VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"gcccccgauugggggcgac"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1373
.
Total Genes with multiple seed matches:
130
.
Genes with at least one seed match:
NM_000037 NM_000062 NM_000068 NM_000098 NM_000113 NM_000134 NM_000151 NM_000166 NM_000181 NM_000209 NM_000219 NM_000235 NM_000237 NM_000272 NM_000332 NM_000346 NM_000349 NM_000402 NM_000411 NM_000441 NM_000446 NM_000455 NM_000500 NM_000527 NM_000545 NM_000641 NM_000674 NM_000682 NM_000702 NM_000704 NM_000849 NM_000890 NM_000911 NM_000931 NM_000960 NM_000961 NM_001001188 NM_001001419 NM_001001420 NM_001001434 NM_001001675 NM_001001680 NM_001001685 NM_001001688 NM_001001690 NM_001001693 NM_001001697 NM_001001698 NM_001001701 NM_001001791 NM_001001873 NM_001002811 NM_001002812 NM_001002814 NM_001004106 NM_001004302 NM_001004318 NM_001004320 NM_001004333 NM_001004336 NM_001004434 NM_001004720 NM_001004722 NM_001005303 NM_001005473 NM_001005505 NM_001005609 NM_001005914 NM_001006641 NM_001006642 NM_001006643 NM_001007237 NM_001007243 NM_001007529 NM_001008220 NM_001008223 NM_001008228 NM_001008229 NM_001008234 NM_001008392 NM_001008395 NM_001008408 NM_001008493 NM_001008563 NM_001008658 NM_001008701 NM_001008707 NM_001009956 NM_001009960 NM_001009998 NM_001010850 NM_001010888 NM_001010911 NM_001010926 NM_001010980 NM_001012339 NM_001012508 NM_001012643 NM_001012714 NM_001012729 NM_001013438 NM_001013439 NM_001013633 NM_001013637 NM_001013641 NM_001013652 NM_001013661 NM_001013671 NM_001013677 NM_001013693 NM_001013696 NM_001013701 NM_001013708 NM_001013713 NM_001013716 NM_001013726 NM_001014440 NM_001017392 NM_001017395 NM_001017916 NM_001017917 NM_001017918 NM_001017973 NM_001017974 NM_001018004 NM_001018006 NM_001018007 NM_001018020 NM_001018057 NM_001018058 NM_001024401 NM_001024610 NM_001024611 NM_001024843 NM_001025108 NM_001025193 NM_001025202 NM_001049 NM_001065 NM_001066 NM_001081 NM_001112 NM_001130 NM_001157 NM_001174 NM_001230 NM_001251 NM_001259 NM_001273 NM_001285 NM_001286 NM_001305 NM_001310 NM_001312 NM_001323 NM_001361 NM_001398 NM_001399 NM_001407 NM_001427 NM_001432 NM_001447 NM_001457 NM_001532 NM_001542 NM_001543 NM_001563 NM_001632 NM_001674 NM_001706 NM_001715 NM_001717 NM_001720 NM_001728 NM_001773 NM_001859 NM_001908 NM_001915 NM_001918 NM_001987 NM_002023 NM_002034 NM_002061 NM_002077 NM_002082 NM_002088 NM_002103 NM_002111 NM_002112 NM_002119 NM_002133 NM_002146 NM_002167 NM_002203 NM_002209 NM_002229 NM_002239 NM_002241 NM_002246 NM_002285 NM_002319 NM_002353 NM_002359 NM_002393 NM_002433 NM_002478 NM_002501 NM_002507 NM_002531 NM_002579 NM_002581 NM_002599 NM_002611 NM_002653 NM_002658 NM_002676 NM_002725 NM_002730 NM_002747 NM_002760 NM_002813 NM_002821 NM_002847 NM_002914 NM_002926 NM_002945 NM_002949 NM_002957 NM_002969 NM_002985 NM_003021 NM_003023 NM_003033 NM_003036 NM_003048 NM_003061 NM_003077 NM_003088 NM_003107 NM_003108 NM_003150 NM_003168 NM_003179 NM_003223 NM_003281 NM_003286 NM_003325 NM_003327 NM_003345 NM_003347 NM_003371 NM_003382 NM_003430 NM_003438 NM_003455 NM_003456 NM_003458 NM_003486 NM_003496 NM_003498 NM_003505 NM_003507 NM_003528 NM_003565 NM_003575 NM_003581 NM_003597 NM_003633 NM_003636 NM_003644 NM_003657 NM_003658 NM_003660 NM_003671 NM_003687 NM_003716 NM_003745 NM_003774 NM_003775 NM_003803 NM_003804 NM_003809 NM_003828 NM_003855 NM_003881 NM_003918 NM_003924 NM_003930 NM_003939 NM_003950 NM_003954 NM_003979 NM_004024 NM_004040 NM_004076 NM_004093 NM_004098 NM_004134 NM_004136 NM_004142 NM_004154 NM_004199 NM_004212 NM_004296 NM_004319 NM_004321 NM_004352 NM_004357 NM_004368 NM_004379 NM_004406 NM_004427 NM_004434 NM_004442 NM_004454 NM_004455 NM_004473 NM_004474 NM_004486 NM_004488 NM_004490 NM_004518 NM_004536 NM_004588 NM_004589 NM_004635 NM_004636 NM_004646 NM_004672 NM_004683 NM_004711 NM_004729 NM_004745 NM_004785 NM_004822 NM_004823 NM_004829 NM_004845 NM_004869 NM_004943 NM_004954 NM_004968 NM_004998 NM_005018 NM_005082 NM_005087 NM_005098 NM_005110 NM_005125 NM_005144 NM_005157 NM_005211 NM_005255 NM_005334 NM_005354 NM_005364 NM_005388 NM_005417 NM_005431 NM_005446 NM_005461 NM_005466 NM_005488 NM_005530 NM_005545 NM_005550 NM_005583 NM_005599 NM_005682 NM_005688 NM_005730 NM_005756 NM_005793 NM_005808 NM_005828 NM_005876 NM_005883 NM_005903 NM_005920 NM_005975 NM_006030 NM_006033 NM_006133 NM_006139 NM_006148 NM_006176 NM_006229 NM_006237 NM_006315 NM_006340 NM_006375 NM_006455 NM_006478 NM_006546 NM_006613 NM_006650 NM_006651 NM_006676 NM_006731 NM_006736 NM_006748 NM_006795 NM_006802 NM_006931 NM_006943 NM_007001 NM_007014 NM_007033 NM_007046 NM_007084 NM_007169 NM_007177 NM_007203 NM_007238 NM_007247 NM_007313 NM_007329 NM_007335 NM_007336 NM_007338 NM_007353 NM_009588 NM_012072 NM_012075 NM_012189 NM_012193 NM_012225 NM_012252 NM_012264 NM_012296 NM_012301 NM_012308 NM_012318 NM_012320 NM_012344 NM_012384 NM_012396 NM_012407 NM_012408 NM_012425 NM_012431 NM_012434 NM_013253 NM_013301 NM_013313 NM_013399 NM_013402 NM_013432 NM_013435 NM_013995 NM_014028 NM_014174 NM_014207 NM_014212 NM_014216 NM_014235 NM_014256 NM_014286 NM_014354 NM_014431 NM_014468 NM_014470 NM_014474 NM_014516 NM_014556 NM_014615 NM_014631 NM_014634 NM_014661 NM_014665 NM_014697 NM_014714 NM_014719 NM_014736 NM_014737 NM_014746 NM_014759 NM_014760 NM_014770 NM_014772 NM_014792 NM_014798 NM_014801 NM_014808 NM_014829 NM_014853 NM_014854 NM_014869 NM_014874 NM_014901 NM_014914 NM_014919 NM_014921 NM_014948 NM_015008 NM_015015 NM_015024 NM_015035 NM_015045 NM_015061 NM_015077 NM_015080 NM_015088 NM_015094 NM_015101 NM_015138 NM_015155 NM_015166 NM_015205 NM_015229 NM_015246 NM_015254 NM_015260 NM_015266 NM_015286 NM_015329 NM_015340 NM_015343 NM_015352 NM_015367 NM_015375 NM_015417 NM_015434 NM_015458 NM_015470 NM_015493 NM_015516 NM_015518 NM_015537 NM_015575 NM_015627 NM_015686 NM_015713 NM_015833 NM_015881 NM_015891 NM_015894 NM_015898 NM_015945 NM_015956 NM_015993 NM_015995 NM_016018 NM_016020 NM_016082 NM_016173 NM_016186 NM_016261 NM_016263 NM_016280 NM_016338 NM_016390 NM_016408 NM_016423 NM_016426 NM_016436 NM_016463 NM_016488 NM_016564 NM_016575 NM_016598 NM_016615 NM_016643 NM_017449 NM_017490 NM_017514 NM_017521 NM_017548 NM_017551 NM_017592 NM_017656 NM_017673 NM_017693 NM_017713 NM_017723 NM_017725 NM_017731 NM_017732 NM_017738 NM_017740 NM_017773 NM_017798 NM_017812 NM_017829 NM_017849 NM_017861 NM_017921 NM_017931 NM_017936 NM_017966 NM_018013 NM_018014 NM_018071 NM_018074 NM_018084 NM_018097 NM_018101 NM_018168 NM_018209 NM_018212 NM_018235 NM_018246 NM_018270 NM_018276 NM_018306 NM_018316 NM_018342 NM_018378 NM_018385 NM_018440 NM_018484 NM_018534 NM_018553 NM_018656 NM_018667 NM_018670 NM_018702 NM_018706 NM_018717 NM_018837 NM_018947 NM_018969 NM_018974 NM_019009 NM_019014 NM_019061 NM_019063 NM_019089 NM_019100 NM_019594 NM_019604 NM_019605 NM_019845 NM_019885 NM_019892 NM_019895 NM_020132 NM_020175 NM_020200 NM_020208 NM_020213 NM_020214 NM_020337 NM_020408 NM_020429 NM_020440 NM_020444 NM_020462 NM_020475 NM_020476 NM_020477 NM_020661 NM_020746 NM_020782 NM_020795 NM_020804 NM_020807 NM_020820 NM_020836 NM_020851 NM_020877 NM_020892 NM_020933 NM_020956 NM_020971 NM_021035 NM_021116 NM_021133 NM_021164 NM_021260 NM_021619 NM_021638 NM_021639 NM_021735 NM_021736 NM_021737 NM_021967 NM_021973 NM_022050 NM_022078 NM_022097 NM_022112 NM_022114 NM_022149 NM_022308 NM_022362 NM_022373 NM_022405 NM_022452 NM_022473 NM_022755 NM_022761 NM_022817 NM_022834 NM_022978 NM_023002 NM_023035 NM_023087 NM_023088 NM_023931 NM_024016 NM_024017 NM_024026 NM_024029 NM_024081 NM_024085 NM_024086 NM_024096 NM_024106 NM_024301 NM_024320 NM_024329 NM_024342 NM_024509 NM_024511 NM_024602 NM_024616 NM_024633 NM_024649 NM_024676 NM_024698 NM_024700 NM_024722 NM_024736 NM_024745 NM_024753 NM_024782 NM_024792 NM_024866 NM_024871 NM_024875 NM_024877 NM_024886 NM_024887 NM_024907 NM_024919 NM_024922 NM_024929 NM_024966 NM_025042 NM_025049 NM_025059 NM_025072 NM_025092 NM_025104 NM_025106 NM_025197 NM_025213 NM_025218 NM_025219 NM_025251 NM_030569 NM_030579 NM_030626 NM_030630 NM_030643 NM_030662 NM_030776 NM_030882 NM_030891 NM_030895 NM_030964 NM_030981 NM_031227 NM_031228 NM_031265 NM_031433 NM_031437 NM_031490 NM_031866 NM_031886 NM_031904 NM_031954 NM_032017 NM_032037 NM_032160 NM_032189 NM_032219 NM_032251 NM_032256 NM_032267 NM_032268 NM_032271 NM_032283 NM_032329 NM_032349 NM_032374 NM_032449 NM_032451 NM_032510 NM_032513 NM_032552 NM_032560 NM_032627 NM_032644 NM_032710 NM_032711 NM_032714 NM_032772 NM_032777 NM_032779 NM_032780 NM_032804 NM_032817 NM_032831 NM_032854 NM_032874 NM_032876 NM_032898 NM_032920 NM_032932 NM_032976 NM_032977 NM_032988 NM_033028 NM_033064 NM_033070 NM_033129 NM_033131 NM_033206 NM_033389 NM_033404 NM_033405 NM_033419 NM_033426 NM_033637 NM_033640 NM_052839 NM_052861 NM_052899 NM_052901 NM_052906 NM_052916 NM_052919 NM_052941 NM_052949 NM_052954 NM_052962 NM_052966 NM_052972 NM_052988 NM_054033 NM_057161 NM_058192 NM_058243 NM_078628 NM_079425 NM_080283 NM_080429 NM_080491 NM_080550 NM_080552 NM_080821 NM_080829 NM_080836 NM_080878 NM_130842 NM_130843 NM_130847 NM_133264 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_133371 NM_133444 NM_133456 NM_134264 NM_134442 NM_138298 NM_138299 NM_138368 NM_138415 NM_138494 NM_138553 NM_138559 NM_138572 NM_138706 NM_138732 NM_138734 NM_138931 NM_138939 NM_138940 NM_138962 NM_138969 NM_138983 NM_139016 NM_139021 NM_139028 NM_139030 NM_139158 NM_139202 NM_139238 NM_139276 NM_139284 NM_144490 NM_144577 NM_144613 NM_144615 NM_144638 NM_144640 NM_144671 NM_144687 NM_144964 NM_145064 NM_145071 NM_145245 NM_145257 NM_145276 NM_145285 NM_145637 NM_145660 NM_145699 NM_145728 NM_145798 NM_145804 NM_145809 NM_145868 NM_145869 NM_146387 NM_146388 NM_147150 NM_147192 NM_147780 NM_147781 NM_147782 NM_147783 NM_148169 NM_148172 NM_148173 NM_152235 NM_152236 NM_152237 NM_152264 NM_152287 NM_152341 NM_152372 NM_152384 NM_152444 NM_152458 NM_152472 NM_152475 NM_152487 NM_152496 NM_152509 NM_152571 NM_152574 NM_152595 NM_152619 NM_152681 NM_152684 NM_152686 NM_152724 NM_152757 NM_152776 NM_152783 NM_152831 NM_152869 NM_152880 NM_152881 NM_152882 NM_152883 NM_152906 NM_152933 NM_152934 NM_153012 NM_153029 NM_153220 NM_153238 NM_153263 NM_153334 NM_153343 NM_153345 NM_153350 NM_153375 NM_153451 NM_153482 NM_153619 NM_153717 NM_153768 NM_153809 NM_170710 NM_170773 NM_170774 NM_171982 NM_172130 NM_172225 NM_172234 NM_172386 NM_173073 NM_173079 NM_173092 NM_173179 NM_173344 NM_173354 NM_173464 NM_173477 NM_173484 NM_173509 NM_173561 NM_173564 NM_173588 NM_173607 NM_173621 NM_173637 NM_173647 NM_173653 NM_173658 NM_173680 NM_173728 NM_173795 NM_173805 NM_173831 NM_174892 NM_174911 NM_174914 NM_174937 NM_175571 NM_175575 NM_175609 NM_175709 NM_175736 NM_175866 NM_175884 NM_175888 NM_175895 NM_175901 NM_175908 NM_175913 NM_175922 NM_176095 NM_176789 NM_176811 NM_176816 NM_177401 NM_178122 NM_178129 NM_178170 NM_178172 NM_178336 NM_178441 NM_178448 NM_178507 NM_178518 NM_178526 NM_178536 NM_178556 NM_178814 NM_178831 NM_180981 NM_180982 NM_181265 NM_181304 NM_181305 NM_181306 NM_181307 NM_181309 NM_181310 NM_181349 NM_181471 NM_181491 NM_181670 NM_181704 NM_181774 NM_182314 NM_182477 NM_182482 NM_182501 NM_182526 NM_182565 NM_182584 NM_182594 NM_182605 NM_182634 NM_182665 NM_182705 NM_182740 NM_182752 NM_182812 NM_182895 NM_183047 NM_183048 NM_183385 NM_183393 NM_183394 NM_183397 NM_194259 NM_194260 NM_194261 NM_194278 NM_194283 NM_194290 NM_194310 NM_197956 NM_198040 NM_198074 NM_198086 NM_198157 NM_198207 NM_198243 NM_198274 NM_198277 NM_198291 NM_198403 NM_198452 NM_198457 NM_198486 NM_198526 NM_198532 NM_198537 NM_198545 NM_198549 NM_198589 NM_198590 NM_198591 NM_198595 NM_198596 NM_198686 NM_198690 NM_198693 NM_198851 NM_198900 NM_198938 NM_198939 NM_198940 NM_198969 NM_198970 NM_198990 NM_199044 NM_199047 NM_199121 NM_199131 NM_199262 NM_199297 NM_199298 NM_199415 NM_199424 NM_199427 NM_199454 NM_199462 NM_201252 NM_201267 NM_201277 NM_201348 NM_201432 NM_201433 NM_201524 NM_201525 NM_201526 NM_201628 NM_203304 NM_203348 NM_203373 NM_203374 NM_203426 NM_203434 NM_203436 NM_203452 NM_205861 NM_206809 NM_206810 NM_206811 NM_206812 NM_206813 NM_206814 NM_206835 NM_206894 NM_207112 NM_207125 NM_207129 NM_207323 NM_207324 NM_207348 NM_207370 NM_207379 NM_207389 NM_207405 NM_207411 NM_207412 NM_207451 NM_207453 NM_207454 NM_207462 NM_207463 NM_207488 NM_207505 NM_207510 NM_207518 NM_207581 NM_207644 NM_207645 NM_212558 NM_213566 NM_213568 NM_213596 NM_213606 NM_213662 XM_032278 XM_032996 XM_039393 XM_039676 XM_039733 XM_042833 XM_047610 XM_059318 XM_087353 XM_087386 XM_097580 XM_113763 XM_117408 XM_173132 XM_290401 XM_290540 XM_290842 XM_290923 XM_290936 XM_291064 XM_291154 XM_291947 XM_292717 XM_295213 XM_351948 XM_370696 XM_370849 XM_370878 XM_371097 XM_371214 XM_371286 XM_371369 XM_371486 XM_371488 XM_371820 XM_372128 XM_372268 XM_372273 XM_372716 XM_373561 XM_373704 XM_373744 XM_373765 XM_373810 XM_373952 XM_374086 XM_374177 XM_374315 XM_374498 XM_374769 XM_374781 XM_374973 XM_375007 XM_375090 XM_375292 XM_375373 XM_375491 XM_375602 XM_375646 XM_375669 XM_375929 XM_376062 XM_376099 XM_376165 XM_376257 XM_376284 XM_376303 XM_376679 XM_376720 XM_376727 XM_376902 XM_376905 XM_376981 XM_378202 XM_378236 XM_378239 XM_378273 XM_378329 XM_378491 XM_378529 XM_378546 XM_378639 XM_378650 XM_378655 XM_378667 XM_378843 XM_378860 XM_378914 XM_378981 XM_379029 XM_379075 XM_379118 XM_379146 XM_379206 XM_379355 XM_379363 XM_379402 XM_379406 XM_379458 XM_379459 XM_379501 XM_379512 XM_379541 XM_379586 XM_379635 XM_379664 XM_379665 XM_379668 XM_379696 XM_379877 XM_379920 XM_379927 XM_379933 XM_379967 XM_379979 XM_380120 XM_380121 XM_380135 XM_495888 XM_495939 XM_496239 XM_496328 XM_496358 XM_496367 XM_496436 XM_496467 XM_496547 XM_496618 XM_496876 XM_496976 XM_498465 XM_498479 XM_498484 XM_498490 XM_498511 XM_498555 XM_498559 XM_498578 XM_498632 XM_498649 XM_498680 XM_498681 XM_498684 XM_498690 XM_498739 XM_498814 XM_498825 XM_498857 XM_498917 XM_498919 XM_498932 XM_498933 XM_498972 XM_499003 XM_499009 XM_499022 XM_499047 XM_499050 XM_499057 XM_499147 XM_499151 XM_499155 XM_499170 XM_499265 XM_499293 XM_499309 XM_499505 XM_499577 XM_499595 XR_000184 XR_000263 XR_000266 XR_000268 XR_000294
Genes with multiple seed matches:
NM_000641 NM_000674 NM_000961 NM_001001685 NM_001001698 NM_001001873 NM_001004336 NM_001005303 NM_001008408 NM_001013671 NM_001014440 NM_001017395 NM_001049 NM_001285 NM_001447 NM_001918 NM_002034 NM_002760 NM_003107 NM_003150 NM_003456 NM_003507 NM_003924 NM_003950 NM_004352 NM_004455 NM_004845 NM_005098 NM_005828 NM_005883 NM_005920 NM_006148 NM_006455 NM_006546 NM_006943 NM_007335 NM_007336 NM_007338 NM_012296 NM_012434 NM_014470 NM_014631 NM_014665 NM_014759 NM_014801 NM_014919 NM_015008 NM_015035 NM_015155 NM_015229 NM_015246 NM_015254 NM_015266 NM_016263 NM_016488 NM_016564 NM_017723 NM_018013 NM_018440 NM_019014 NM_019845 NM_020429 NM_020956 NM_021973 NM_022050 NM_022308 NM_023931 NM_024081 NM_024676 NM_025042 NM_025197 NM_030569 NM_030662 NM_031904 NM_032268 NM_032710 NM_032817 NM_052906 NM_080491 NM_130847 NM_133332 NM_133333 NM_138415 NM_138706 NM_139276 NM_145064 NM_152684 NM_152783 NM_153029 NM_153220 NM_153334 NM_173564 NM_173805 NM_174911 NM_175901 NM_176095 NM_178129 NM_178336 NM_180981 NM_180982 NM_181304 NM_181305 NM_181306 NM_181307 NM_181349 NM_182895 NM_194310 NM_198074 NM_203434 NM_213568 NM_213662 XM_373561 XM_375090 XM_375491 XM_376981 XM_378329 XM_378639 XM_378655 XM_378914 XM_379118 XM_379406 XM_379459 XM_495888 XM_496618 XM_496976 XM_498559 XM_498578 XM_498933 XM_499147 XR_000263
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)