VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"uugaguauccugcucgagc"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1471
.
Total Genes with multiple seed matches:
109
.
Genes with at least one seed match:
NM_000026 NM_000033 NM_000037 NM_000051 NM_000125 NM_000214 NM_000227 NM_000230 NM_000246 NM_000252 NM_000260 NM_000332 NM_000367 NM_000368 NM_000389 NM_000401 NM_000402 NM_000411 NM_000451 NM_000497 NM_000498 NM_000525 NM_000542 NM_000545 NM_000546 NM_000581 NM_000588 NM_000598 NM_000599 NM_000611 NM_000628 NM_000635 NM_000690 NM_000695 NM_000742 NM_000780 NM_000784 NM_000812 NM_000826 NM_000832 NM_000841 NM_000843 NM_000845 NM_000870 NM_000934 NM_000962 NM_000991 NM_001001412 NM_001001418 NM_001001433 NM_001001434 NM_001001502 NM_001001549 NM_001001550 NM_001001555 NM_001001664 NM_001001685 NM_001001686 NM_001001698 NM_001001707 NM_001001723 NM_001001732 NM_001001795 NM_001001890 NM_001002034 NM_001002231 NM_001002232 NM_001002261 NM_001002262 NM_001002799 NM_001002836 NM_001002840 NM_001003399 NM_001003406 NM_001003665 NM_001003792 NM_001003793 NM_001003794 NM_001003809 NM_001004125 NM_001004298 NM_001004321 NM_001004328 NM_001004352 NM_001004354 NM_001004441 NM_001004720 NM_001004722 NM_001005209 NM_001005360 NM_001005361 NM_001005362 NM_001005387 NM_001005388 NM_001005404 NM_001005409 NM_001005473 NM_001005502 NM_001005609 NM_001005611 NM_001005737 NM_001006615 NM_001006616 NM_001006641 NM_001006642 NM_001006643 NM_001007088 NM_001007188 NM_001007279 NM_001007538 NM_001007560 NM_001008234 NM_001008396 NM_001008404 NM_001008408 NM_001008493 NM_001008707 NM_001008745 NM_001009185 NM_001009913 NM_001009939 NM_001009957 NM_001010000 NM_001010861 NM_001010866 NM_001010867 NM_001010874 NM_001010882 NM_001010891 NM_001010926 NM_001011552 NM_001011649 NM_001011724 NM_001011725 NM_001012361 NM_001012426 NM_001012427 NM_001012659 NM_001012727 NM_001012957 NM_001013000 NM_001013005 NM_001013398 NM_001013404 NM_001013635 NM_001013685 NM_001013697 NM_001013708 NM_001013712 NM_001013723 NM_001013748 NM_001014431 NM_001014432 NM_001014831 NM_001014832 NM_001014833 NM_001014834 NM_001014835 NM_001015047 NM_001015881 NM_001017915 NM_001017927 NM_001017930 NM_001017963 NM_001017995 NM_001017998 NM_001018050 NM_001018051 NM_001018052 NM_001018064 NM_001018104 NM_001018111 NM_001023565 NM_001024592 NM_001024608 NM_001024654 NM_001024808 NM_001024843 NM_001035 NM_001081 NM_001092 NM_001093 NM_001094 NM_001116 NM_001119 NM_001192 NM_001258 NM_001286 NM_001287 NM_001291 NM_001319 NM_001324 NM_001347 NM_001360 NM_001365 NM_001374 NM_001383 NM_001390 NM_001399 NM_001419 NM_001420 NM_001428 NM_001451 NM_001490 NM_001493 NM_001519 NM_001543 NM_001557 NM_001558 NM_001560 NM_001615 NM_001627 NM_001649 NM_001754 NM_001768 NM_001770 NM_001829 NM_001846 NM_001848 NM_001874 NM_001904 NM_001932 NM_001942 NM_001980 NM_001991 NM_002052 NM_002081 NM_002103 NM_002105 NM_002136 NM_002300 NM_002319 NM_002357 NM_002359 NM_002371 NM_002420 NM_002422 NM_002448 NM_002540 NM_002579 NM_002610 NM_002611 NM_002644 NM_002653 NM_002688 NM_002725 NM_002751 NM_002777 NM_002834 NM_002836 NM_002850 NM_002938 NM_002939 NM_002957 NM_002960 NM_002994 NM_002996 NM_003004 NM_003016 NM_003025 NM_003030 NM_003034 NM_003035 NM_003036 NM_003038 NM_003042 NM_003043 NM_003044 NM_003045 NM_003056 NM_003085 NM_003098 NM_003102 NM_003137 NM_003168 NM_003189 NM_003190 NM_003200 NM_003212 NM_003266 NM_003281 NM_003302 NM_003369 NM_003373 NM_003505 NM_003528 NM_003575 NM_003581 NM_003590 NM_003605 NM_003624 NM_003636 NM_003681 NM_003758 NM_003763 NM_003808 NM_003811 NM_003834 NM_003835 NM_003896 NM_003926 NM_003998 NM_004036 NM_004089 NM_004090 NM_004094 NM_004101 NM_004109 NM_004125 NM_004132 NM_004133 NM_004172 NM_004184 NM_004200 NM_004227 NM_004273 NM_004311 NM_004326 NM_004331 NM_004339 NM_004343 NM_004350 NM_004360 NM_004364 NM_004380 NM_004385 NM_004397 NM_004417 NM_004420 NM_004430 NM_004433 NM_004434 NM_004442 NM_004449 NM_004456 NM_004472 NM_004518 NM_004535 NM_004561 NM_004567 NM_004610 NM_004614 NM_004617 NM_004620 NM_004629 NM_004660 NM_004667 NM_004711 NM_004739 NM_004742 NM_004745 NM_004746 NM_004778 NM_004779 NM_004782 NM_004798 NM_004807 NM_004819 NM_004921 NM_004945 NM_004947 NM_004991 NM_005076 NM_005088 NM_005098 NM_005109 NM_005117 NM_005134 NM_005149 NM_005160 NM_005163 NM_005173 NM_005184 NM_005188 NM_005220 NM_005234 NM_005276 NM_005308 NM_005311 NM_005312 NM_005329 NM_005348 NM_005373 NM_005380 NM_005397 NM_005430 NM_005446 NM_005447 NM_005458 NM_005461 NM_005506 NM_005540 NM_005541 NM_005551 NM_005567 NM_005585 NM_005597 NM_005598 NM_005599 NM_005604 NM_005647 NM_005675 NM_005678 NM_005740 NM_005751 NM_005783 NM_005856 NM_005863 NM_005877 NM_005884 NM_005898 NM_005920 NM_005933 NM_005935 NM_005957 NM_005964 NM_005984 NM_005985 NM_005986 NM_005990 NM_005996 NM_006011 NM_006037 NM_006062 NM_006087 NM_006091 NM_006105 NM_006139 NM_006180 NM_006206 NM_006221 NM_006276 NM_006282 NM_006290 NM_006301 NM_006361 NM_006371 NM_006386 NM_006412 NM_006418 NM_006424 NM_006454 NM_006485 NM_006499 NM_006500 NM_006505 NM_006522 NM_006534 NM_006538 NM_006553 NM_006591 NM_006610 NM_006614 NM_006620 NM_006646 NM_006693 NM_006711 NM_006757 NM_006763 NM_006819 NM_006856 NM_006861 NM_006877 NM_006884 NM_006925 NM_006936 NM_006962 NM_007030 NM_007038 NM_007044 NM_007070 NM_007073 NM_007086 NM_007144 NM_007161 NM_007174 NM_007175 NM_007274 NM_007283 NM_007327 NM_007345 NM_007350 NM_007353 NM_007355 NM_007371 NM_009586 NM_009588 NM_012079 NM_012102 NM_012119 NM_012137 NM_012171 NM_012174 NM_012179 NM_012186 NM_012205 NM_012232 NM_012255 NM_012271 NM_012275 NM_012288 NM_012290 NM_012316 NM_012334 NM_012398 NM_012468 NM_012479 NM_013242 NM_013246 NM_013301 NM_013309 NM_013312 NM_013313 NM_013325 NM_013336 NM_013372 NM_013385 NM_013433 NM_013434 NM_014000 NM_014048 NM_014157 NM_014189 NM_014190 NM_014212 NM_014236 NM_014240 NM_014282 NM_014285 NM_014299 NM_014300 NM_014321 NM_014354 NM_014400 NM_014408 NM_014424 NM_014442 NM_014448 NM_014478 NM_014504 NM_014564 NM_014587 NM_014602 NM_014615 NM_014631 NM_014646 NM_014656 NM_014674 NM_014677 NM_014725 NM_014755 NM_014772 NM_014773 NM_014792 NM_014811 NM_014820 NM_014835 NM_014837 NM_014850 NM_014873 NM_014891 NM_014905 NM_014910 NM_014919 NM_014988 NM_015017 NM_015020 NM_015044 NM_015071 NM_015075 NM_015077 NM_015085 NM_015088 NM_015090 NM_015093 NM_015094 NM_015101 NM_015111 NM_015113 NM_015116 NM_015129 NM_015141 NM_015144 NM_015155 NM_015173 NM_015178 NM_015191 NM_015193 NM_015202 NM_015205 NM_015229 NM_015235 NM_015251 NM_015256 NM_015266 NM_015271 NM_015278 NM_015288 NM_015296 NM_015310 NM_015329 NM_015340 NM_015347 NM_015353 NM_015355 NM_015368 NM_015374 NM_015380 NM_015381 NM_015392 NM_015399 NM_015401 NM_015404 NM_015411 NM_015477 NM_015526 NM_015545 NM_015549 NM_015557 NM_015564 NM_015575 NM_015621 NM_015683 NM_015686 NM_015711 NM_015892 NM_015896 NM_015957 NM_015995 NM_016022 NM_016083 NM_016114 NM_016173 NM_016202 NM_016206 NM_016233 NM_016249 NM_016264 NM_016331 NM_016355 NM_016424 NM_016426 NM_016456 NM_016551 NM_016569 NM_016577 NM_016596 NM_016611 NM_016652 NM_017436 NM_017437 NM_017449 NM_017450 NM_017550 NM_017565 NM_017588 NM_017645 NM_017682 NM_017693 NM_017714 NM_017723 NM_017754 NM_017824 NM_017828 NM_017873 NM_017931 NM_017968 NM_017999 NM_018019 NM_018060 NM_018069 NM_018082 NM_018086 NM_018152 NM_018188 NM_018212 NM_018249 NM_018292 NM_018347 NM_018393 NM_018409 NM_018410 NM_018440 NM_018498 NM_018557 NM_018658 NM_018660 NM_018662 NM_018717 NM_018718 NM_018847 NM_018952 NM_018991 NM_018995 NM_019002 NM_019020 NM_019072 NM_019074 NM_019085 NM_019857 NM_020038 NM_020064 NM_020134 NM_020168 NM_020182 NM_020237 NM_020374 NM_020376 NM_020378 NM_020385 NM_020451 NM_020475 NM_020476 NM_020477 NM_020524 NM_020528 NM_020530 NM_020531 NM_020554 NM_020631 NM_020649 NM_020651 NM_020710 NM_020761 NM_020762 NM_020764 NM_020766 NM_020770 NM_020773 NM_020792 NM_020796 NM_020828 NM_020845 NM_020856 NM_020857 NM_020909 NM_020918 NM_020956 NM_020967 NM_020982 NM_020993 NM_021079 NM_021089 NM_021096 NM_021115 NM_021116 NM_021117 NM_021165 NM_021168 NM_021180 NM_021181 NM_021200 NM_021569 NM_021620 NM_021639 NM_021735 NM_021736 NM_021737 NM_021794 NM_021813 NM_021814 NM_021940 NM_021959 NM_021961 NM_021962 NM_022081 NM_022082 NM_022153 NM_022369 NM_022438 NM_022439 NM_022440 NM_022469 NM_022497 NM_022566 NM_022567 NM_022764 NM_022784 NM_022836 NM_022837 NM_022844 NM_022895 NM_022912 NM_023008 NM_023079 NM_023946 NM_023947 NM_024025 NM_024052 NM_024098 NM_024103 NM_024307 NM_024329 NM_024492 NM_024527 NM_024544 NM_024551 NM_024554 NM_024599 NM_024618 NM_024643 NM_024667 NM_024733 NM_024736 NM_024738 NM_024761 NM_024774 NM_024782 NM_024798 NM_024818 NM_024859 NM_024877 NM_024893 NM_024908 NM_024930 NM_024955 NM_024989 NM_025002 NM_025059 NM_025078 NM_025090 NM_025197 NM_025218 NM_025237 NM_025245 NM_025250 NM_025268 NM_030576 NM_030594 NM_030630 NM_030643 NM_030777 NM_030881 NM_030919 NM_030929 NM_030964 NM_030981 NM_031157 NM_031211 NM_031275 NM_031416 NM_031417 NM_031442 NM_031445 NM_031462 NM_031469 NM_031890 NM_031921 NM_031925 NM_032042 NM_032044 NM_032052 NM_032134 NM_032179 NM_032189 NM_032207 NM_032222 NM_032233 NM_032236 NM_032242 NM_032258 NM_032262 NM_032271 NM_032281 NM_032287 NM_032298 NM_032310 NM_032327 NM_032329 NM_032415 NM_032432 NM_032499 NM_032521 NM_032546 NM_032554 NM_032587 NM_032683 NM_032706 NM_032711 NM_032726 NM_032801 NM_032818 NM_032854 NM_032899 NM_032905 NM_032932 NM_032957 NM_032975 NM_032980 NM_033084 NM_033088 NM_033100 NM_033106 NM_033129 NM_033181 NM_033357 NM_033386 NM_033387 NM_033393 NM_033397 NM_033419 NM_033505 NM_033626 NM_052821 NM_052831 NM_052858 NM_052874 NM_052876 NM_052896 NM_052898 NM_052901 NM_052928 NM_052966 NM_053045 NM_053280 NM_057177 NM_058192 NM_058246 NM_078467 NM_079834 NM_080429 NM_080591 NM_080594 NM_080605 NM_080618 NM_080621 NM_080840 NM_080841 NM_080862 NM_080867 NM_080872 NM_080927 NM_130446 NM_130459 NM_130465 NM_130807 NM_130830 NM_130848 NM_130853 NM_130854 NM_130855 NM_133175 NM_133176 NM_133263 NM_133279 NM_133330 NM_133331 NM_133332 NM_133333 NM_133335 NM_133336 NM_133371 NM_133373 NM_133443 NM_133444 NM_133448 NM_133627 NM_133628 NM_133630 NM_134264 NM_134268 NM_134433 NM_138287 NM_138292 NM_138298 NM_138338 NM_138370 NM_138391 NM_138457 NM_138554 NM_138556 NM_138567 NM_138572 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_138640 NM_138983 NM_138993 NM_139015 NM_139021 NM_139321 NM_144498 NM_144567 NM_144578 NM_144586 NM_144588 NM_144589 NM_144623 NM_144640 NM_144649 NM_144671 NM_144682 NM_144691 NM_144964 NM_145006 NM_145035 NM_145178 NM_145241 NM_145255 NM_145265 NM_145284 NM_145285 NM_145323 NM_145324 NM_145342 NM_145646 NM_145660 NM_145685 NM_145696 NM_145735 NM_145799 NM_145803 NM_145807 NM_147147 NM_147161 NM_147171 NM_147185 NM_147192 NM_147196 NM_148171 NM_148887 NM_152237 NM_152267 NM_152416 NM_152425 NM_152439 NM_152478 NM_152493 NM_152495 NM_152540 NM_152544 NM_152569 NM_152588 NM_152598 NM_152635 NM_152680 NM_152689 NM_152695 NM_152840 NM_152841 NM_152842 NM_152891 NM_152998 NM_153022 NM_153025 NM_153032 NM_153033 NM_153041 NM_153231 NM_153239 NM_153271 NM_153337 NM_153338 NM_153344 NM_153346 NM_153348 NM_153350 NM_153375 NM_153462 NM_153463 NM_153480 NM_153481 NM_153482 NM_153483 NM_153498 NM_153611 NM_153613 NM_153812 NM_156036 NM_156037 NM_170741 NM_170742 NM_170781 NM_171827 NM_171999 NM_172087 NM_172088 NM_172089 NM_172130 NM_172225 NM_172239 NM_172367 NM_172369 NM_173055 NM_173056 NM_173057 NM_173058 NM_173065 NM_173156 NM_173170 NM_173473 NM_173477 NM_173501 NM_173528 NM_173535 NM_173547 NM_173583 NM_173590 NM_173602 NM_173637 NM_173667 NM_173681 NM_173701 NM_173851 NM_173872 NM_174878 NM_174918 NM_174934 NM_174945 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174972 NM_175062 NM_175857 NM_175859 NM_175898 NM_175900 NM_175901 NM_175907 NM_175923 NM_176095 NM_176677 NM_176799 NM_176801 NM_177442 NM_177457 NM_177458 NM_177476 NM_177477 NM_177954 NM_177966 NM_177999 NM_178008 NM_178128 NM_178138 NM_178159 NM_178171 NM_178326 NM_178432 NM_178505 NM_178514 NM_178526 NM_178817 NM_178838 NM_181291 NM_181314 NM_181359 NM_181484 NM_181659 NM_181701 NM_181704 NM_181709 NM_181784 NM_181826 NM_181827 NM_181846 NM_181862 NM_181863 NM_181864 NM_181865 NM_181866 NM_182481 NM_182482 NM_182484 NM_182487 NM_182492 NM_182497 NM_182547 NM_182564 NM_182583 NM_182586 NM_182598 NM_182606 NM_182613 NM_182628 NM_182686 NM_182734 NM_182744 NM_182752 NM_182918 NM_182970 NM_183337 NM_183377 NM_187841 NM_194255 NM_194272 NM_194303 NM_194309 NM_194326 NM_194356 NM_198043 NM_198044 NM_198045 NM_198046 NM_198057 NM_198129 NM_198173 NM_198174 NM_198285 NM_198320 NM_198329 NM_198403 NM_198451 NM_198479 NM_198484 NM_198486 NM_198504 NM_198549 NM_198586 NM_198679 NM_198681 NM_198686 NM_198850 NM_198859 NM_198935 NM_199071 NM_199168 NM_199169 NM_199170 NM_199171 NM_199175 NM_199206 NM_199421 NM_199453 NM_201224 NM_201348 NM_201397 NM_201520 NM_201543 NM_201544 NM_201545 NM_201568 NM_201569 NM_201624 NM_203329 NM_203330 NM_203331 NM_203348 NM_203381 NM_203383 NM_203384 NM_203385 NM_203386 NM_203387 NM_203388 NM_203389 NM_203397 NM_203411 NM_203434 NM_203463 NM_205837 NM_205838 NM_205839 NM_205840 NM_205843 NM_205857 NM_206833 NM_206835 NM_206926 NM_207003 NM_207115 NM_207122 NM_207306 NM_207309 NM_207315 NM_207367 NM_207368 NM_207389 NM_207397 NM_207411 NM_207417 NM_207426 NM_207462 NM_207463 NM_207465 NM_207472 NM_207473 NM_207483 NM_207488 NM_207495 NM_207502 NM_207510 NM_207511 NM_207644 NM_213568 NM_213598 NM_213600 NM_213645 NM_213646 XM_027236 XM_030378 XM_039393 XM_044178 XM_047550 XM_047554 XM_047610 XM_048592 XM_050278 XM_051200 XM_059399 XM_059689 XM_059909 XM_084529 XM_087137 XM_114618 XM_166320 XM_208200 XM_208373 XM_208835 XM_209155 XM_211896 XM_290502 XM_290579 XM_290842 XM_290925 XM_291105 XM_291671 XM_292779 XM_293570 XM_294802 XM_295213 XM_350880 XM_370603 XM_370728 XM_370982 XM_371009 XM_371106 XM_371151 XM_371176 XM_371230 XM_371304 XM_371423 XM_371461 XM_371590 XM_372050 XM_372268 XM_372556 XM_373659 XM_373704 XM_373748 XM_373847 XM_373950 XM_374113 XM_374766 XM_374781 XM_375174 XM_375183 XM_375272 XM_375357 XM_375373 XM_375449 XM_375669 XM_375697 XM_375853 XM_375912 XM_376241 XM_376558 XM_376588 XM_376658 XM_376720 XM_376774 XM_376784 XM_376905 XM_377053 XM_377476 XM_377742 XM_378224 XM_378327 XM_378349 XM_378368 XM_378394 XM_378460 XM_378462 XM_378517 XM_378535 XM_378550 XM_378655 XM_378698 XM_378738 XM_378840 XM_378855 XM_378993 XM_379060 XM_379146 XM_379254 XM_379273 XM_379324 XM_379391 XM_379434 XM_379459 XM_379597 XM_379619 XM_379632 XM_379635 XM_379664 XM_379665 XM_379705 XM_379800 XM_379885 XM_379897 XM_379920 XM_379927 XM_379967 XM_495807 XM_495878 XM_495888 XM_496036 XM_496041 XM_496044 XM_496145 XM_496158 XM_496328 XM_496449 XM_496610 XM_496877 XM_496882 XM_496959 XM_496966 XM_496981 XM_496984 XM_496985 XM_497092 XM_497160 XM_498472 XM_498485 XM_498490 XM_498491 XM_498497 XM_498549 XM_498595 XM_498602 XM_498662 XM_498677 XM_498683 XM_498823 XM_498835 XM_498841 XM_498882 XM_498883 XM_498884 XM_498917 XM_498919 XM_498933 XM_499009 XM_499056 XM_499068 XM_499084 XM_499123 XM_499142 XM_499148 XM_499149 XM_499295 XM_499501 XM_499503 XM_499519 XM_499539 XR_000184 XR_000190 XR_000216 XR_000261 XR_000266 XR_000292 XR_000294
Genes with multiple seed matches:
NM_000368 NM_000402 NM_000497 NM_000498 NM_000780 NM_000843 NM_001001418 NM_001001890 NM_001002836 NM_001005611 NM_001010000 NM_001013685 NM_001017915 NM_001017995 NM_001018050 NM_001018051 NM_001018052 NM_001024808 NM_001360 NM_001390 NM_001754 NM_002052 NM_002751 NM_003030 NM_003168 NM_003189 NM_003281 NM_003369 NM_003528 NM_003605 NM_003681 NM_003834 NM_003926 NM_004778 NM_004779 NM_004921 NM_005076 NM_005348 NM_005458 NM_005541 NM_006037 NM_006884 NM_007371 NM_012174 NM_012398 NM_013301 NM_013385 NM_014354 NM_014564 NM_014587 NM_014602 NM_014891 NM_015020 NM_015155 NM_015202 NM_015205 NM_015347 NM_016611 NM_017588 NM_017968 NM_019074 NM_019857 NM_020168 NM_020766 NM_020956 NM_020993 NM_021165 NM_021168 NM_022566 NM_022764 NM_024877 NM_025078 NM_030964 NM_031445 NM_032189 NM_032310 NM_032546 NM_032975 NM_032980 NM_052821 NM_058192 NM_080605 NM_138338 NM_138983 NM_138993 NM_139015 NM_144682 NM_145285 NM_153348 NM_175859 NM_183337 NM_187841 NM_207411 NM_207473 NM_213600 XM_087137 XM_375174 XM_375183 XM_375373 XM_376558 XM_378655 XM_496877 XM_498835 XM_498917 XM_498919 XM_499056 XM_499503 XR_000261 XR_000292
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)