207380 NM_207488 NM_207518 NM_207585 NM_207627 NM_207628 NM_207629 NM_207630 NM_207645 NM_212540 NM_212543 NM_213590 NM_213596 XM_029353 XM_032945 XM_035601 XM_037557 XM_042698 XM_042978 XM_051200 XM_051862 XM_057107 XM_058931 XM_059482 XM_059689 XM_114166 XM_166140 XM_166320 XM_173083 XM_173087 XM_208658 XM_290609 XM_291128 XM_291208 XM_295058 XM_370603 XM_370838 XM_371074 XM_371369 XM_371664 XM_371761 XM_371933 XM_372198 XM_372227 XM_372267 XM_372584 XM_372716 XM_373531 XM_374069 XM_374491 XM_375698 XM_375713 XM_375821 XM_375912 XM_376018 XM_376062 XM_376212 XM_376588 XM_376679 XM_376680 XM_376720 XM_376784 XM_376821 XM_376905 XM_378178 XM_378211 XM_378236 XM_378321 XM_378491 XM_378511 XM_378516 XM_378617 XM_378620 XM_378661 XM_378678 XM_378703 XM_378753 XM_378766 XM_378783 XM_378798 XM_378860 XM_378914 XM_379025 XM_379260 XM_379273 XM_379309 XM_379336 XM_379363 XM_379373 XM_379409 XM_379452 XM_379456 XM_379512 XM_379584 XM_379657 XM_379704 XM_379800 XM_379850 XM_379933 XM_379934 XM_379967 XM_380008 XM_380135 XM_495807 XM_495881 XM_496050 XM_496251 XM_496351 XM_496408 XM_496436 XM_496467 XM_496581 XM_496782 XM_496904 XM_496981 XM_496983 XM_496984 XM_496985 XM_497002 XM_497080 XM_498440 XM_498467 XM_498488 XM_498513 XM_498564 XM_498751 XM_498753 XM_498884 XM_498928 XM_498960 XM_498972 XM_498981 XM_498986 XM_498992 XM_499008 XM_499039 XM_499047 XM_499051 XM_499056 XM_499057 XM_499105 XM_499336 XM_499503 XM_499505 XM_499570 XM_499597 XR_000167 XR_000184 XR_000192 XR_000261 XR_000292 XR_000294
Genes with multiple seed matches:
NM_000307 NM_000332 NM_000664 NM_000814 NM_001001928 NM_001001929 NM_001001930 NM_001002257 NM_001009905 NM_001010846 NM_001013713 NM_001018050 NM_001018051 NM_001018052 NM_001025076 NM_001025077 NM_001420 NM_002254 NM_002382 NM_003506 NM_003724 NM_003957 NM_004302 NM_004566 NM_004797 NM_004985 NM_005036 NM_005202 NM_005373 NM_005828 NM_006033 NM_006257 NM_006344 NM_006561 NM_006931 NM_012479 NM_013345 NM_014235 NM_014388 NM_014646 NM_014665 NM_014728 NM_014957 NM_014964 NM_015033 NM_015035 NM_015227 NM_015995 NM_016332 NM_017450 NM_018215 NM_019102 NM_020182 NM_020400 NM_020546 NM_020710 NM_021116 NM_021140 NM_021912 NM_021961 NM_022898 NM_024771 NM_030626 NM_030796 NM_032281 NM_032853 NM_033360 NM_130786 NM_138338 NM_138444 NM_138576 NM_144606 NM_145112 NM_145113 NM_148921 NM_152376 NM_153685 NM_173075 NM_173582 NM_173627 NM_175922 NM_182551 NM_182906 NM_194071 NM_194288 NM_198835 NM_199169 NM_199170 NM_199171 NM_201520 XM_042698 XM_208658 XM_495881
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)