VIRsiRNAdb

Predicted off-targets seeds for siRNA "gggcagaacugcggcuaucgc" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :512.
Total Genes with multiple seed matches: 15.
Genes with at least one seed match: NM_000115 NM_000144 NM_000201 NM_000332 NM_000351 NM_000621 NM_000625 NM_000664 NM_000733 NM_000793 NM_000991 NM_001001686 NM_001001707 NM_001002014 NM_001002015 NM_001003940 NM_001003942 NM_001003943 NM_001004054 NM_001004302 NM_001005359 NM_001005364 NM_001005388 NM_001006604 NM_001007023 NM_001007102 NM_001007176 NM_001007538 NM_001008234 NM_001008536 NM_001010924 NM_001010983 NM_001011666 NM_001011667 NM_001011669 NM_001011670 NM_001012713 NM_001012761 NM_001012976 NM_001012982 NM_001013670 NM_001013698 NM_001014797 NM_001015051 NM_001017392 NM_001017408 NM_001017528 NM_001017529 NM_001017530 NM_001017979 NM_001018029 NM_001023563 NM_001024372 NM_001024630 NM_001024808 NM_001024858 NM_001024956 NM_001025233 NM_001092 NM_001167 NM_001186 NM_001204 NM_001257 NM_001275 NM_001287 NM_001292 NM_001334 NM_001380 NM_001426 NM_001548 NM_001650 NM_001688 NM_001802 NM_001816 NM_001908 NM_002017 NM_002080 NM_002130 NM_002293 NM_002401 NM_002523 NM_002562 NM_002665 NM_002820 NM_002867 NM_002868 NM_002876 NM_003006 NM_003025 NM_003030 NM_003201 NM_003236 NM_003385 NM_003439 NM_003476 NM_003679 NM_003687 NM_003692 NM_003749 NM_003790 NM_003808 NM_003856 NM_003921 NM_003924 NM_003938 NM_004028 NM_004348 NM_004350 NM_004360 NM_004409 NM_004449 NM_004473 NM_004474 NM_004484 NM_004521 NM_004557 NM_004616 NM_004730 NM_004745 NM_004863 NM_004904 NM_004929 NM_005010 NM_005041 NM_005063 NM_005069 NM_005180 NM_005197 NM_005207 NM_005232 NM_005327 NM_005328 NM_005398 NM_005400 NM_005436 NM_005458 NM_005561 NM_005627 NM_005657 NM_005736 NM_005769 NM_005789 NM_005813 NM_006031 NM_006132 NM_006206 NM_006210 NM_006281 NM_006348 NM_006438 NM_006500 NM_006546 NM_006557 NM_006606 NM_006614 NM_006762 NM_006884 NM_006918 NM_006927 NM_006930 NM_006931 NM_006955 NM_007107 NM_007121 NM_007306 NM_012080 NM_012129 NM_012156 NM_012172 NM_012192 NM_012309 NM_012465 NM_013238 NM_013449 NM_013989 NM_014039 NM_014117 NM_014320 NM_014424 NM_014553 NM_014583 NM_014600 NM_014642 NM_014850 NM_014867 NM_015063 NM_015090 NM_015265 NM_015288 NM_015310 NM_015313 NM_015366 NM_015897 NM_016025 NM_016133 NM_016359 NM_016484 NM_016529 NM_016577 NM_016599 NM_016606 NM_016827 NM_016828 NM_016829 NM_017412 NM_017623 NM_017701 NM_017828 NM_017848 NM_017924 NM_018092 NM_018130 NM_018208 NM_018340 NM_018342 NM_018367 NM_018440 NM_018446 NM_018454 NM_018469 NM_018728 NM_018847 NM_018948 NM_018951 NM_018988 NM_019094 NM_019555 NM_020165 NM_020215 NM_020326 NM_020348 NM_020357 NM_020398 NM_020399 NM_020727 NM_020764 NM_020834 NM_020865 NM_020905 NM_020918 NM_020993 NM_021038 NM_021201 NM_021205 NM_021242 NM_021249 NM_021260 NM_021824 NM_021962 NM_021969 NM_022150 NM_022473 NM_022549 NM_022734 NM_022901 NM_022905 NM_022912 NM_024034 NM_024080 NM_024301 NM_024600 NM_024626 NM_024812 NM_024854 NM_024887 NM_024953 NM_025092 NM_025163 NM_030574 NM_030627 NM_030631 NM_030641 NM_030765 NM_030882 NM_030937 NM_031887 NM_031888 NM_032287 NM_032438 NM_032445 NM_032523 NM_032596 NM_032664 NM_032682 NM_032859 NM_032862 NM_032866 NM_032947 NM_033224 NM_033285 NM_033291 NM_033346 NM_033421 NM_033503 NM_033640 NM_033666 NM_052958 NM_052966 NM_080647 NM_080829 NM_080867 NM_130773 NM_133370 NM_133445 NM_138316 NM_138347 NM_138409 NM_138694 NM_138731 NM_138771 NM_138811 NM_139266 NM_144567 NM_144693 NM_144778 NM_144967 NM_145117 NM_145165 NM_145175 NM_145238 NM_145257 NM_145637 NM_145693 NM_145727 NM_145739 NM_147168 NM_147780 NM_147781 NM_147782 NM_147783 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148971 NM_148972 NM_148973 NM_148974 NM_148977 NM_148978 NM_152233 NM_152235 NM_152278 NM_152374 NM_152439 NM_152636 NM_152832 NM_152883 NM_152897 NM_152932 NM_152996 NM_153032 NM_153207 NM_153238 NM_153292 NM_153381 NM_153487 NM_153619 NM_153683 NM_153715 NM_153823 NM_172020 NM_172070 NM_172087 NM_172088 NM_172089 NM_172346 NM_173459 NM_173597 NM_173617 NM_173851 NM_174905 NM_174911 NM_174945 NM_175567 NM_175568 NM_175873 NM_175876 NM_176815 NM_176863 NM_177427 NM_177996 NM_178441 NM_178550 NM_181333 NM_181425 NM_181491 NM_181502 NM_181733 NM_181900 NM_182500 NM_182503 NM_182540 NM_182637 NM_182638 NM_182700 NM_182898 NM_182899 NM_182918 NM_182964 NM_194071 NM_194294 NM_197939 NM_198256 NM_198257 NM_198258 NM_198325 NM_198404 NM_198576 NM_198835 NM_198859 NM_198956 NM_198964 NM_198995 NM_199040 NM_199050 NM_199054 NM_199078 NM_199421 NM_201565 NM_203307 NM_203351 NM_205861 NM_206866 NM_206909 NM_206938 NM_206939 NM_206940 NM_207009 NM_207292 NM_207293 NM_207294 NM_207295 NM_207296 NM_207297 NM_207304 NM_207306 NM_207385 NM_207387 NM_207458 NM_207469 NM_207495 NM_213604 XM_032945 XM_043653 XM_047550 XM_049237 XM_058720 XM_087353 XM_087386 XM_170842 XM_172801 XM_173087 XM_290401 XM_291075 XM_298151 XM_370607 XM_371514 XM_372556 XM_372584 XM_373030 XM_373922 XM_374025 XM_374051 XM_375153 XM_375185 XM_375853 XM_376254 XM_376278 XM_376334 XM_376586 XM_378346 XM_378394 XM_378399 XM_378590 XM_378650 XM_378655 XM_378777 XM_378921 XM_379075 XM_379249 XM_379276 XM_379452 XM_379501 XM_379595 XM_379664 XM_379665 XM_379798 XM_379877 XM_380120 XM_496036 XM_496129 XM_496879 XM_496907 XM_497010 XM_497102 XM_498469 XM_498532 XM_498559 XM_498649 XM_498750 XM_498859 XM_499147 XM_499298 XM_499309 XM_499343 XR_000182 XR_000195 XR_000261 XR_000292	Genes with multiple seed matches: NM_000115 NM_000793 NM_001007023 NM_005789 NM_006546 NM_013989 NM_019094 NM_020918 NM_030627 NM_153683 NM_176863 NM_198404 NM_199040 XM_498532 XM_498859

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA