VIRsiRNAdb

Predicted off-targets seeds for siRNA "ugaccucaauaaacguuca" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1229.
Total Genes with multiple seed matches: 57.
Genes with at least one seed match: NM_000031 NM_000046 NM_000071 NM_000081 NM_000113 NM_000115 NM_000219 NM_000250 NM_000253 NM_000298 NM_000303 NM_000330 NM_000366 NM_000376 NM_000445 NM_000451 NM_000452 NM_000503 NM_000522 NM_000539 NM_000554 NM_000609 NM_000660 NM_000664 NM_000693 NM_000695 NM_000780 NM_000838 NM_000843 NM_000868 NM_000870 NM_000950 NM_000963 NM_000997 NM_001001188 NM_001001342 NM_001001433 NM_001001434 NM_001001481 NM_001001482 NM_001001549 NM_001001550 NM_001001555 NM_001001664 NM_001001693 NM_001001704 NM_001001711 NM_001001871 NM_001001873 NM_001001878 NM_001002231 NM_001002232 NM_001002259 NM_001002296 NM_001002860 NM_001002861 NM_001002909 NM_001003399 NM_001003897 NM_001003945 NM_001004301 NM_001004302 NM_001004322 NM_001004431 NM_001005242 NM_001005404 NM_001005502 NM_001005732 NM_001005733 NM_001006115 NM_001006634 NM_001007099 NM_001007100 NM_001007250 NM_001007278 NM_001007536 NM_001008225 NM_001008234 NM_001008493 NM_001008537 NM_001008917 NM_001009555 NM_001009998 NM_001010867 NM_001012270 NM_001012271 NM_001012418 NM_001012508 NM_001012614 NM_001012651 NM_001012755 NM_001012756 NM_001012957 NM_001012960 NM_001013640 NM_001013666 NM_001013673 NM_001013679 NM_001013713 NM_001013721 NM_001015882 NM_001015886 NM_001017395 NM_001017430 NM_001017431 NM_001017535 NM_001017980 NM_001017989 NM_001018008 NM_001018058 NM_001018090 NM_001018091 NM_001018092 NM_001018093 NM_001018094 NM_001018097 NM_001018098 NM_001018102 NM_001024736 NM_001024843 NM_001024847 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025100 NM_001025101 NM_001025201 NM_001025233 NM_001025266 NM_001050 NM_001066 NM_001116 NM_001150 NM_001168 NM_001184 NM_001202 NM_001204 NM_001230 NM_001234 NM_001238 NM_001257 NM_001259 NM_001267 NM_001328 NM_001343 NM_001400 NM_001438 NM_001440 NM_001493 NM_001505 NM_001518 NM_001546 NM_001556 NM_001557 NM_001561 NM_001632 NM_001649 NM_001652 NM_001678 NM_001722 NM_001723 NM_001755 NM_001759 NM_001804 NM_001822 NM_001874 NM_001896 NM_001936 NM_001937 NM_001951 NM_001975 NM_002015 NM_002023 NM_002025 NM_002052 NM_002073 NM_002180 NM_002182 NM_002267 NM_002319 NM_002375 NM_002385 NM_002395 NM_002402 NM_002406 NM_002475 NM_002501 NM_002509 NM_002535 NM_002561 NM_002569 NM_002605 NM_002634 NM_002695 NM_002714 NM_002716 NM_002734 NM_002772 NM_002820 NM_002845 NM_002847 NM_002859 NM_002874 NM_002878 NM_002896 NM_002898 NM_002919 NM_002944 NM_002979 NM_003010 NM_003021 NM_003024 NM_003088 NM_003110 NM_003147 NM_003162 NM_003170 NM_003173 NM_003236 NM_003242 NM_003262 NM_003278 NM_003281 NM_003307 NM_003366 NM_003369 NM_003388 NM_003436 NM_003458 NM_003483 NM_003493 NM_003496 NM_003498 NM_003506 NM_003520 NM_003577 NM_003617 NM_003644 NM_003681 NM_003726 NM_003758 NM_003763 NM_003764 NM_003774 NM_003781 NM_003817 NM_003840 NM_003859 NM_003861 NM_003895 NM_003916 NM_003945 NM_003985 NM_003998 NM_004030 NM_004096 NM_004098 NM_004099 NM_004133 NM_004171 NM_004200 NM_004227 NM_004265 NM_004267 NM_004273 NM_004282 NM_004283 NM_004300 NM_004315 NM_004326 NM_004414 NM_004438 NM_004473 NM_004549 NM_004572 NM_004575 NM_004584 NM_004612 NM_004614 NM_004620 NM_004671 NM_004735 NM_004744 NM_004839 NM_004848 NM_004927 NM_004996 NM_005046 NM_005065 NM_005069 NM_005088 NM_005112 NM_005117 NM_005173 NM_005188 NM_005199 NM_005202 NM_005239 NM_005240 NM_005259 NM_005272 NM_005311 NM_005320 NM_005342 NM_005364 NM_005370 NM_005399 NM_005409 NM_005477 NM_005493 NM_005503 NM_005544 NM_005551 NM_005563 NM_005607 NM_005610 NM_005613 NM_005635 NM_005636 NM_005656 NM_005668 NM_005677 NM_005700 NM_005724 NM_005729 NM_005745 NM_005779 NM_005798 NM_005810 NM_005845 NM_005856 NM_005883 NM_005895 NM_005898 NM_005931 NM_005935 NM_005956 NM_005958 NM_005986 NM_006018 NM_006045 NM_006048 NM_006096 NM_006108 NM_006116 NM_006176 NM_006178 NM_006183 NM_006226 NM_006245 NM_006255 NM_006275 NM_006282 NM_006315 NM_006319 NM_006371 NM_006373 NM_006375 NM_006379 NM_006439 NM_006460 NM_006471 NM_006496 NM_006502 NM_006505 NM_006546 NM_006550 NM_006598 NM_006614 NM_006626 NM_006643 NM_006661 NM_006665 NM_006706 NM_006731 NM_006742 NM_006788 NM_006829 NM_006847 NM_006855 NM_006861 NM_006895 NM_007005 NM_007032 NM_007042 NM_007050 NM_007055 NM_007099 NM_007129 NM_007152 NM_007249 NM_007306 NM_007321 NM_007353 NM_007361 NM_007374 NM_009589 NM_012069 NM_012073 NM_012074 NM_012112 NM_012184 NM_012193 NM_012218 NM_012238 NM_012252 NM_012286 NM_012288 NM_012296 NM_012307 NM_012309 NM_012408 NM_012429 NM_013284 NM_013286 NM_014048 NM_014055 NM_014057 NM_014061 NM_014066 NM_014155 NM_014161 NM_014230 NM_014279 NM_014293 NM_014319 NM_014365 NM_014388 NM_014396 NM_014444 NM_014448 NM_014499 NM_014553 NM_014570 NM_014571 NM_014601 NM_014606 NM_014608 NM_014610 NM_014613 NM_014618 NM_014665 NM_014678 NM_014704 NM_014706 NM_014728 NM_014747 NM_014771 NM_014804 NM_014810 NM_014837 NM_014846 NM_014850 NM_014854 NM_014867 NM_014880 NM_014891 NM_014897 NM_014903 NM_014906 NM_014912 NM_014936 NM_014951 NM_014962 NM_015008 NM_015033 NM_015056 NM_015075 NM_015076 NM_015085 NM_015088 NM_015112 NM_015143 NM_015202 NM_015246 NM_015257 NM_015265 NM_015267 NM_015271 NM_015294 NM_015310 NM_015313 NM_015315 NM_015332 NM_015345 NM_015374 NM_015383 NM_015409 NM_015431 NM_015526 NM_015532 NM_015560 NM_015596 NM_015685 NM_015705 NM_015892 NM_015894 NM_015938 NM_015986 NM_016099 NM_016103 NM_016132 NM_016142 NM_016173 NM_016264 NM_016284 NM_016351 NM_016372 NM_016376 NM_016383 NM_016436 NM_016463 NM_016590 NM_016603 NM_016620 NM_016735 NM_016831 NM_017434 NM_017491 NM_017588 NM_017610 NM_017646 NM_017655 NM_017728 NM_017753 NM_017784 NM_017849 NM_017856 NM_017876 NM_017921 NM_017957 NM_017983 NM_017990 NM_018013 NM_018032 NM_018035 NM_018045 NM_018047 NM_018054 NM_018069 NM_018075 NM_018084 NM_018133 NM_018146 NM_018153 NM_018172 NM_018212 NM_018214 NM_018215 NM_018216 NM_018227 NM_018246 NM_018248 NM_018260 NM_018266 NM_018267 NM_018277 NM_018293 NM_018299 NM_018323 NM_018325 NM_018373 NM_018382 NM_018394 NM_018400 NM_018424 NM_018427 NM_018440 NM_018460 NM_018472 NM_018488 NM_018555 NM_018638 NM_018658 NM_018660 NM_018662 NM_018671 NM_018698 NM_018836 NM_018941 NM_018943 NM_018962 NM_018984 NM_018999 NM_019009 NM_019027 NM_019066 NM_019119 NM_019851 NM_019862 NM_019898 NM_019899 NM_019900 NM_019901 NM_019902 NM_020125 NM_020148 NM_020167 NM_020182 NM_020211 NM_020228 NM_020326 NM_020347 NM_020398 NM_020440 NM_020443 NM_020462 NM_020546 NM_020638 NM_020652 NM_020684 NM_020726 NM_020761 NM_020770 NM_020774 NM_020777 NM_020792 NM_020795 NM_020800 NM_020824 NM_020861 NM_020870 NM_020918 NM_020939 NM_020946 NM_021064 NM_021093 NM_021155 NM_021215 NM_021220 NM_021628 NM_021638 NM_021643 NM_021646 NM_021649 NM_021722 NM_021723 NM_021784 NM_021928 NM_021961 NM_021977 NM_021996 NM_022041 NM_022042 NM_022077 NM_022085 NM_022105 NM_022165 NM_022346 NM_022463 NM_022492 NM_022755 NM_022767 NM_022780 NM_022845 NM_022900 NM_023009 NM_023018 NM_023112 NM_023925 NM_023938 NM_024035 NM_024072 NM_024309 NM_024321 NM_024325 NM_024342 NM_024345 NM_024416 NM_024554 NM_024643 NM_024644 NM_024761 NM_024807 NM_024815 NM_024817 NM_024894 NM_025059 NM_025133 NM_025188 NM_025191 NM_025202 NM_025240 NM_030576 NM_030622 NM_030636 NM_030655 NM_030760 NM_030766 NM_030795 NM_030806 NM_030810 NM_030884 NM_030949 NM_030958 NM_030972 NM_031310 NM_031439 NM_031459 NM_031462 NM_031476 NM_031891 NM_031894 NM_031935 NM_031950 NM_031961 NM_032037 NM_032145 NM_032156 NM_032186 NM_032228 NM_032242 NM_032264 NM_032268 NM_032300 NM_032338 NM_032375 NM_032382 NM_032409 NM_032421 NM_032435 NM_032445 NM_032446 NM_032479 NM_032489 NM_032508 NM_032551 NM_032573 NM_032584 NM_032627 NM_032689 NM_032740 NM_032800 NM_032807 NM_032808 NM_032826 NM_032849 NM_032916 NM_032932 NM_032968 NM_032969 NM_032976 NM_032977 NM_032999 NM_033000 NM_033001 NM_033014 NM_033035 NM_033051 NM_033052 NM_033090 NM_033121 NM_033201 NM_033211 NM_033224 NM_033274 NM_033337 NM_033346 NM_033393 NM_033397 NM_033426 NM_033449 NM_033542 NM_033551 NM_044472 NM_052811 NM_052821 NM_052831 NM_052862 NM_052898 NM_052943 NM_052996 NM_053279 NM_053282 NM_057177 NM_057182 NM_058178 NM_058243 NM_080282 NM_080489 NM_080491 NM_080538 NM_080539 NM_080540 NM_080541 NM_080542 NM_080543 NM_080544 NM_080647 NM_080796 NM_080821 NM_080836 NM_080928 NM_101395 NM_130443 NM_130446 NM_130797 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_130842 NM_130843 NM_130850 NM_130851 NM_130901 NM_133170 NM_133334 NM_133445 NM_133451 NM_133463 NM_133477 NM_133496 NM_133627 NM_133628 NM_133629 NM_133630 NM_138298 NM_138299 NM_138337 NM_138447 NM_138450 NM_138551 NM_138722 NM_138723 NM_138726 NM_138731 NM_138784 NM_138983 NM_139021 NM_139177 NM_139277 NM_139279 NM_139284 NM_139321 NM_144621 NM_144649 NM_144710 NM_144721 NM_144973 NM_144982 NM_145045 NM_145117 NM_145214 NM_145231 NM_145248 NM_145250 NM_145263 NM_145268 NM_145284 NM_145752 NM_145803 NM_145906 NM_147192 NM_148170 NM_148980 NM_152235 NM_152270 NM_152302 NM_152306 NM_152328 NM_152378 NM_152390 NM_152410 NM_152437 NM_152442 NM_152450 NM_152480 NM_152509 NM_152527 NM_152558 NM_152563 NM_152624 NM_152704 NM_152776 NM_152896 NM_152990 NM_152999 NM_153027 NM_153213 NM_153232 NM_153273 NM_153343 NM_153364 NM_153367 NM_153675 NM_153712 NM_153757 NM_153831 NM_170710 NM_170741 NM_170742 NM_172058 NM_172059 NM_172060 NM_172193 NM_172225 NM_172239 NM_172318 NM_172341 NM_173075 NM_173156 NM_173357 NM_173358 NM_173454 NM_173455 NM_173456 NM_173457 NM_173468 NM_173508 NM_173510 NM_173522 NM_173527 NM_173536 NM_173562 NM_173575 NM_173617 NM_173638 NM_173656 NM_173667 NM_173677 NM_173809 NM_174887 NM_174901 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174962 NM_174976 NM_175080 NM_175571 NM_175698 NM_175709 NM_175729 NM_175940 NM_176823 NM_177524 NM_177525 NM_177551 NM_177554 NM_177924 NM_178034 NM_178150 NM_178336 NM_178509 NM_178520 NM_178584 NM_178814 NM_178817 NM_178831 NM_178838 NM_178857 NM_178864 NM_180976 NM_180977 NM_180981 NM_180982 NM_181265 NM_181304 NM_181305 NM_181306 NM_181307 NM_181443 NM_181457 NM_181458 NM_181460 NM_181502 NM_181504 NM_181521 NM_181523 NM_181524 NM_181789 NM_181846 NM_181871 NM_182314 NM_182525 NM_182532 NM_182533 NM_182560 NM_182570 NM_182583 NM_182613 NM_182894 NM_182964 NM_183047 NM_183048 NM_183372 NM_183416 NM_194285 NM_194286 NM_194324 NM_194352 NM_194439 NM_194460 NM_198194 NM_198320 NM_198333 NM_198441 NM_198472 NM_198490 NM_198493 NM_198508 NM_198527 NM_198567 NM_198595 NM_198681 NM_198834 NM_198835 NM_198836 NM_198837 NM_198838 NM_198839 NM_198850 NM_198851 NM_198902 NM_198964 NM_199000 NM_199054 NM_199135 NM_199138 NM_199165 NM_199169 NM_199170 NM_199171 NM_199330 NM_199331 NM_199332 NM_199358 NM_199437 NM_199438 NM_199439 NM_201269 NM_201378 NM_201379 NM_201380 NM_201381 NM_201382 NM_201383 NM_201384 NM_201399 NM_201412 NM_201432 NM_201433 NM_201568 NM_201569 NM_201623 NM_201625 NM_201628 NM_203304 NM_203306 NM_203399 NM_203400 NM_203401 NM_203417 NM_203418 NM_203446 NM_205548 NM_205857 NM_206594 NM_206595 NM_206835 NM_206909 NM_207009 NM_207126 NM_207129 NM_207299 NM_207318 NM_207324 NM_207327 NM_207334 NM_207454 NM_207460 NM_207461 NM_207462 NM_207471 NM_207489 NM_207500 NM_212464 NM_212467 NM_212471 NM_212472 NM_213568 NM_213590 NM_213598 NM_213613 XM_032901 XM_035299 XM_039877 XM_039908 XM_047357 XM_048592 XM_048898 XM_051017 XM_059482 XM_059689 XM_059929 XM_084529 XM_084852 XM_086761 XM_088768 XM_113967 XM_166320 XM_208061 XM_209607 XM_212061 XM_291028 XM_291095 XM_291128 XM_370570 XM_370975 XM_371181 XM_371184 XM_371759 XM_371797 XM_371801 XM_372233 XM_373690 XM_373744 XM_373824 XM_373848 XM_373950 XM_374196 XM_374326 XM_374803 XM_374842 XM_374919 XM_375430 XM_375527 XM_375669 XM_375816 XM_376049 XM_376269 XM_376386 XM_376631 XM_376784 XM_378259 XM_378279 XM_378321 XM_378390 XM_378550 XM_378650 XM_378708 XM_378746 XM_378786 XM_378807 XM_378823 XM_378835 XM_378908 XM_378925 XM_378949 XM_378973 XM_378993 XM_379006 XM_379060 XM_379096 XM_379097 XM_379145 XM_379254 XM_379363 XM_379402 XM_379432 XM_379458 XM_379459 XM_379541 XM_379619 XM_379635 XM_379650 XM_379668 XM_379866 XM_380103 XM_495795 XM_495796 XM_495844 XM_495888 XM_495909 XM_496143 XM_496151 XM_496156 XM_496161 XM_496328 XM_496391 XM_496394 XM_496399 XM_496401 XM_496637 XM_496692 XM_496836 XM_496849 XM_496943 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497089 XM_498427 XM_498446 XM_498451 XM_498479 XM_498484 XM_498605 XM_498606 XM_498660 XM_498693 XM_498777 XM_498782 XM_498823 XM_498878 XM_498972 XM_498992 XM_498998 XM_499047 XM_499116 XM_499152 XM_499257 XM_499309 XM_499362 XM_499392 XM_499581 XM_499602 XR_000192 XR_000273	Genes with multiple seed matches: NM_000253 NM_000451 NM_000664 NM_001007536 NM_001008493 NM_001017980 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001204 NM_001936 NM_002182 NM_002385 NM_003388 NM_003681 NM_004171 NM_004438 NM_006546 NM_006788 NM_012074 NM_014066 NM_014365 NM_014601 NM_014665 NM_014850 NM_018212 NM_018260 NM_020777 NM_021638 NM_021649 NM_021977 NM_023018 NM_032421 NM_032916 NM_033201 NM_033211 NM_033346 NM_130446 NM_130797 NM_138298 NM_138299 NM_144621 NM_173617 NM_175709 NM_198595 NM_198835 NM_206835 NM_207009 NM_212464 XM_051017 XM_166320 XM_373950 XM_495795 XM_495909

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA