VIRsiRNAdb

Predicted off-targets seeds for siRNA "cucguccccuccggccguacc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :583.
Total Genes with multiple seed matches: 18.
Genes with at least one seed match: NM_000053 NM_000068 NM_000157 NM_000254 NM_000296 NM_000351 NM_000417 NM_000458 NM_000500 NM_000533 NM_000546 NM_000547 NM_000558 NM_000564 NM_000598 NM_000664 NM_000746 NM_000814 NM_000903 NM_001001188 NM_001001560 NM_001001706 NM_001001852 NM_001002257 NM_001002919 NM_001003399 NM_001003809 NM_001003845 NM_001004305 NM_001004426 NM_001004430 NM_001005386 NM_001005388 NM_001005463 NM_001005609 NM_001005741 NM_001005742 NM_001005749 NM_001005750 NM_001005918 NM_001006113 NM_001007237 NM_001007262 NM_001008388 NM_001008410 NM_001009566 NM_001009881 NM_001009882 NM_001009944 NM_001010846 NM_001010853 NM_001010866 NM_001012426 NM_001012427 NM_001012756 NM_001013398 NM_001013693 NM_001013842 NM_001017523 NM_001017995 NM_001018051 NM_001018072 NM_001018100 NM_001018101 NM_001025108 NM_001025231 NM_001025266 NM_001092 NM_001093 NM_001174 NM_001234 NM_001246 NM_001292 NM_001399 NM_001419 NM_001440 NM_001447 NM_001449 NM_001542 NM_001706 NM_001759 NM_001763 NM_001767 NM_001798 NM_001964 NM_001966 NM_001999 NM_002067 NM_002074 NM_002080 NM_002131 NM_002207 NM_002229 NM_002267 NM_002285 NM_002314 NM_002396 NM_002460 NM_002569 NM_002584 NM_002588 NM_002594 NM_002596 NM_002653 NM_002836 NM_002845 NM_002957 NM_003012 NM_003113 NM_003118 NM_003137 NM_003189 NM_003190 NM_003245 NM_003247 NM_003260 NM_003320 NM_003458 NM_003507 NM_003560 NM_003597 NM_003605 NM_003681 NM_003735 NM_003736 NM_003740 NM_003749 NM_003774 NM_003826 NM_003888 NM_003895 NM_003930 NM_003950 NM_004030 NM_004112 NM_004116 NM_004204 NM_004308 NM_004350 NM_004368 NM_004438 NM_004518 NM_004569 NM_004571 NM_004613 NM_004614 NM_004623 NM_004657 NM_004717 NM_004745 NM_004746 NM_004845 NM_004974 NM_004991 NM_005026 NM_005027 NM_005085 NM_005096 NM_005116 NM_005169 NM_005417 NM_005432 NM_005480 NM_005528 NM_005722 NM_005740 NM_005920 NM_006071 NM_006074 NM_006091 NM_006137 NM_006202 NM_006369 NM_006465 NM_006591 NM_006710 NM_006731 NM_006738 NM_006772 NM_006803 NM_006805 NM_006820 NM_006913 NM_006916 NM_007007 NM_007032 NM_007048 NM_007067 NM_007159 NM_007177 NM_007200 NM_007371 NM_012259 NM_012408 NM_012437 NM_013260 NM_013345 NM_013365 NM_013390 NM_013423 NM_013427 NM_013435 NM_013945 NM_014030 NM_014190 NM_014240 NM_014415 NM_014421 NM_014425 NM_014427 NM_014473 NM_014553 NM_014598 NM_014667 NM_014682 NM_014701 NM_014776 NM_014784 NM_014835 NM_014844 NM_014850 NM_014851 NM_014869 NM_014897 NM_014919 NM_014944 NM_014974 NM_015025 NM_015056 NM_015085 NM_015090 NM_015094 NM_015100 NM_015155 NM_015192 NM_015205 NM_015245 NM_015266 NM_015269 NM_015270 NM_015326 NM_015338 NM_015344 NM_015352 NM_015362 NM_015367 NM_015381 NM_015401 NM_015460 NM_015559 NM_015832 NM_015946 NM_016048 NM_016080 NM_016120 NM_016141 NM_016154 NM_016169 NM_016327 NM_016467 NM_016596 NM_016735 NM_017415 NM_017482 NM_017484 NM_017487 NM_017555 NM_017577 NM_017713 NM_017753 NM_017763 NM_017787 NM_017936 NM_018090 NM_018234 NM_018267 NM_018339 NM_018362 NM_018389 NM_018708 NM_018912 NM_018913 NM_018914 NM_018915 NM_018916 NM_018917 NM_018918 NM_018919 NM_018920 NM_018921 NM_018922 NM_018923 NM_018924 NM_018925 NM_018926 NM_018927 NM_018928 NM_018929 NM_019001 NM_019022 NM_019034 NM_019111 NM_019114 NM_019613 NM_020038 NM_020165 NM_020193 NM_020197 NM_020315 NM_020354 NM_020438 NM_020663 NM_020703 NM_020777 NM_020863 NM_020983 NM_021036 NM_021161 NM_021180 NM_021912 NM_021962 NM_022081 NM_022463 NM_022818 NM_022831 NM_023002 NM_023079 NM_023934 NM_024052 NM_024516 NM_024628 NM_024709 NM_024831 NM_024859 NM_024876 NM_024885 NM_024924 NM_024949 NM_024989 NM_025106 NM_025138 NM_025208 NM_025250 NM_030568 NM_030570 NM_030802 NM_030818 NM_030895 NM_031887 NM_032012 NM_032088 NM_032092 NM_032189 NM_032227 NM_032242 NM_032357 NM_032403 NM_032732 NM_032994 NM_033034 NM_033045 NM_033086 NM_033130 NM_033135 NM_033315 NM_033337 NM_033446 NM_033505 NM_052827 NM_052879 NM_052898 NM_052919 NM_052932 NM_054027 NM_054030 NM_054033 NM_057169 NM_057170 NM_058238 NM_080551 NM_080840 NM_080841 NM_133259 NM_133332 NM_133333 NM_133334 NM_133510 NM_138317 NM_138318 NM_138457 NM_138468 NM_138568 NM_138693 NM_138931 NM_139159 NM_139320 NM_144498 NM_144621 NM_144669 NM_144718 NM_144767 NM_145042 NM_145050 NM_145652 NM_145865 NM_145899 NM_145901 NM_145902 NM_145903 NM_145904 NM_145905 NM_145911 NM_146388 NM_148911 NM_148920 NM_152261 NM_152322 NM_152344 NM_152346 NM_152423 NM_152554 NM_152641 NM_152840 NM_152841 NM_152842 NM_152843 NM_152857 NM_152858 NM_153031 NM_153239 NM_153271 NM_153355 NM_153381 NM_153462 NM_153463 NM_153636 NM_153701 NM_170696 NM_170697 NM_170719 NM_170743 NM_172346 NM_173064 NM_173065 NM_173522 NM_173536 NM_173602 NM_173617 NM_173623 NM_173632 NM_173633 NM_173639 NM_173653 NM_173805 NM_174918 NM_175075 NM_175719 NM_175721 NM_175722 NM_175726 NM_175878 NM_175884 NM_175892 NM_176801 NM_177972 NM_177978 NM_181358 NM_181359 NM_182500 NM_182525 NM_182551 NM_182584 NM_182626 NM_182631 NM_182683 NM_182684 NM_182734 NM_182915 NM_183047 NM_183048 NM_183245 NM_183353 NM_194428 NM_197939 NM_198173 NM_198174 NM_198189 NM_198236 NM_198268 NM_198269 NM_198291 NM_198427 NM_198443 NM_198537 NM_198835 NM_198992 NM_199188 NM_199190 NM_199229 NM_199262 NM_199423 NM_199478 NM_201277 NM_201520 NM_201565 NM_201599 NM_203307 NM_203327 NM_203413 NM_203414 NM_203415 NM_203446 NM_203468 NM_207125 NM_207129 NM_207171 NM_207299 NM_207390 NM_207400 NM_207419 NM_207429 NM_207432 NM_207437 NM_207503 NM_207645 NM_207646 NM_212502 NM_212503 XM_027236 XM_035601 XM_037523 XM_038150 XM_045421 XM_046264 XM_047355 XM_048898 XM_059954 XM_067585 XM_087353 XM_087672 XM_117117 XM_166164 XM_170658 XM_209913 XM_211749 XM_291247 XM_371664 XM_373539 XM_373883 XM_375373 XM_375646 XM_377028 XM_378272 XM_378331 XM_378544 XM_378684 XM_378712 XM_378735 XM_378843 XM_378876 XM_379206 XM_379235 XM_379391 XM_379437 XM_379584 XM_379629 XM_379656 XM_379664 XM_379665 XM_496165 XM_496689 XM_498434 XM_498557 XM_498945 XM_499030 XM_499148 XM_499149 XM_499182 XM_499496 XM_499563 XR_000217 XR_000259 XR_000275	Genes with multiple seed matches: NM_001005386 NM_001005388 NM_005116 NM_005722 NM_006805 NM_014844 NM_015090 NM_015205 NM_020193 NM_020315 NM_032189 NM_152346 NM_152554 NM_199423 NM_201565 NM_203327 XM_045421 XR_000217

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA