VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"aauacacacaaucgacggcuc"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1305
.
Total Genes with multiple seed matches:
67
.
Genes with at least one seed match:
NM_000037 NM_000068 NM_000091 NM_000109 NM_000131 NM_000149 NM_000154 NM_000191 NM_000202 NM_000246 NM_000268 NM_000297 NM_000304 NM_000330 NM_000334 NM_000373 NM_000398 NM_000430 NM_000452 NM_000463 NM_000551 NM_000565 NM_000576 NM_000610 NM_000611 NM_000614 NM_000616 NM_000676 NM_000684 NM_000685 NM_000704 NM_000705 NM_000789 NM_000792 NM_000795 NM_000833 NM_000837 NM_000897 NM_000903 NM_000911 NM_000934 NM_000997 NM_001001188 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001001502 NM_001001549 NM_001001550 NM_001001555 NM_001001684 NM_001001685 NM_001001690 NM_001001699 NM_001001894 NM_001001928 NM_001001929 NM_001001930 NM_001002861 NM_001003399 NM_001003676 NM_001003684 NM_001003794 NM_001003799 NM_001003940 NM_001003942 NM_001003943 NM_001004306 NM_001004432 NM_001004720 NM_001004722 NM_001005242 NM_001005336 NM_001005356 NM_001005357 NM_001005407 NM_001005498 NM_001005527 NM_001005611 NM_001005920 NM_001006606 NM_001007156 NM_001007262 NM_001007468 NM_001007543 NM_001008410 NM_001008756 NM_001009184 NM_001009811 NM_001009820 NM_001009894 NM_001010867 NM_001010910 NM_001012418 NM_001012651 NM_001012659 NM_001013622 NM_001013633 NM_001013640 NM_001013655 NM_001013656 NM_001013673 NM_001013675 NM_001013678 NM_001013691 NM_001013704 NM_001013710 NM_001013717 NM_001013718 NM_001013721 NM_001014283 NM_001014440 NM_001014796 NM_001014987 NM_001014988 NM_001014989 NM_001015045 NM_001015886 NM_001017440 NM_001017924 NM_001018009 NM_001018029 NM_001024401 NM_001024592 NM_001024655 NM_001024680 NM_001024736 NM_001024807 NM_001024845 NM_001025068 NM_001025069 NM_001038 NM_001044 NM_001072 NM_001103 NM_001140 NM_001147 NM_001155 NM_001172 NM_001206 NM_001230 NM_001251 NM_001282 NM_001283 NM_001286 NM_001297 NM_001303 NM_001305 NM_001306 NM_001319 NM_001327 NM_001332 NM_001381 NM_001394 NM_001423 NM_001427 NM_001458 NM_001518 NM_001532 NM_001543 NM_001605 NM_001624 NM_001642 NM_001702 NM_001722 NM_001789 NM_001830 NM_001913 NM_001941 NM_002012 NM_002023 NM_002060 NM_002062 NM_002071 NM_002078 NM_002105 NM_002127 NM_002141 NM_002203 NM_002213 NM_002225 NM_002229 NM_002251 NM_002254 NM_002314 NM_002340 NM_002349 NM_002357 NM_002361 NM_002460 NM_002480 NM_002586 NM_002596 NM_002597 NM_002605 NM_002613 NM_002614 NM_002638 NM_002656 NM_002695 NM_002725 NM_002737 NM_002738 NM_002744 NM_002804 NM_002808 NM_002834 NM_002904 NM_002911 NM_002929 NM_002989 NM_002990 NM_003013 NM_003021 NM_003025 NM_003053 NM_003061 NM_003073 NM_003085 NM_003088 NM_003108 NM_003168 NM_003224 NM_003249 NM_003260 NM_003307 NM_003316 NM_003320 NM_003338 NM_003382 NM_003449 NM_003462 NM_003481 NM_003483 NM_003486 NM_003505 NM_003511 NM_003581 NM_003605 NM_003607 NM_003624 NM_003646 NM_003658 NM_003681 NM_003684 NM_003820 NM_003873 NM_003913 NM_003925 NM_003926 NM_003950 NM_003979 NM_003983 NM_004006 NM_004007 NM_004009 NM_004010 NM_004011 NM_004012 NM_004013 NM_004014 NM_004015 NM_004016 NM_004017 NM_004018 NM_004020 NM_004021 NM_004022 NM_004023 NM_004033 NM_004040 NM_004059 NM_004116 NM_004171 NM_004198 NM_004200 NM_004205 NM_004207 NM_004238 NM_004265 NM_004302 NM_004311 NM_004321 NM_004339 NM_004344 NM_004369 NM_004386 NM_004393 NM_004408 NM_004429 NM_004440 NM_004513 NM_004518 NM_004542 NM_004561 NM_004571 NM_004572 NM_004584 NM_004588 NM_004590 NM_004610 NM_004612 NM_004709 NM_004711 NM_004715 NM_004716 NM_004729 NM_004745 NM_004747 NM_004762 NM_004796 NM_004835 NM_004844 NM_004865 NM_004924 NM_004984 NM_004996 NM_004997 NM_004999 NM_005026 NM_005036 NM_005082 NM_005093 NM_005098 NM_005110 NM_005116 NM_005148 NM_005157 NM_005166 NM_005188 NM_005202 NM_005226 NM_005238 NM_005253 NM_005270 NM_005311 NM_005320 NM_005325 NM_005357 NM_005369 NM_005413 NM_005491 NM_005507 NM_005626 NM_005629 NM_005658 NM_005668 NM_005683 NM_005692 NM_005698 NM_005704 NM_005789 NM_005858 NM_005860 NM_005894 NM_005902 NM_005904 NM_005906 NM_005942 NM_005943 NM_005957 NM_005986 NM_006011 NM_006018 NM_006026 NM_006035 NM_006037 NM_006038 NM_006121 NM_006131 NM_006132 NM_006133 NM_006134 NM_006137 NM_006182 NM_006203 NM_006242 NM_006265 NM_006315 NM_006351 NM_006378 NM_006390 NM_006407 NM_006420 NM_006423 NM_006464 NM_006504 NM_006505 NM_006516 NM_006546 NM_006547 NM_006598 NM_006602 NM_006613 NM_006675 NM_006718 NM_006749 NM_006767 NM_006858 NM_006867 NM_006869 NM_006888 NM_006916 NM_006934 NM_006984 NM_007120 NM_007211 NM_007221 NM_007238 NM_007247 NM_007271 NM_007283 NM_007313 NM_007320 NM_007322 NM_007326 NM_007335 NM_007345 NM_007353 NM_009585 NM_012102 NM_012105 NM_012108 NM_012115 NM_012164 NM_012172 NM_012219 NM_012234 NM_012275 NM_012306 NM_012309 NM_012326 NM_012396 NM_012398 NM_012399 NM_012402 NM_012455 NM_012458 NM_012465 NM_012471 NM_013275 NM_013278 NM_013279 NM_013290 NM_013364 NM_013384 NM_013387 NM_013403 NM_013438 NM_013447 NM_014005 NM_014023 NM_014035 NM_014066 NM_014157 NM_014211 NM_014246 NM_014286 NM_014319 NM_014321 NM_014324 NM_014329 NM_014333 NM_014344 NM_014354 NM_014360 NM_014387 NM_014388 NM_014405 NM_014417 NM_014425 NM_014460 NM_014479 NM_014485 NM_014516 NM_014586 NM_014587 NM_014644 NM_014646 NM_014665 NM_014700 NM_014703 NM_014714 NM_014731 NM_014732 NM_014751 NM_014776 NM_014826 NM_014838 NM_014844 NM_014859 NM_014862 NM_014867 NM_014883 NM_014916 NM_014924 NM_014947 NM_014956 NM_014984 NM_014988 NM_014996 NM_015005 NM_015011 NM_015025 NM_015039 NM_015059 NM_015074 NM_015085 NM_015101 NM_015103 NM_015140 NM_015144 NM_015198 NM_015202 NM_015229 NM_015266 NM_015288 NM_015328 NM_015355 NM_015359 NM_015375 NM_015386 NM_015411 NM_015417 NM_015447 NM_015493 NM_015497 NM_015544 NM_015553 NM_015559 NM_015565 NM_015622 NM_015644 NM_015695 NM_015704 NM_015715 NM_015833 NM_015834 NM_015894 NM_015937 NM_015949 NM_015983 NM_016033 NM_016048 NM_016095 NM_016101 NM_016196 NM_016201 NM_016205 NM_016210 NM_016240 NM_016376 NM_016418 NM_016426 NM_016497 NM_016556 NM_016561 NM_016574 NM_016577 NM_016601 NM_016606 NM_016735 NM_017415 NM_017433 NM_017456 NM_017495 NM_017542 NM_017583 NM_017590 NM_017599 NM_017622 NM_017628 NM_017712 NM_017820 NM_017868 NM_017921 NM_017996 NM_018091 NM_018111 NM_018115 NM_018150 NM_018185 NM_018191 NM_018198 NM_018234 NM_018235 NM_018238 NM_018265 NM_018367 NM_018383 NM_018385 NM_018390 NM_018409 NM_018439 NM_018450 NM_018644 NM_018646 NM_018717 NM_018963 NM_019075 NM_019076 NM_019077 NM_019078 NM_019093 NM_019094 NM_019601 NM_019616 NM_019862 NM_019898 NM_019899 NM_019900 NM_019901 NM_019902 NM_020038 NM_020062 NM_020132 NM_020159 NM_020210 NM_020219 NM_020326 NM_020338 NM_020341 NM_020398 NM_020405 NM_020440 NM_020443 NM_020475 NM_020476 NM_020477 NM_020524 NM_020546 NM_020548 NM_020648 NM_020699 NM_020713 NM_020714 NM_020742 NM_020761 NM_020809 NM_020836 NM_020839 NM_020850 NM_020851 NM_020858 NM_020861 NM_020873 NM_020918 NM_020954 NM_020956 NM_020960 NM_020972 NM_020988 NM_020994 NM_021020 NM_021027 NM_021058 NM_021064 NM_021098 NM_021102 NM_021120 NM_021146 NM_021155 NM_021164 NM_021252 NM_021612 NM_021628 NM_021637 NM_021643 NM_021648 NM_021735 NM_021736 NM_021737 NM_021784 NM_021785 NM_021823 NM_021945 NM_022075 NM_022085 NM_022119 NM_022153 NM_022351 NM_022459 NM_022463 NM_022470 NM_022482 NM_022496 NM_022497 NM_022576 NM_022769 NM_022821 NM_022836 NM_022898 NM_022905 NM_023007 NM_023067 NM_023078 NM_023931 NM_023938 NM_024025 NM_024034 NM_024035 NM_024052 NM_024085 NM_024342 NM_024423 NM_024512 NM_024522 NM_024535 NM_024554 NM_024591 NM_024599 NM_024608 NM_024656 NM_024701 NM_024729 NM_024761 NM_024807 NM_024843 NM_024866 NM_024871 NM_024893 NM_024894 NM_024900 NM_024935 NM_024940 NM_024954 NM_025041 NM_025091 NM_025097 NM_025109 NM_025140 NM_025158 NM_025164 NM_025224 NM_025225 NM_025237 NM_025240 NM_025250 NM_030379 NM_030380 NM_030381 NM_030582 NM_030665 NM_030774 NM_030775 NM_030796 NM_030808 NM_030810 NM_030817 NM_030935 NM_031208 NM_031211 NM_031227 NM_031228 NM_031268 NM_031273 NM_031362 NM_031363 NM_031364 NM_031365 NM_031366 NM_031443 NM_031445 NM_031468 NM_031478 NM_031850 NM_031890 NM_032019 NM_032021 NM_032028 NM_032041 NM_032049 NM_032179 NM_032213 NM_032221 NM_032222 NM_032242 NM_032262 NM_032283 NM_032329 NM_032350 NM_032385 NM_032423 NM_032432 NM_032445 NM_032449 NM_032499 NM_032529 NM_032554 NM_032581 NM_032630 NM_032642 NM_032753 NM_032780 NM_032797 NM_032819 NM_032932 NM_032973 NM_032976 NM_032977 NM_032999 NM_033000 NM_033001 NM_033045 NM_033083 NM_033102 NM_033112 NM_033131 NM_033207 NM_033224 NM_033229 NM_033259 NM_033271 NM_033274 NM_033291 NM_033396 NM_033428 NM_033446 NM_033503 NM_033506 NM_048368 NM_052837 NM_052845 NM_052847 NM_052898 NM_052928 NM_052934 NM_053056 NM_053067 NM_053286 NM_054025 NM_054033 NM_054035 NM_057158 NM_057164 NM_057165 NM_057166 NM_057167 NM_057169 NM_057170 NM_058217 NM_079834 NM_080429 NM_080542 NM_080543 NM_080550 NM_080551 NM_080600 NM_080621 NM_080927 NM_130435 NM_130444 NM_130445 NM_130459 NM_130466 NM_130792 NM_133177 NM_133178 NM_133334 NM_133367 NM_133369 NM_133463 NM_133476 NM_133480 NM_133481 NM_133490 NM_138293 NM_138298 NM_138372 NM_138428 NM_138451 NM_138468 NM_138567 NM_138575 NM_138576 NM_138620 NM_138697 NM_138771 NM_138805 NM_138928 NM_138970 NM_138991 NM_138992 NM_139016 NM_139214 NM_139250 NM_139279 NM_139280 NM_144570 NM_144579 NM_144583 NM_144671 NM_145013 NM_145065 NM_145117 NM_145691 NM_145735 NM_145754 NM_145818 NM_147192 NM_148171 NM_148968 NM_148969 NM_148971 NM_148972 NM_148973 NM_148974 NM_152240 NM_152253 NM_152268 NM_152274 NM_152275 NM_152317 NM_152339 NM_152340 NM_152353 NM_152488 NM_152507 NM_152527 NM_152552 NM_152554 NM_152619 NM_152624 NM_152635 NM_152675 NM_152689 NM_152702 NM_152744 NM_152749 NM_152760 NM_152785 NM_152789 NM_152793 NM_152830 NM_152840 NM_152842 NM_152864 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_153029 NM_153239 NM_153320 NM_153321 NM_153322 NM_153355 NM_153367 NM_153442 NM_153487 NM_153613 NM_153616 NM_153617 NM_153618 NM_153619 NM_153620 NM_153675 NM_153701 NM_153756 NM_153837 NM_156036 NM_170706 NM_170768 NM_172020 NM_172037 NM_172217 NM_172225 NM_172346 NM_172377 NM_173060 NM_173075 NM_173164 NM_173170 NM_173342 NM_173454 NM_173455 NM_173456 NM_173457 NM_173476 NM_173491 NM_173511 NM_173532 NM_173551 NM_173582 NM_173583 NM_173654 NM_173683 NM_173689 NM_173829 NM_174918 NM_174972 NM_175056 NM_175571 NM_175616 NM_175622 NM_175709 NM_175736 NM_175864 NM_175885 NM_175901 NM_175908 NM_176792 NM_176863 NM_177539 NM_177540 NM_177541 NM_177551 NM_177972 NM_177990 NM_177999 NM_178191 NM_178225 NM_178226 NM_178505 NM_178516 NM_178568 NM_178835 NM_181332 NM_181359 NM_181500 NM_181502 NM_181504 NM_181523 NM_181524 NM_181654 NM_181709 NM_181718 NM_181746 NM_181776 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182481 NM_182484 NM_182501 NM_182522 NM_182533 NM_182573 NM_182585 NM_182587 NM_182610 NM_182700 NM_182701 NM_182740 NM_182798 NM_182799 NM_182801 NM_182812 NM_182832 NM_182848 NM_182915 NM_182933 NM_182964 NM_183040 NM_183239 NM_183241 NM_183245 NM_183397 NM_183414 NM_183415 NM_183425 NM_194278 NM_194352 NM_197941 NM_197976 NM_198097 NM_198156 NM_198317 NM_198399 NM_198452 NM_198484 NM_198485 NM_198555 NM_198682 NM_198705 NM_198706 NM_198707 NM_198708 NM_198851 NM_198900 NM_198907 NM_198925 NM_198943 NM_198956 NM_199040 NM_199050 NM_199054 NM_199069 NM_199070 NM_199073 NM_199074 NM_199163 NM_199175 NM_199182 NM_199229 NM_199334 NM_199417 NM_199462 NM_201348 NM_201399 NM_201532 NM_201533 NM_201565 NM_201567 NM_201649 NM_203293 NM_203294 NM_203295 NM_203296 NM_203297 NM_203306 NM_203327 NM_203329 NM_203330 NM_203331 NM_203382 NM_203411 NM_203445 NM_203453 NM_205857 NM_205862 NM_206835 NM_207006 NM_207125 NM_207129 NM_207358 NM_207370 NM_207384 NM_207385 NM_207388 NM_207389 NM_207405 NM_207419 NM_207440 NM_207442 NM_207451 NM_207453 NM_207462 NM_207477 NM_207479 NM_207504 NM_207510 NM_207513 NM_207644 NM_212502 NM_212503 NM_213593 NM_213609 NM_214677 NM_214711 XM_028810 XM_032996 XM_037523 XM_039393 XM_044434 XM_045911 XM_048898 XM_051017 XM_065166 XM_113743 XM_117408 XM_166132 XM_166164 XM_290401 XM_290502 XM_290546 XM_290712 XM_291671 XM_371399 XM_371474 XM_371501 XM_371691 XM_371933 XM_372038 XM_372193 XM_373431 XM_373666 XM_373789 XM_373795 XM_374086 XM_374110 XM_374152 XM_374249 XM_374296 XM_374491 XM_375042 XM_375373 XM_375456 XM_375527 XM_375589 XM_375697 XM_376018 XM_376148 XM_376189 XM_376677 XM_376821 XM_376902 XM_376981 XM_377028 XM_377073 XM_378379 XM_378437 XM_378491 XM_378542 XM_378608 XM_378623 XM_378643 XM_378648 XM_378661 XM_378685 XM_378698 XM_378708 XM_378758 XM_378760 XM_378783 XM_378787 XM_378791 XM_378798 XM_378810 XM_378835 XM_378858 XM_378946 XM_379023 XM_379044 XM_379060 XM_379086 XM_379141 XM_379184 XM_379267 XM_379309 XM_379378 XM_379380 XM_379398 XM_379403 XM_379452 XM_379456 XM_379458 XM_379474 XM_379535 XM_379547 XM_379595 XM_379622 XM_379634 XM_379639 XM_379840 XM_379877 XM_379927 XM_379931 XM_380089 XM_380160 XM_495848 XM_495888 XM_496335 XM_496575 XM_496637 XM_496836 XM_496895 XM_496907 XM_496985 XM_497056 XM_498510 XM_498567 XM_498576 XM_498577 XM_498596 XM_498647 XM_498662 XM_498673 XM_498676 XM_498713 XM_498715 XM_498723 XM_498841 XM_498844 XM_498861 XM_498882 XM_498883 XM_498899 XM_498917 XM_498958 XM_498972 XM_499008 XM_499029 XM_499046 XM_499050 XM_499051 XM_499056 XM_499085 XM_499093 XM_499139 XM_499140 XM_499146 XM_499323 XM_499343 XM_499503 XR_000266
Genes with multiple seed matches:
NM_001001188 NM_001013622 NM_001427 NM_001543 NM_002738 NM_003307 NM_003449 NM_004200 NM_004518 NM_004747 NM_005157 NM_005253 NM_005629 NM_005658 NM_005668 NM_006132 NM_006315 NM_006505 NM_006516 NM_007313 NM_007353 NM_013403 NM_014354 NM_014586 NM_014859 NM_014956 NM_015005 NM_015493 NM_017921 NM_020918 NM_021945 NM_022898 NM_024342 NM_024761 NM_024843 NM_025091 NM_031363 NM_031364 NM_032028 NM_032329 NM_032445 NM_033446 NM_052847 NM_133334 NM_138298 NM_138576 NM_139279 NM_145065 NM_145735 NM_148171 NM_152554 NM_153239 NM_178516 NM_183414 NM_183425 NM_198452 NM_203445 XM_290502 XM_375527 XM_376018 XM_378623 XM_378810 XM_379023 XM_379595 XM_379622 XM_498715 XM_499093
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)