VIRsiRNAdb

Predicted off-targets seeds for siRNA "aagccagcucgccuuaucgua" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :789.
Total Genes with multiple seed matches: 24.
Genes with at least one seed match: NM_000046 NM_000089 NM_000097 NM_000115 NM_000144 NM_000161 NM_000237 NM_000313 NM_000351 NM_000452 NM_000463 NM_000486 NM_000497 NM_000503 NM_000522 NM_000544 NM_000551 NM_000664 NM_000686 NM_000860 NM_000885 NM_000901 NM_000908 NM_001001394 NM_001001684 NM_001001686 NM_001001707 NM_001001874 NM_001001928 NM_001001929 NM_001001930 NM_001002261 NM_001002262 NM_001003665 NM_001003674 NM_001003675 NM_001003682 NM_001003799 NM_001004125 NM_001004299 NM_001004302 NM_001004328 NM_001004339 NM_001005386 NM_001005388 NM_001005463 NM_001005505 NM_001008742 NM_001008925 NM_001009553 NM_001009909 NM_001009913 NM_001009922 NM_001010908 NM_001010913 NM_001011513 NM_001011514 NM_001011667 NM_001011669 NM_001011670 NM_001012303 NM_001012329 NM_001012651 NM_001012713 NM_001012732 NM_001012761 NM_001013615 NM_001013642 NM_001013670 NM_001013681 NM_001013698 NM_001013705 NM_001013712 NM_001015045 NM_001015051 NM_001017405 NM_001017963 NM_001017979 NM_001018029 NM_001018065 NM_001018066 NM_001018089 NM_001018116 NM_001024024 NM_001024070 NM_001024071 NM_001024630 NM_001024843 NM_001024847 NM_001024933 NM_001024956 NM_001025233 NM_001025266 NM_001072 NM_001183 NM_001204 NM_001219 NM_001226 NM_001332 NM_001380 NM_001390 NM_001407 NM_001417 NM_001635 NM_001742 NM_001816 NM_001821 NM_001851 NM_001858 NM_001894 NM_001918 NM_001921 NM_002128 NM_002130 NM_002163 NM_002233 NM_002254 NM_002283 NM_002351 NM_002353 NM_002389 NM_002498 NM_002515 NM_002563 NM_002604 NM_002610 NM_002655 NM_002709 NM_002713 NM_002716 NM_002731 NM_002764 NM_002807 NM_002829 NM_002836 NM_002876 NM_002892 NM_002942 NM_002971 NM_003021 NM_003022 NM_003023 NM_003043 NM_003070 NM_003108 NM_003117 NM_003178 NM_003193 NM_003201 NM_003242 NM_003247 NM_003257 NM_003347 NM_003403 NM_003413 NM_003426 NM_003455 NM_003476 NM_003547 NM_003594 NM_003605 NM_003676 NM_003677 NM_003679 NM_003684 NM_003707 NM_003722 NM_003800 NM_003808 NM_003856 NM_003924 NM_004067 NM_004242 NM_004269 NM_004274 NM_004330 NM_004331 NM_004337 NM_004338 NM_004348 NM_004350 NM_004369 NM_004405 NM_004409 NM_004463 NM_004484 NM_004516 NM_004521 NM_004539 NM_004610 NM_004616 NM_004624 NM_004630 NM_004730 NM_004734 NM_004842 NM_004863 NM_004963 NM_004992 NM_005010 NM_005036 NM_005041 NM_005044 NM_005093 NM_005180 NM_005348 NM_005385 NM_005392 NM_005436 NM_005472 NM_005491 NM_005504 NM_005639 NM_005657 NM_005722 NM_005749 NM_005766 NM_005786 NM_005789 NM_005807 NM_005813 NM_005814 NM_005826 NM_005859 NM_005882 NM_005885 NM_005907 NM_005917 NM_005924 NM_005999 NM_006007 NM_006030 NM_006033 NM_006045 NM_006067 NM_006085 NM_006132 NM_006203 NM_006217 NM_006224 NM_006251 NM_006281 NM_006457 NM_006465 NM_006489 NM_006499 NM_006500 NM_006508 NM_006572 NM_006577 NM_006578 NM_006624 NM_006628 NM_006668 NM_006749 NM_006775 NM_006864 NM_006897 NM_006918 NM_006969 NM_007006 NM_007120 NM_007150 NM_007168 NM_007306 NM_007345 NM_007372 NM_012080 NM_012160 NM_012197 NM_012281 NM_012287 NM_012308 NM_012309 NM_012323 NM_012409 NM_012465 NM_013232 NM_013238 NM_013276 NM_013372 NM_013449 NM_014039 NM_014043 NM_014110 NM_014117 NM_014153 NM_014267 NM_014296 NM_014320 NM_014339 NM_014358 NM_014372 NM_014396 NM_014424 NM_014494 NM_014591 NM_014604 NM_014612 NM_014672 NM_014690 NM_014724 NM_014737 NM_014776 NM_014784 NM_014850 NM_014871 NM_014883 NM_014891 NM_014910 NM_014913 NM_014934 NM_014936 NM_014945 NM_015044 NM_015063 NM_015088 NM_015090 NM_015150 NM_015170 NM_015198 NM_015271 NM_015278 NM_015288 NM_015310 NM_015368 NM_015436 NM_015444 NM_015447 NM_015481 NM_015554 NM_015568 NM_015569 NM_015678 NM_015690 NM_016018 NM_016023 NM_016038 NM_016045 NM_016083 NM_016133 NM_016138 NM_016194 NM_016201 NM_016205 NM_016206 NM_016323 NM_016377 NM_016559 NM_016567 NM_016599 NM_016606 NM_016941 NM_017514 NM_017540 NM_017594 NM_017635 NM_017643 NM_017681 NM_017755 NM_017770 NM_017915 NM_017935 NM_017982 NM_018043 NM_018069 NM_018092 NM_018097 NM_018107 NM_018208 NM_018210 NM_018215 NM_018222 NM_018238 NM_018243 NM_018247 NM_018285 NM_018312 NM_018367 NM_018371 NM_018409 NM_018448 NM_018469 NM_018490 NM_018555 NM_018841 NM_018932 NM_018948 NM_018951 NM_018976 NM_018992 NM_019027 NM_019043 NM_019075 NM_019076 NM_019077 NM_019078 NM_019093 NM_019117 NM_019590 NM_020128 NM_020248 NM_020338 NM_020341 NM_020348 NM_020398 NM_020401 NM_020640 NM_020648 NM_020697 NM_020738 NM_020739 NM_020742 NM_020764 NM_020774 NM_020815 NM_020839 NM_020850 NM_020918 NM_020935 NM_020981 NM_021015 NM_021027 NM_021038 NM_021045 NM_021205 NM_021218 NM_021242 NM_021615 NM_021624 NM_021946 NM_021960 NM_021961 NM_022003 NM_022114 NM_022150 NM_022469 NM_022481 NM_022663 NM_022734 NM_022898 NM_022905 NM_022912 NM_023000 NM_023001 NM_024052 NM_024085 NM_024496 NM_024510 NM_024517 NM_024545 NM_024548 NM_024561 NM_024583 NM_024600 NM_024607 NM_024611 NM_024613 NM_024638 NM_024756 NM_024808 NM_024841 NM_024854 NM_024875 NM_024887 NM_024939 NM_024996 NM_025097 NM_025191 NM_025201 NM_025243 NM_030574 NM_030621 NM_030627 NM_030637 NM_030755 NM_030765 NM_030780 NM_031231 NM_031232 NM_031265 NM_031427 NM_031442 NM_031463 NM_031887 NM_031888 NM_031947 NM_032138 NM_032145 NM_032239 NM_032287 NM_032354 NM_032433 NM_032506 NM_032596 NM_032787 NM_032800 NM_032838 NM_032865 NM_032866 NM_032882 NM_032975 NM_032980 NM_032992 NM_033089 NM_033181 NM_033224 NM_033252 NM_033346 NM_033387 NM_033389 NM_033666 NM_052958 NM_052966 NM_053052 NM_053277 NM_057164 NM_057165 NM_057166 NM_057167 NM_057169 NM_057170 NM_057175 NM_078485 NM_080612 NM_080820 NM_080829 NM_080840 NM_080841 NM_080867 NM_133329 NM_133473 NM_133477 NM_134264 NM_138409 NM_138558 NM_138576 NM_138633 NM_138640 NM_138730 NM_138771 NM_138777 NM_138811 NM_139018 NM_139045 NM_139136 NM_139316 NM_144582 NM_144588 NM_144610 NM_144633 NM_144692 NM_144710 NM_144778 NM_144967 NM_144973 NM_145025 NM_145175 NM_145238 NM_145257 NM_145273 NM_145310 NM_145326 NM_145756 NM_145808 NM_147156 NM_147168 NM_147202 NM_148170 NM_152221 NM_152271 NM_152278 NM_152321 NM_152362 NM_152416 NM_152450 NM_152470 NM_152527 NM_152558 NM_152581 NM_152588 NM_152624 NM_152665 NM_152720 NM_152771 NM_152793 NM_152878 NM_152888 NM_152903 NM_152996 NM_152999 NM_153035 NM_153191 NM_153238 NM_153332 NM_153335 NM_153343 NM_153381 NM_153646 NM_153647 NM_153648 NM_153683 NM_153715 NM_153748 NM_153826 NM_170743 NM_170768 NM_170773 NM_170774 NM_172020 NM_172058 NM_172059 NM_172060 NM_172070 NM_172087 NM_172088 NM_172089 NM_172241 NM_172344 NM_172350 NM_172351 NM_172352 NM_172353 NM_172354 NM_172355 NM_172356 NM_172357 NM_172358 NM_172359 NM_172360 NM_172361 NM_173064 NM_173065 NM_173191 NM_173192 NM_173193 NM_173194 NM_173195 NM_173342 NM_173459 NM_173464 NM_173477 NM_173510 NM_173516 NM_173640 NM_173667 NM_174911 NM_174945 NM_175610 NM_175723 NM_175854 NM_175864 NM_175873 NM_176863 NM_177438 NM_177965 NM_177968 NM_177990 NM_178125 NM_178550 NM_178584 NM_181041 NM_181332 NM_181425 NM_181481 NM_181482 NM_181483 NM_181502 NM_181670 NM_181783 NM_181789 NM_181846 NM_181900 NM_182531 NM_182546 NM_182562 NM_182700 NM_182763 NM_182948 NM_183065 NM_194285 NM_198156 NM_198157 NM_198236 NM_198321 NM_198401 NM_198404 NM_198442 NM_198484 NM_198549 NM_198835 NM_198859 NM_198956 NM_198968 NM_198995 NM_199050 NM_199176 NM_199177 NM_199421 NM_199454 NM_199461 NM_201264 NM_201543 NM_201544 NM_201545 NM_201995 NM_201998 NM_203307 NM_203499 NM_205861 NM_205862 NM_206855 NM_206876 NM_206877 NM_206907 NM_206909 NM_206914 NM_207285 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207304 NM_207325 NM_207335 NM_207499 NM_207585 NM_213604 XM_032945 XM_038436 XM_042066 XM_043653 XM_049078 XM_087353 XM_173087 XM_208524 XM_210908 XM_290737 XM_291729 XM_298151 XM_370603 XM_370636 XM_371374 XM_371575 XM_371590 XM_371891 XM_372039 XM_372050 XM_372205 XM_372267 XM_372556 XM_372584 XM_373742 XM_373922 XM_374025 XM_374422 XM_375853 XM_376386 XM_376423 XM_376454 XM_378273 XM_378280 XM_378590 XM_378708 XM_379075 XM_379235 XM_379402 XM_379458 XM_495798 XM_496036 XM_496371 XM_496766 XM_496879 XM_496907 XM_496959 XM_496966 XM_497102 XM_498469 XM_498487 XM_498727 XM_498853 XM_498876 XM_498929 XM_499298 XM_499309 XM_499343 XR_000261	Genes with multiple seed matches: NM_000115 NM_001017979 NM_003022 NM_003924 NM_005491 NM_005789 NM_014612 NM_014850 NM_016045 NM_016201 NM_016206 NM_018312 NM_018371 NM_018932 NM_022912 NM_024052 NM_133477 NM_144778 NM_152450 NM_173464 NM_176863 NM_207304 XM_371590 XM_378708

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA