VIRsiRNAdb

Predicted off-targets seeds for siRNA "aagguguuguugauaccgaug" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :746.
Total Genes with multiple seed matches: 17.
Genes with at least one seed match: NM_000037 NM_000131 NM_000206 NM_000264 NM_000266 NM_000278 NM_000297 NM_000322 NM_000427 NM_000430 NM_000446 NM_000500 NM_000555 NM_000611 NM_000684 NM_000743 NM_000809 NM_000877 NM_000898 NM_000902 NM_001001344 NM_001001549 NM_001001550 NM_001001555 NM_001001660 NM_001001694 NM_001001698 NM_001001702 NM_001001795 NM_001001924 NM_001001925 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001001931 NM_001002257 NM_001002811 NM_001002812 NM_001002848 NM_001002849 NM_001002860 NM_001003399 NM_001003652 NM_001004352 NM_001005412 NM_001006115 NM_001008211 NM_001008212 NM_001008213 NM_001008393 NM_001008410 NM_001008493 NM_001008744 NM_001009553 NM_001009881 NM_001009882 NM_001009956 NM_001010903 NM_001010987 NM_001012339 NM_001012418 NM_001012420 NM_001012423 NM_001012651 NM_001012707 NM_001012733 NM_001012734 NM_001012754 NM_001012958 NM_001012977 NM_001013650 NM_001013693 NM_001013839 NM_001013843 NM_001014291 NM_001014797 NM_001015880 NM_001017368 NM_001017370 NM_001017423 NM_001017916 NM_001017917 NM_001017918 NM_001017972 NM_001017980 NM_001018021 NM_001018064 NM_001018108 NM_001024455 NM_001024649 NM_001024676 NM_001024808 NM_001024940 NM_001024941 NM_001025100 NM_001025266 NM_001031 NM_001080 NM_001093 NM_001125 NM_001148 NM_001387 NM_001389 NM_001396 NM_001419 NM_001451 NM_001521 NM_001634 NM_001744 NM_001746 NM_001789 NM_001854 NM_001905 NM_001913 NM_001915 NM_001941 NM_001949 NM_001980 NM_002048 NM_002086 NM_002165 NM_002180 NM_002268 NM_002507 NM_002547 NM_002570 NM_002641 NM_002710 NM_002731 NM_002737 NM_002819 NM_002860 NM_002868 NM_002881 NM_002886 NM_002976 NM_003011 NM_003020 NM_003040 NM_003107 NM_003152 NM_003247 NM_003288 NM_003304 NM_003387 NM_003388 NM_003390 NM_003405 NM_003433 NM_003490 NM_003492 NM_003505 NM_003588 NM_003639 NM_003644 NM_003759 NM_003768 NM_003774 NM_003819 NM_003855 NM_003872 NM_003885 NM_003889 NM_003918 NM_003932 NM_003941 NM_003959 NM_003987 NM_003988 NM_003989 NM_003990 NM_004059 NM_004133 NM_004281 NM_004349 NM_004385 NM_004387 NM_004397 NM_004423 NM_004483 NM_004560 NM_004575 NM_004598 NM_004666 NM_004670 NM_004735 NM_004737 NM_004772 NM_004781 NM_004799 NM_004968 NM_005000 NM_005036 NM_005082 NM_005093 NM_005100 NM_005180 NM_005188 NM_005197 NM_005206 NM_005235 NM_005311 NM_005346 NM_005370 NM_005385 NM_005402 NM_005529 NM_005542 NM_005595 NM_005610 NM_005634 NM_005647 NM_005668 NM_005682 NM_005699 NM_005817 NM_005828 NM_005835 NM_005895 NM_005901 NM_005985 NM_005986 NM_006034 NM_006047 NM_006096 NM_006180 NM_006218 NM_006245 NM_006261 NM_006315 NM_006393 NM_006496 NM_006524 NM_006643 NM_006658 NM_006711 NM_006777 NM_006813 NM_006843 NM_006876 NM_006877 NM_006888 NM_006925 NM_007038 NM_007127 NM_007167 NM_007175 NM_007210 NM_007218 NM_007249 NM_007287 NM_007288 NM_007289 NM_007321 NM_007324 NM_012072 NM_012083 NM_012095 NM_012105 NM_012158 NM_012215 NM_012234 NM_012307 NM_012308 NM_013276 NM_013390 NM_013958 NM_013959 NM_013962 NM_014279 NM_014286 NM_014358 NM_014369 NM_014429 NM_014452 NM_014548 NM_014573 NM_014610 NM_014615 NM_014631 NM_014634 NM_014653 NM_014657 NM_014698 NM_014701 NM_014732 NM_014737 NM_014774 NM_014788 NM_014801 NM_014821 NM_014910 NM_014912 NM_014918 NM_014935 NM_014940 NM_014943 NM_015039 NM_015056 NM_015064 NM_015071 NM_015079 NM_015124 NM_015170 NM_015213 NM_015219 NM_015233 NM_015269 NM_015277 NM_015288 NM_015315 NM_015326 NM_015328 NM_015347 NM_015379 NM_015385 NM_015417 NM_015444 NM_015455 NM_015457 NM_015557 NM_015575 NM_015610 NM_015833 NM_015834 NM_015892 NM_015896 NM_015922 NM_015980 NM_015995 NM_016003 NM_016040 NM_016063 NM_016081 NM_016083 NM_016102 NM_016118 NM_016135 NM_016227 NM_016235 NM_016433 NM_016484 NM_016531 NM_016534 NM_016652 NM_016734 NM_016823 NM_016831 NM_017450 NM_017512 NM_017520 NM_017548 NM_017554 NM_017628 NM_017666 NM_017709 NM_017776 NM_017905 NM_017927 NM_017968 NM_017970 NM_017974 NM_017999 NM_018043 NM_018087 NM_018108 NM_018110 NM_018141 NM_018189 NM_018193 NM_018211 NM_018212 NM_018234 NM_018319 NM_018364 NM_018393 NM_018419 NM_018452 NM_018639 NM_018658 NM_018669 NM_018711 NM_018941 NM_018970 NM_019020 NM_019616 NM_020066 NM_020119 NM_020133 NM_020165 NM_020180 NM_020243 NM_020440 NM_020472 NM_020473 NM_020475 NM_020476 NM_020477 NM_020674 NM_020698 NM_020699 NM_020707 NM_020738 NM_020749 NM_020825 NM_020870 NM_020871 NM_020896 NM_020926 NM_020970 NM_020977 NM_020993 NM_021035 NM_021116 NM_021638 NM_021642 NM_021649 NM_021812 NM_021813 NM_021949 NM_021976 NM_021977 NM_021980 NM_022002 NM_022042 NM_022103 NM_022114 NM_022308 NM_022465 NM_022468 NM_022473 NM_022474 NM_022718 NM_022748 NM_023032 NM_023938 NM_024016 NM_024423 NM_024557 NM_024645 NM_024650 NM_024670 NM_024755 NM_024791 NM_024871 NM_024900 NM_024906 NM_024922 NM_024935 NM_025106 NM_025140 NM_025197 NM_025230 NM_030622 NM_030643 NM_030803 NM_030805 NM_030907 NM_031211 NM_031265 NM_031442 NM_031459 NM_031462 NM_031484 NM_031953 NM_031990 NM_031991 NM_032012 NM_032042 NM_032165 NM_032179 NM_032193 NM_032289 NM_032353 NM_032421 NM_032484 NM_032503 NM_032554 NM_032622 NM_032795 NM_033013 NM_033055 NM_033083 NM_033161 NM_033181 NM_033221 NM_033238 NM_033260 NM_033274 NM_033288 NM_033551 NM_052978 NM_057178 NM_078483 NM_080594 NM_080629 NM_080630 NM_101395 NM_130436 NM_130437 NM_130438 NM_130830 NM_130848 NM_133480 NM_133481 NM_133632 NM_133633 NM_133642 NM_138284 NM_138319 NM_138385 NM_138608 NM_138991 NM_138992 NM_139062 NM_139241 NM_144497 NM_144590 NM_144681 NM_144727 NM_144778 NM_144973 NM_145061 NM_145188 NM_145189 NM_145273 NM_145278 NM_145285 NM_145638 NM_145646 NM_145660 NM_145663 NM_145693 NM_145799 NM_147156 NM_152237 NM_152330 NM_152362 NM_152367 NM_152415 NM_152454 NM_152487 NM_152551 NM_152581 NM_152595 NM_152622 NM_152687 NM_152727 NM_152776 NM_152831 NM_152838 NM_152933 NM_152934 NM_153273 NM_153337 NM_153688 NM_170662 NM_170706 NM_170721 NM_170740 NM_170741 NM_170742 NM_170743 NM_170773 NM_170774 NM_172367 NM_173042 NM_173043 NM_173064 NM_173065 NM_173487 NM_173558 NM_173570 NM_173583 NM_173597 NM_173652 NM_173658 NM_173674 NM_175634 NM_175635 NM_175636 NM_175847 NM_175864 NM_175884 NM_175898 NM_176095 NM_178037 NM_178038 NM_178039 NM_178040 NM_178122 NM_178151 NM_178152 NM_178153 NM_178169 NM_178342 NM_180976 NM_180977 NM_181353 NM_181357 NM_181500 NM_181706 NM_182551 NM_182583 NM_182700 NM_182833 NM_182915 NM_182948 NM_183075 NM_183397 NM_194283 NM_194290 NM_194303 NM_194312 NM_194356 NM_198153 NM_198331 NM_198334 NM_198335 NM_198337 NM_198440 NM_198460 NM_198484 NM_198595 NM_198715 NM_198890 NM_198893 NM_198956 NM_198990 NM_199043 NM_199072 NM_199182 NM_199331 NM_199332 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 NM_199454 NM_199461 NM_201266 NM_201279 NM_201432 NM_201433 NM_201524 NM_201525 NM_201567 NM_201628 NM_203305 NM_203329 NM_203330 NM_203331 NM_203426 NM_203448 NM_203451 NM_203506 NM_206887 NM_207012 NM_207304 NM_207449 NM_207458 NM_207462 NM_207470 NM_207503 NM_207506 NM_213613 XM_036988 XM_039393 XM_039676 XM_042066 XM_044434 XM_046264 XM_052561 XM_085347 XM_085463 XM_087490 XM_097977 XM_167044 XM_208847 XM_208930 XM_290615 XM_292160 XM_293918 XM_294765 XM_370654 XM_370837 XM_370839 XM_370843 XM_370917 XM_371181 XM_371490 XM_372267 XM_372584 XM_373445 XM_374013 XM_375152 XM_375443 XM_375669 XM_375821 XM_375912 XM_376049 XM_376372 XM_376463 XM_376843 XM_378272 XM_378360 XM_378374 XM_378507 XM_378553 XM_378625 XM_378667 XM_378678 XM_378686 XM_378700 XM_378708 XM_378756 XM_378982 XM_378983 XM_379097 XM_379156 XM_379288 XM_379664 XM_379665 XM_379694 XM_379736 XM_379927 XM_495844 XM_496088 XM_496315 XM_496328 XM_496976 XM_497080 XM_498432 XM_498452 XM_498460 XM_498549 XM_498589 XM_498614 XM_498814 XM_498992 XM_499110 XM_499147 XM_499561 XM_499590	Genes with multiple seed matches: NM_000131 NM_001012651 NM_001024808 NM_001025100 NM_005647 NM_015385 NM_016135 NM_019616 NM_020993 NM_031462 NM_031484 NM_033238 NM_182583 NM_194290 NM_201628 XM_375912 XM_498589

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA