VIRsiRNAdb

Predicted off-targets seeds for siRNA "agagcauuggaacgucgga" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :446.
Total Genes with multiple seed matches: 17.
Genes with at least one seed match: NM_000037 NM_000114 NM_000199 NM_000211 NM_000278 NM_000409 NM_000527 NM_000632 NM_000664 NM_000674 NM_000675 NM_000719 NM_000757 NM_000838 NM_000841 NM_000843 NM_000958 NM_001001188 NM_001001418 NM_001001433 NM_001001434 NM_001001438 NM_001001549 NM_001001550 NM_001001555 NM_001001687 NM_001001696 NM_001003674 NM_001003675 NM_001003686 NM_001003687 NM_001003689 NM_001004302 NM_001004321 NM_001005388 NM_001005910 NM_001005911 NM_001005912 NM_001005913 NM_001006605 NM_001007225 NM_001012511 NM_001013404 NM_001013661 NM_001013692 NM_001013721 NM_001013723 NM_001013726 NM_001013836 NM_001013837 NM_001014440 NM_001015886 NM_001017405 NM_001017440 NM_001018050 NM_001018051 NM_001018052 NM_001018056 NM_001018065 NM_001018066 NM_001023565 NM_001023587 NM_001024608 NM_001024631 NM_001024654 NM_001198 NM_001346 NM_001348 NM_001451 NM_001455 NM_002105 NM_002149 NM_002228 NM_002332 NM_002401 NM_002481 NM_002518 NM_002522 NM_002531 NM_002617 NM_002653 NM_002716 NM_002719 NM_002898 NM_002929 NM_002957 NM_003036 NM_003107 NM_003169 NM_003224 NM_003247 NM_003378 NM_003383 NM_003439 NM_003483 NM_003486 NM_003550 NM_003655 NM_003670 NM_003712 NM_003763 NM_003799 NM_003924 NM_003987 NM_003988 NM_003989 NM_003990 NM_004220 NM_004338 NM_004364 NM_004383 NM_004455 NM_004610 NM_004732 NM_004821 NM_004849 NM_004907 NM_004914 NM_004924 NM_004993 NM_005098 NM_005157 NM_005194 NM_005231 NM_005234 NM_005311 NM_005417 NM_005678 NM_005853 NM_005882 NM_005892 NM_005928 NM_005935 NM_005996 NM_006162 NM_006283 NM_006315 NM_006374 NM_006393 NM_006505 NM_006546 NM_006548 NM_006578 NM_006804 NM_006822 NM_006997 NM_006999 NM_007046 NM_007174 NM_007271 NM_007313 NM_007345 NM_007346 NM_009588 NM_012083 NM_012398 NM_012405 NM_012478 NM_013275 NM_013433 NM_014023 NM_014112 NM_014271 NM_014275 NM_014279 NM_014427 NM_014567 NM_014590 NM_014647 NM_014665 NM_014760 NM_014772 NM_014792 NM_014835 NM_014851 NM_014902 NM_014916 NM_015011 NM_015033 NM_015059 NM_015090 NM_015094 NM_015107 NM_015124 NM_015191 NM_015205 NM_015259 NM_015270 NM_015282 NM_015318 NM_015329 NM_015381 NM_015401 NM_015627 NM_015981 NM_016022 NM_016046 NM_016114 NM_016150 NM_016194 NM_016209 NM_016568 NM_016569 NM_016596 NM_016735 NM_017433 NM_017450 NM_017550 NM_017789 NM_017863 NM_017896 NM_017966 NM_018181 NM_018209 NM_018390 NM_018679 NM_018941 NM_018947 NM_018959 NM_019081 NM_020062 NM_020064 NM_020123 NM_020180 NM_020319 NM_020445 NM_020475 NM_020476 NM_020477 NM_020648 NM_020731 NM_020761 NM_020764 NM_020851 NM_020901 NM_020956 NM_020983 NM_021248 NM_021570 NM_021638 NM_021812 NM_022114 NM_022123 NM_022157 NM_022463 NM_022468 NM_022480 NM_022749 NM_022773 NM_023067 NM_024017 NM_024585 NM_024676 NM_024698 NM_024705 NM_024735 NM_024778 NM_024845 NM_024859 NM_024922 NM_024944 NM_025079 NM_025204 NM_030645 NM_030660 NM_031468 NM_031476 NM_031896 NM_031949 NM_032042 NM_032105 NM_032179 NM_032189 NM_032329 NM_032366 NM_032529 NM_032732 NM_032740 NM_032878 NM_032957 NM_032958 NM_032959 NM_033064 NM_033260 NM_033387 NM_033666 NM_052847 NM_052906 NM_053000 NM_053044 NM_054013 NM_057179 NM_058169 NM_058246 NM_079834 NM_080625 NM_080928 NM_130807 NM_133443 NM_133451 NM_134421 NM_138338 NM_138393 NM_138565 NM_138775 NM_138983 NM_144498 NM_145313 NM_147131 NM_147132 NM_152461 NM_152684 NM_152689 NM_152769 NM_152857 NM_152858 NM_152995 NM_153008 NM_153239 NM_153462 NM_153463 NM_153636 NM_153818 NM_170705 NM_170711 NM_170768 NM_171825 NM_172172 NM_172211 NM_172387 NM_172388 NM_172389 NM_173507 NM_173621 NM_173640 NM_173660 NM_173795 NM_175609 NM_175622 NM_175768 NM_175898 NM_175901 NM_175923 NM_177442 NM_177526 NM_177543 NM_178568 NM_178586 NM_178830 NM_181291 NM_181481 NM_181482 NM_181483 NM_181655 NM_181656 NM_181701 NM_181712 NM_181785 NM_182510 NM_182556 NM_182637 NM_182638 NM_182700 NM_182907 NM_183006 NM_194252 NM_194310 NM_194316 NM_194460 NM_198291 NM_198445 NM_198490 NM_198595 NM_198835 NM_198867 NM_198956 NM_199050 NM_199131 NM_199336 NM_199367 NM_199454 NM_201397 NM_201520 NM_201559 NM_201628 NM_203348 NM_203351 NM_206860 NM_206861 NM_206862 NM_207032 NM_207033 NM_207034 NM_207370 NM_207401 NM_207423 NM_207446 NM_207451 NM_207462 NM_207504 NM_207510 NM_207585 XM_032901 XM_032945 XM_290737 XM_293380 XM_294450 XM_371081 XM_371474 XM_371501 XM_373631 XM_373704 XM_373786 XM_373838 XM_374069 XM_374141 XM_374880 XM_375602 XM_376558 XM_378178 XM_378491 XM_378751 XM_378976 XM_379173 XM_379273 XM_379391 XM_379498 XM_379643 XM_380117 XM_495909 XM_495937 XM_496251 XM_496672 XM_496836 XM_498491 XM_498507 XM_498607 XM_498904 XM_498917 XM_499022 XM_499035 XM_499093 XM_499301 XM_499314 XM_499503 XR_000216	Genes with multiple seed matches: NM_001013836 NM_001013837 NM_003378 NM_003550 NM_004220 NM_005928 NM_014665 NM_015059 NM_020761 NM_021570 NM_024845 NM_175898 NM_194460 NM_207401 NM_207462 XM_373704 XM_379391

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA