VIRsiRNAdb

Predicted off-targets seeds for siRNA "gcgucuagccauggcguua" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1102.
Total Genes with multiple seed matches: 90.
Genes with at least one seed match: NM_000118 NM_000136 NM_000140 NM_000199 NM_000209 NM_000219 NM_000247 NM_000268 NM_000296 NM_000303 NM_000348 NM_000376 NM_000451 NM_000462 NM_000486 NM_000511 NM_000520 NM_000611 NM_000618 NM_000629 NM_000693 NM_000696 NM_000725 NM_000815 NM_000842 NM_000872 NM_000877 NM_000878 NM_000903 NM_000908 NM_000945 NM_001001418 NM_001001481 NM_001001482 NM_001001549 NM_001001550 NM_001001555 NM_001001661 NM_001001677 NM_001001679 NM_001001691 NM_001001709 NM_001001716 NM_001001795 NM_001002019 NM_001002020 NM_001002847 NM_001003399 NM_001003674 NM_001003675 NM_001003800 NM_001003891 NM_001004302 NM_001004342 NM_001004433 NM_001005387 NM_001005407 NM_001005474 NM_001005611 NM_001007156 NM_001007176 NM_001007225 NM_001007237 NM_001007254 NM_001007257 NM_001007466 NM_001007471 NM_001007538 NM_001007543 NM_001008215 NM_001008408 NM_001008707 NM_001008745 NM_001009880 NM_001009944 NM_001010846 NM_001010866 NM_001010867 NM_001010874 NM_001010898 NM_001010909 NM_001010910 NM_001011664 NM_001011718 NM_001012418 NM_001012503 NM_001012515 NM_001012631 NM_001012632 NM_001012633 NM_001012634 NM_001012635 NM_001012636 NM_001012709 NM_001012718 NM_001012729 NM_001012733 NM_001012734 NM_001012957 NM_001012977 NM_001012981 NM_001013622 NM_001013676 NM_001013685 NM_001013693 NM_001013708 NM_001013710 NM_001013713 NM_001013720 NM_001013839 NM_001014380 NM_001014431 NM_001014432 NM_001017405 NM_001017528 NM_001017529 NM_001017530 NM_001017535 NM_001017980 NM_001018055 NM_001018065 NM_001018066 NM_001024596 NM_001024657 NM_001024676 NM_001024677 NM_001024808 NM_001024843 NM_001025100 NM_001025233 NM_001049 NM_001080 NM_001093 NM_001096 NM_001116 NM_001121 NM_001148 NM_001234 NM_001235 NM_001254 NM_001299 NM_001305 NM_001316 NM_001356 NM_001382 NM_001395 NM_001419 NM_001440 NM_001498 NM_001534 NM_001537 NM_001542 NM_001619 NM_001668 NM_001693 NM_001695 NM_001709 NM_001718 NM_001759 NM_001761 NM_001797 NM_001831 NM_001835 NM_001903 NM_001933 NM_001974 NM_001996 NM_002011 NM_002020 NM_002075 NM_002086 NM_002098 NM_002099 NM_002105 NM_002111 NM_002180 NM_002221 NM_002235 NM_002265 NM_002296 NM_002353 NM_002359 NM_002379 NM_002407 NM_002414 NM_002535 NM_002574 NM_002648 NM_002653 NM_002711 NM_002817 NM_002872 NM_002946 NM_002970 NM_003021 NM_003023 NM_003042 NM_003076 NM_003107 NM_003108 NM_003131 NM_003132 NM_003157 NM_003189 NM_003200 NM_003246 NM_003255 NM_003277 NM_003320 NM_003345 NM_003347 NM_003388 NM_003409 NM_003412 NM_003439 NM_003468 NM_003575 NM_003615 NM_003617 NM_003644 NM_003664 NM_003681 NM_003682 NM_003687 NM_003751 NM_003822 NM_003824 NM_003840 NM_003870 NM_003901 NM_003918 NM_003938 NM_003943 NM_003966 NM_003970 NM_003981 NM_004073 NM_004093 NM_004095 NM_004129 NM_004136 NM_004200 NM_004205 NM_004213 NM_004221 NM_004263 NM_004285 NM_004305 NM_004316 NM_004338 NM_004391 NM_004399 NM_004401 NM_004433 NM_004434 NM_004472 NM_004474 NM_004513 NM_004518 NM_004549 NM_004562 NM_004564 NM_004585 NM_004619 NM_004649 NM_004707 NM_004715 NM_004730 NM_004738 NM_004745 NM_004762 NM_004782 NM_004824 NM_004883 NM_004893 NM_004907 NM_004956 NM_004962 NM_005018 NM_005057 NM_005082 NM_005163 NM_005168 NM_005184 NM_005187 NM_005197 NM_005202 NM_005207 NM_005224 NM_005268 NM_005277 NM_005297 NM_005311 NM_005324 NM_005342 NM_005440 NM_005544 NM_005602 NM_005607 NM_005619 NM_005636 NM_005650 NM_005653 NM_005782 NM_005789 NM_005806 NM_005828 NM_005829 NM_005840 NM_005858 NM_005859 NM_005882 NM_005897 NM_005902 NM_005928 NM_005957 NM_005986 NM_005996 NM_006018 NM_006065 NM_006122 NM_006160 NM_006251 NM_006310 NM_006315 NM_006371 NM_006395 NM_006404 NM_006413 NM_006480 NM_006504 NM_006526 NM_006548 NM_006578 NM_006628 NM_006661 NM_006674 NM_006675 NM_006738 NM_006822 NM_006836 NM_006852 NM_006888 NM_006936 NM_007030 NM_007084 NM_007098 NM_007171 NM_007174 NM_007200 NM_007203 NM_007271 NM_007274 NM_007365 NM_007373 NM_009588 NM_012075 NM_012102 NM_012118 NM_012121 NM_012173 NM_012226 NM_012227 NM_012231 NM_012256 NM_012279 NM_012288 NM_012301 NM_012304 NM_012398 NM_012479 NM_013279 NM_013282 NM_013296 NM_013305 NM_013312 NM_013325 NM_013377 NM_013399 NM_013433 NM_013449 NM_013981 NM_013982 NM_013983 NM_013987 NM_013988 NM_014011 NM_014147 NM_014236 NM_014246 NM_014286 NM_014360 NM_014418 NM_014431 NM_014478 NM_014503 NM_014556 NM_014562 NM_014569 NM_014583 NM_014631 NM_014637 NM_014641 NM_014665 NM_014668 NM_014681 NM_014703 NM_014730 NM_014765 NM_014770 NM_014792 NM_014835 NM_014844 NM_014854 NM_014934 NM_014956 NM_014959 NM_014967 NM_014997 NM_015002 NM_015015 NM_015023 NM_015037 NM_015044 NM_015051 NM_015074 NM_015079 NM_015088 NM_015132 NM_015162 NM_015171 NM_015192 NM_015219 NM_015224 NM_015227 NM_015259 NM_015264 NM_015266 NM_015267 NM_015288 NM_015339 NM_015345 NM_015366 NM_015381 NM_015417 NM_015438 NM_015444 NM_015463 NM_015527 NM_015553 NM_015557 NM_015578 NM_015604 NM_015651 NM_015678 NM_015683 NM_015866 NM_015889 NM_015981 NM_015995 NM_016076 NM_016170 NM_016172 NM_016194 NM_016206 NM_016240 NM_016281 NM_016318 NM_016319 NM_016320 NM_016376 NM_016412 NM_016417 NM_016418 NM_016433 NM_016522 NM_016542 NM_016544 NM_016545 NM_016569 NM_016647 NM_016824 NM_016831 NM_017450 NM_017456 NM_017495 NM_017519 NM_017527 NM_017592 NM_017594 NM_017640 NM_017649 NM_017701 NM_017719 NM_017723 NM_017740 NM_017751 NM_017797 NM_017804 NM_017814 NM_017858 NM_017896 NM_017919 NM_017921 NM_017924 NM_017949 NM_017951 NM_017966 NM_017993 NM_018027 NM_018059 NM_018069 NM_018181 NM_018195 NM_018215 NM_018224 NM_018266 NM_018286 NM_018299 NM_018312 NM_018332 NM_018366 NM_018416 NM_018462 NM_018469 NM_018479 NM_018553 NM_018660 NM_018662 NM_018702 NM_018713 NM_018947 NM_018959 NM_019020 NM_019063 NM_019064 NM_019071 NM_019106 NM_019593 NM_019594 NM_019857 NM_019859 NM_019860 NM_019885 NM_019886 NM_019903 NM_020133 NM_020144 NM_020150 NM_020184 NM_020188 NM_020245 NM_020326 NM_020385 NM_020416 NM_020443 NM_020528 NM_020550 NM_020689 NM_020732 NM_020738 NM_020746 NM_020766 NM_020773 NM_020776 NM_020795 NM_020825 NM_020836 NM_020886 NM_020894 NM_020909 NM_020918 NM_020927 NM_020931 NM_020933 NM_020952 NM_020960 NM_020977 NM_020993 NM_021035 NM_021064 NM_021098 NM_021116 NM_021127 NM_021155 NM_021164 NM_021242 NM_021248 NM_021619 NM_021635 NM_021638 NM_021729 NM_021813 NM_021961 NM_022046 NM_022049 NM_022082 NM_022087 NM_022114 NM_022134 NM_022170 NM_022478 NM_022484 NM_022490 NM_022497 NM_022567 NM_022730 NM_022744 NM_022753 NM_022759 NM_022777 NM_022842 NM_022898 NM_022963 NM_022975 NM_023002 NM_023071 NM_023927 NM_024019 NM_024077 NM_024296 NM_024332 NM_024342 NM_024513 NM_024527 NM_024607 NM_024617 NM_024649 NM_024676 NM_024719 NM_024735 NM_024736 NM_024742 NM_024749 NM_024782 NM_024859 NM_024891 NM_024910 NM_024940 NM_024952 NM_024971 NM_025019 NM_025155 NM_025176 NM_025201 NM_025215 NM_030626 NM_030627 NM_030645 NM_030653 NM_030655 NM_030661 NM_030665 NM_030762 NM_030776 NM_030795 NM_030806 NM_031215 NM_031265 NM_031419 NM_031432 NM_031445 NM_031451 NM_031476 NM_031866 NM_031922 NM_031992 NM_032015 NM_032046 NM_032108 NM_032109 NM_032116 NM_032122 NM_032145 NM_032175 NM_032192 NM_032255 NM_032256 NM_032289 NM_032294 NM_032319 NM_032389 NM_032421 NM_032432 NM_032592 NM_032641 NM_032706 NM_032711 NM_032727 NM_032737 NM_032780 NM_032804 NM_032831 NM_032859 NM_032873 NM_032882 NM_032899 NM_032900 NM_032968 NM_032969 NM_033064 NM_033129 NM_033131 NM_033161 NM_033337 NM_033624 NM_033626 NM_033631 NM_048368 NM_052840 NM_052847 NM_052861 NM_052864 NM_052876 NM_052898 NM_052926 NM_053056 NM_057174 NM_080605 NM_080677 NM_080723 NM_080730 NM_080731 NM_080872 NM_080928 NM_130435 NM_130470 NM_130471 NM_130472 NM_130473 NM_130474 NM_130475 NM_130476 NM_130838 NM_130839 NM_133459 NM_133463 NM_133634 NM_133635 NM_138298 NM_138299 NM_138350 NM_138372 NM_138375 NM_138401 NM_138415 NM_138434 NM_138576 NM_138609 NM_138610 NM_138640 NM_138769 NM_138793 NM_138969 NM_139071 NM_139132 NM_139162 NM_139278 NM_139280 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351 NM_144490 NM_144498 NM_144570 NM_144597 NM_144599 NM_144601 NM_144607 NM_144611 NM_144669 NM_144682 NM_144692 NM_144767 NM_144949 NM_144985 NM_144994 NM_145054 NM_145102 NM_145245 NM_145260 NM_145303 NM_145328 NM_145650 NM_145731 NM_145759 NM_147150 NM_148571 NM_148886 NM_148960 NM_152235 NM_152253 NM_152301 NM_152311 NM_152341 NM_152363 NM_152367 NM_152376 NM_152407 NM_152436 NM_152458 NM_152461 NM_152470 NM_152482 NM_152488 NM_152550 NM_152569 NM_152570 NM_152594 NM_152624 NM_152625 NM_152665 NM_152680 NM_152760 NM_152939 NM_153031 NM_153035 NM_153320 NM_153442 NM_153613 NM_153619 NM_153631 NM_153632 NM_153646 NM_153647 NM_153648 NM_153708 NM_153717 NM_153831 NM_170682 NM_170683 NM_170711 NM_170731 NM_170732 NM_170733 NM_170734 NM_170735 NM_170740 NM_170751 NM_170752 NM_171825 NM_172206 NM_172217 NM_172234 NM_172367 NM_173357 NM_173468 NM_173491 NM_173510 NM_173542 NM_173545 NM_173588 NM_173651 NM_173657 NM_173681 NM_173803 NM_174872 NM_174873 NM_175055 NM_175058 NM_175569 NM_175729 NM_175859 NM_175863 NM_175907 NM_175931 NM_175932 NM_176811 NM_176815 NM_176863 NM_177436 NM_177972 NM_178326 NM_178426 NM_178427 NM_178519 NM_178557 NM_178826 NM_180991 NM_181333 NM_181336 NM_181340 NM_181341 NM_181351 NM_181353 NM_181442 NM_181481 NM_181482 NM_181483 NM_181489 NM_181492 NM_181505 NM_181553 NM_181554 NM_181555 NM_181696 NM_181697 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181862 NM_181863 NM_181864 NM_181865 NM_181866 NM_181876 NM_182487 NM_182578 NM_182712 NM_182734 NM_182812 NM_183040 NM_183041 NM_183420 NM_183421 NM_183425 NM_194259 NM_194260 NM_194261 NM_194290 NM_194292 NM_194298 NM_194313 NM_194428 NM_194442 NM_198155 NM_198157 NM_198181 NM_198266 NM_198271 NM_198442 NM_198450 NM_198545 NM_198553 NM_198595 NM_198830 NM_198968 NM_199071 NM_199076 NM_199129 NM_199133 NM_199413 NM_199414 NM_199454 NM_201432 NM_201433 NM_201591 NM_201592 NM_203304 NM_203307 NM_203316 NM_203329 NM_203330 NM_203331 NM_203339 NM_203506 NM_205860 NM_206853 NM_206854 NM_206855 NM_206900 NM_206901 NM_206902 NM_206907 NM_206918 NM_206920 NM_206944 NM_206945 NM_206946 NM_206947 NM_207324 NM_207331 NM_207367 NM_207370 NM_207411 NM_207426 NM_207429 NM_207446 NM_207462 NM_207467 NM_207484 NM_207581 NM_207646 NM_207647 NM_212555 NM_213566 NM_213589 NM_213647 NM_213723 NM_213726 XM_028810 XM_031553 XM_031689 XM_032901 XM_038150 XM_039570 XM_040592 XM_042698 XM_042833 XM_044062 XM_051017 XM_059318 XM_085831 XM_087386 XM_097977 XM_166203 XM_208333 XM_211251 XM_290737 XM_290809 XM_291105 XM_292779 XM_294450 XM_294765 XM_370648 XM_370928 XM_371181 XM_371214 XM_371354 XM_371461 XM_372004 XM_372090 XM_372143 XM_372193 XM_372579 XM_373290 XM_373578 XM_373606 XM_373744 XM_373786 XM_374078 XM_374414 XM_374589 XM_375333 XM_375357 XM_376018 XM_376303 XM_376587 XM_376720 XM_378299 XM_378473 XM_378573 XM_378617 XM_378628 XM_378738 XM_378758 XM_378795 XM_378858 XM_378860 XM_378883 XM_378914 XM_379075 XM_379106 XM_379114 XM_379145 XM_379189 XM_379452 XM_379456 XM_379458 XM_379518 XM_379535 XM_379619 XM_379702 XM_379840 XM_379967 XM_380143 XM_380160 XM_495908 XM_495918 XM_496081 XM_496088 XM_496103 XM_496115 XM_496877 XM_497000 XM_498464 XM_498624 XM_498649 XM_498715 XM_498724 XM_498869 XM_498878 XM_498884 XM_498898 XM_498933 XM_499051 XM_499093 XM_499164 XM_499182 XM_499594	Genes with multiple seed matches: NM_000199 NM_000268 NM_000451 NM_000520 NM_001003674 NM_001003675 NM_001009880 NM_001010910 NM_001013676 NM_001013685 NM_001024677 NM_001024808 NM_002086 NM_003347 NM_003468 NM_003644 NM_004263 NM_004338 NM_004399 NM_004649 NM_004745 NM_005082 NM_005184 NM_005828 NM_005902 NM_007203 NM_012102 NM_012288 NM_012479 NM_014286 NM_014959 NM_015259 NM_015264 NM_015345 NM_015557 NM_015981 NM_016418 NM_016522 NM_016831 NM_017751 NM_017951 NM_018947 NM_019885 NM_020993 NM_021155 NM_022049 NM_022170 NM_030626 NM_030653 NM_030655 NM_031265 NM_031992 NM_033626 NM_052847 NM_052861 NM_053056 NM_133463 NM_152458 NM_171825 NM_172367 NM_173657 NM_181481 NM_181482 NM_181483 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_194290 NM_198155 NM_198157 NM_201432 NM_201433 NM_203506 NM_207367 NM_207484 NM_213723 XM_370928 XM_373290 XM_379145 XM_379458 XM_495908 XM_498649 XM_499164 XM_499182

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA