VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"aacuggcacacuacuugucga"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
907
.
Total Genes with multiple seed matches:
50
.
Genes with at least one seed match:
NM_000028 NM_000037 NM_000092 NM_000123 NM_000125 NM_000144 NM_000148 NM_000245 NM_000256 NM_000268 NM_000303 NM_000362 NM_000411 NM_000431 NM_000451 NM_000527 NM_000560 NM_000587 NM_000598 NM_000620 NM_000636 NM_000642 NM_000643 NM_000644 NM_000645 NM_000646 NM_000791 NM_000924 NM_000958 NM_001001664 NM_001001681 NM_001001688 NM_001002257 NM_001002260 NM_001002810 NM_001003665 NM_001003940 NM_001003942 NM_001003943 NM_001004319 NM_001005303 NM_001005388 NM_001005505 NM_001005732 NM_001005733 NM_001005734 NM_001005861 NM_001006634 NM_001006656 NM_001006946 NM_001007466 NM_001007553 NM_001007559 NM_001008404 NM_001008406 NM_001008407 NM_001008408 NM_001008491 NM_001008492 NM_001008493 NM_001008529 NM_001008537 NM_001009913 NM_001010924 NM_001010925 NM_001011703 NM_001011708 NM_001012418 NM_001012420 NM_001012426 NM_001012427 NM_001012512 NM_001012513 NM_001012614 NM_001012733 NM_001012734 NM_001012960 NM_001012980 NM_001013398 NM_001013637 NM_001013681 NM_001013693 NM_001014283 NM_001014439 NM_001014797 NM_001014811 NM_001015048 NM_001015049 NM_001017423 NM_001017972 NM_001017979 NM_001018025 NM_001023563 NM_001023565 NM_001024631 NM_001024688 NM_001025079 NM_001025080 NM_001025100 NM_001031 NM_001036 NM_001049 NM_001116 NM_001135 NM_001174 NM_001190 NM_001280 NM_001282 NM_001327 NM_001328 NM_001394 NM_001430 NM_001440 NM_001483 NM_001495 NM_001497 NM_001500 NM_001530 NM_001584 NM_001619 NM_001777 NM_001873 NM_001946 NM_001974 NM_002010 NM_002091 NM_002108 NM_002149 NM_002158 NM_002163 NM_002177 NM_002193 NM_002202 NM_002223 NM_002246 NM_002319 NM_002340 NM_002359 NM_002414 NM_002444 NM_002485 NM_002560 NM_002581 NM_002629 NM_002655 NM_002725 NM_002747 NM_002756 NM_002776 NM_002791 NM_002808 NM_002814 NM_002821 NM_002827 NM_002860 NM_002906 NM_002919 NM_002922 NM_002941 NM_002957 NM_002958 NM_002959 NM_002968 NM_002997 NM_003010 NM_003016 NM_003045 NM_003107 NM_003108 NM_003123 NM_003133 NM_003147 NM_003152 NM_003165 NM_003181 NM_003310 NM_003356 NM_003387 NM_003400 NM_003412 NM_003418 NM_003473 NM_003590 NM_003644 NM_003648 NM_003661 NM_003670 NM_003679 NM_003743 NM_003746 NM_003749 NM_003758 NM_003791 NM_003800 NM_003840 NM_003846 NM_003860 NM_003921 NM_003924 NM_003941 NM_003981 NM_004054 NM_004069 NM_004114 NM_004234 NM_004300 NM_004302 NM_004309 NM_004380 NM_004399 NM_004404 NM_004577 NM_004593 NM_004629 NM_004645 NM_004650 NM_004669 NM_004689 NM_004711 NM_004745 NM_004762 NM_004772 NM_004821 NM_004834 NM_004839 NM_004865 NM_004873 NM_004992 NM_005023 NM_005063 NM_005108 NM_005116 NM_005141 NM_005184 NM_005197 NM_005228 NM_005238 NM_005284 NM_005316 NM_005343 NM_005399 NM_005453 NM_005480 NM_005493 NM_005574 NM_005637 NM_005676 NM_005737 NM_005813 NM_005814 NM_005816 NM_005871 NM_005902 NM_005975 NM_005985 NM_005996 NM_006007 NM_006030 NM_006055 NM_006096 NM_006106 NM_006138 NM_006155 NM_006196 NM_006240 NM_006282 NM_006359 NM_006362 NM_006415 NM_006526 NM_006539 NM_006626 NM_006680 NM_006700 NM_006732 NM_006738 NM_006752 NM_006763 NM_006795 NM_006796 NM_006845 NM_006877 NM_006908 NM_006936 NM_006955 NM_006981 NM_007023 NM_007099 NM_007117 NM_007158 NM_007200 NM_007219 NM_007225 NM_007249 NM_007270 NM_007271 NM_007353 NM_012102 NM_012219 NM_012281 NM_012288 NM_012402 NM_012434 NM_012464 NM_013227 NM_013230 NM_013244 NM_013261 NM_013262 NM_013341 NM_013361 NM_013411 NM_013446 NM_014049 NM_014106 NM_014138 NM_014143 NM_014167 NM_014183 NM_014286 NM_014322 NM_014333 NM_014338 NM_014383 NM_014399 NM_014610 NM_014631 NM_014646 NM_014660 NM_014667 NM_014698 NM_014704 NM_014710 NM_014776 NM_014810 NM_014854 NM_014900 NM_014913 NM_014930 NM_014934 NM_014962 NM_015020 NM_015027 NM_015045 NM_015050 NM_015090 NM_015127 NM_015155 NM_015187 NM_015192 NM_015229 NM_015277 NM_015286 NM_015313 NM_015349 NM_015353 NM_015394 NM_015428 NM_015455 NM_015458 NM_015549 NM_015576 NM_015577 NM_015627 NM_015892 NM_015897 NM_015947 NM_015959 NM_015981 NM_015995 NM_016037 NM_016080 NM_016142 NM_016172 NM_016263 NM_016274 NM_016282 NM_016343 NM_016376 NM_016418 NM_016463 NM_016532 NM_016534 NM_016569 NM_016575 NM_016590 NM_016831 NM_016931 NM_017409 NM_017456 NM_017506 NM_017554 NM_017628 NM_017778 NM_017787 NM_017798 NM_017823 NM_017835 NM_017837 NM_017927 NM_017990 NM_018023 NM_018054 NM_018082 NM_018087 NM_018121 NM_018185 NM_018212 NM_018235 NM_018273 NM_018280 NM_018300 NM_018303 NM_018324 NM_018346 NM_018362 NM_018366 NM_018464 NM_018470 NM_018656 NM_018890 NM_018898 NM_018899 NM_018900 NM_018901 NM_018902 NM_018903 NM_018904 NM_018905 NM_018906 NM_018907 NM_018908 NM_018909 NM_018910 NM_018911 NM_018959 NM_018964 NM_019011 NM_019034 NM_019094 NM_019594 NM_020119 NM_020123 NM_020132 NM_020133 NM_020245 NM_020310 NM_020338 NM_020340 NM_020403 NM_020439 NM_020445 NM_020475 NM_020476 NM_020477 NM_020647 NM_020697 NM_020699 NM_020708 NM_020710 NM_020714 NM_020751 NM_020762 NM_020772 NM_020784 NM_020809 NM_020853 NM_020863 NM_020894 NM_020994 NM_021033 NM_021116 NM_021155 NM_021189 NM_021267 NM_021575 NM_021635 NM_021728 NM_021946 NM_021961 NM_021963 NM_021976 NM_021977 NM_022079 NM_022130 NM_022147 NM_022151 NM_022359 NM_022360 NM_022461 NM_022497 NM_022570 NM_022648 NM_022652 NM_022658 NM_022745 NM_022819 NM_022893 NM_022898 NM_023002 NM_023067 NM_023928 NM_024017 NM_024035 NM_024076 NM_024554 NM_024590 NM_024641 NM_024667 NM_024698 NM_024742 NM_024757 NM_024761 NM_024807 NM_024811 NM_024841 NM_024887 NM_024896 NM_024909 NM_025002 NM_025048 NM_025076 NM_025146 NM_025193 NM_025197 NM_025218 NM_030625 NM_030629 NM_030634 NM_030648 NM_030653 NM_030655 NM_030780 NM_031244 NM_031297 NM_031310 NM_031411 NM_031417 NM_031426 NM_031432 NM_031849 NM_031857 NM_031860 NM_031949 NM_032023 NM_032041 NM_032117 NM_032153 NM_032208 NM_032255 NM_032289 NM_032373 NM_032390 NM_032434 NM_032510 NM_032523 NM_032608 NM_032621 NM_032706 NM_032711 NM_032811 NM_032813 NM_032838 NM_032869 NM_032875 NM_033160 NM_033210 NM_033260 NM_033274 NM_033315 NM_033389 NM_033419 NM_033425 NM_033503 NM_033631 NM_033642 NM_052839 NM_052847 NM_052879 NM_052923 NM_053056 NM_057158 NM_057169 NM_057170 NM_080646 NM_080668 NM_080836 NM_080867 NM_130766 NM_130809 NM_133496 NM_133631 NM_134421 NM_134434 NM_138347 NM_138433 NM_138457 NM_138462 NM_138572 NM_138576 NM_138622 NM_138623 NM_138768 NM_138959 NM_138983 NM_139028 NM_139126 NM_139159 NM_139177 NM_139250 NM_139279 NM_144601 NM_144707 NM_144767 NM_145063 NM_145109 NM_145110 NM_145185 NM_145269 NM_145285 NM_145325 NM_145343 NM_145344 NM_145686 NM_145687 NM_145728 NM_145739 NM_145753 NM_145888 NM_145914 NM_147223 NM_147233 NM_148170 NM_148957 NM_152223 NM_152224 NM_152225 NM_152226 NM_152302 NM_152346 NM_152439 NM_152550 NM_152583 NM_152641 NM_152719 NM_152758 NM_152856 NM_152857 NM_152858 NM_152879 NM_152880 NM_152881 NM_152882 NM_152883 NM_152999 NM_153034 NM_153232 NM_153235 NM_153238 NM_153320 NM_153345 NM_153497 NM_170711 NM_170750 NM_171825 NM_172337 NM_172377 NM_173075 NM_173198 NM_173200 NM_173581 NM_173643 NM_173654 NM_173677 NM_173690 NM_173700 NM_175567 NM_175568 NM_175575 NM_175698 NM_175854 NM_175901 NM_175921 NM_176095 NM_176795 NM_177549 NM_177554 NM_177953 NM_178034 NM_178128 NM_178145 NM_178175 NM_178468 NM_178549 NM_178557 NM_178579 NM_181041 NM_181054 NM_181425 NM_181443 NM_181491 NM_181504 NM_181521 NM_181523 NM_181524 NM_181553 NM_181554 NM_181555 NM_181701 NM_181776 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181836 NM_182487 NM_182511 NM_182551 NM_182560 NM_182564 NM_182568 NM_182609 NM_182700 NM_182734 NM_182827 NM_182923 NM_182970 NM_183376 NM_194071 NM_197947 NM_197948 NM_197949 NM_197950 NM_197951 NM_197952 NM_197953 NM_198077 NM_198196 NM_198266 NM_198334 NM_198335 NM_198390 NM_198479 NM_198530 NM_198553 NM_198563 NM_198582 NM_198705 NM_198706 NM_198707 NM_198708 NM_198793 NM_198797 NM_198829 NM_198956 NM_198968 NM_199040 NM_199188 NM_199190 NM_199330 NM_199331 NM_199332 NM_199413 NM_199414 NM_199421 NM_201268 NM_201348 NM_201432 NM_201433 NM_203327 NM_203434 NM_203459 NM_203487 NM_205861 NM_207003 NM_207111 NM_207116 NM_207117 NM_207356 NM_207385 NM_207400 NM_207440 NM_207445 NM_207447 NM_207454 NM_207467 NM_207472 NM_213568 NM_213598 NM_213612 XM_031689 XM_040592 XM_041126 XM_048128 XM_058513 XM_058628 XM_086409 XM_087137 XM_087386 XM_088768 XM_113947 XM_208058 XM_209741 XM_290502 XM_290579 XM_290842 XM_294450 XM_295178 XM_350880 XM_370665 XM_370837 XM_370843 XM_370917 XM_370932 XM_371664 XM_371933 XM_372198 XM_372267 XM_373786 XM_373798 XM_373930 XM_374168 XM_374491 XM_374803 XM_375152 XM_375491 XM_375558 XM_375608 XM_375697 XM_376269 XM_376334 XM_376386 XM_376412 XM_376680 XM_376720 XM_376821 XM_378273 XM_378355 XM_378379 XM_378399 XM_378456 XM_378512 XM_378517 XM_378523 XM_378535 XM_378558 XM_378661 XM_378678 XM_378799 XM_378859 XM_378860 XM_378866 XM_378970 XM_378973 XM_379006 XM_379030 XM_379041 XM_379060 XM_379097 XM_379161 XM_379194 XM_379228 XM_379381 XM_379452 XM_379456 XM_379547 XM_379595 XM_379934 XM_379967 XM_495908 XM_495918 XM_496351 XM_496358 XM_496766 XM_496889 XM_496943 XM_497185 XM_498444 XM_498474 XM_498508 XM_498567 XM_498569 XM_498572 XM_498611 XM_498666 XM_498814 XM_498899 XM_498949 XM_498972 XM_499051 XM_499056 XM_499111 XM_499164 XM_499309 XM_499312 XM_499503 XM_499574 XM_499602 XR_000167 XR_000192 XR_000227 XR_000268
Genes with multiple seed matches:
NM_000451 NM_000527 NM_001001688 NM_001002257 NM_001003665 NM_001005303 NM_001007466 NM_001010925 NM_001012733 NM_001014283 NM_001483 NM_003108 NM_003165 NM_003400 NM_003644 NM_003981 NM_004834 NM_005116 NM_005737 NM_012102 NM_014138 NM_014631 NM_015455 NM_016376 NM_018185 NM_018273 NM_020245 NM_020697 NM_021155 NM_024017 NM_052879 NM_133496 NM_145063 NM_145686 NM_145687 NM_152758 NM_178468 NM_182551 NM_194071 NM_199188 NM_199190 NM_199413 NM_199414 NM_201432 NM_201433 NM_203327 NM_213598 XM_290502 XM_378661 XM_498567
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)