VIRsiRNAdb
Database of Viral siRNA / shRNA
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Predicted off-targets seeds for siRNA
"aauugugaccagaccgcucau"
Using
siRNA Seed Locator
Algorithm
siRNA Seed Locator
Total Genes with at least one seed match :
1320
.
Total Genes with multiple seed matches:
81
.
Genes with at least one seed match:
NM_000021 NM_000087 NM_000120 NM_000164 NM_000176 NM_000182 NM_000216 NM_000244 NM_000254 NM_000264 NM_000268 NM_000271 NM_000287 NM_000296 NM_000334 NM_000349 NM_000395 NM_000398 NM_000410 NM_000413 NM_000486 NM_000491 NM_000525 NM_000526 NM_000599 NM_000611 NM_000633 NM_000663 NM_000664 NM_000705 NM_000718 NM_000747 NM_000837 NM_000897 NM_001001336 NM_001001349 NM_001001686 NM_001001688 NM_001001693 NM_001001791 NM_001001924 NM_001001925 NM_001001927 NM_001001928 NM_001001929 NM_001001930 NM_001001931 NM_001002231 NM_001002232 NM_001002296 NM_001002762 NM_001002860 NM_001002861 NM_001002881 NM_001003407 NM_001003408 NM_001003656 NM_001003698 NM_001003699 NM_001003794 NM_001004127 NM_001004285 NM_001004286 NM_001004302 NM_001004326 NM_001004347 NM_001004360 NM_001004720 NM_001004722 NM_001005360 NM_001005361 NM_001005362 NM_001005387 NM_001005388 NM_001005409 NM_001006115 NM_001006606 NM_001006634 NM_001006636 NM_001006638 NM_001006656 NM_001006932 NM_001006946 NM_001007071 NM_001007097 NM_001007122 NM_001007243 NM_001007278 NM_001007534 NM_001008539 NM_001008563 NM_001008658 NM_001008895 NM_001008925 NM_001009184 NM_001009566 NM_001009812 NM_001009820 NM_001009880 NM_001009883 NM_001009922 NM_001009944 NM_001009956 NM_001009960 NM_001010854 NM_001010871 NM_001010874 NM_001010888 NM_001010898 NM_001010911 NM_001010915 NM_001010980 NM_001010982 NM_001011514 NM_001011546 NM_001012329 NM_001012418 NM_001012426 NM_001012427 NM_001012715 NM_001012958 NM_001012959 NM_001012982 NM_001013655 NM_001013669 NM_001013672 NM_001013698 NM_001013701 NM_001013707 NM_001013710 NM_001013720 NM_001013721 NM_001013723 NM_001013728 NM_001013839 NM_001014797 NM_001015886 NM_001017396 NM_001017924 NM_001017965 NM_001017989 NM_001017995 NM_001018050 NM_001018051 NM_001018052 NM_001018074 NM_001018075 NM_001018076 NM_001018077 NM_001018082 NM_001020825 NM_001023563 NM_001024094 NM_001024226 NM_001024227 NM_001024228 NM_001024646 NM_001025076 NM_001025077 NM_001025105 NM_001025201 NM_001116 NM_001132 NM_001194 NM_001196 NM_001224 NM_001229 NM_001243 NM_001246 NM_001286 NM_001296 NM_001395 NM_001419 NM_001456 NM_001470 NM_001535 NM_001658 NM_001702 NM_001707 NM_001709 NM_001752 NM_001822 NM_001830 NM_001892 NM_001901 NM_001914 NM_001929 NM_001958 NM_001979 NM_001987 NM_002026 NM_002062 NM_002064 NM_002081 NM_002103 NM_002111 NM_002180 NM_002220 NM_002249 NM_002264 NM_002313 NM_002318 NM_002359 NM_002416 NM_002469 NM_002478 NM_002501 NM_002522 NM_002541 NM_002582 NM_002604 NM_002605 NM_002611 NM_002613 NM_002622 NM_002636 NM_002695 NM_002725 NM_002740 NM_002821 NM_002827 NM_002866 NM_002883 NM_002901 NM_002926 NM_002938 NM_002939 NM_002945 NM_002955 NM_002995 NM_002997 NM_003021 NM_003023 NM_003033 NM_003045 NM_003046 NM_003102 NM_003106 NM_003149 NM_003189 NM_003190 NM_003214 NM_003216 NM_003255 NM_003297 NM_003300 NM_003319 NM_003320 NM_003344 NM_003356 NM_003382 NM_003388 NM_003458 NM_003479 NM_003483 NM_003486 NM_003490 NM_003542 NM_003581 NM_003589 NM_003632 NM_003681 NM_003740 NM_003749 NM_003759 NM_003784 NM_003804 NM_003820 NM_003833 NM_003842 NM_003846 NM_003888 NM_003930 NM_003936 NM_003938 NM_003952 NM_003963 NM_004220 NM_004227 NM_004286 NM_004287 NM_004302 NM_004308 NM_004316 NM_004339 NM_004402 NM_004423 NM_004442 NM_004459 NM_004474 NM_004475 NM_004530 NM_004578 NM_004710 NM_004727 NM_004734 NM_004736 NM_004763 NM_004772 NM_004836 NM_004850 NM_004945 NM_005026 NM_005036 NM_005063 NM_005093 NM_005096 NM_005103 NM_005137 NM_005148 NM_005157 NM_005170 NM_005202 NM_005226 NM_005232 NM_005253 NM_005255 NM_005291 NM_005304 NM_005336 NM_005370 NM_005392 NM_005417 NM_005431 NM_005458 NM_005523 NM_005550 NM_005551 NM_005598 NM_005608 NM_005632 NM_005674 NM_005699 NM_005715 NM_005766 NM_005798 NM_005823 NM_005851 NM_005877 NM_005883 NM_005904 NM_005941 NM_005942 NM_005943 NM_005957 NM_005965 NM_005975 NM_005986 NM_006092 NM_006097 NM_006116 NM_006131 NM_006156 NM_006203 NM_006206 NM_006238 NM_006272 NM_006276 NM_006285 NM_006315 NM_006336 NM_006341 NM_006349 NM_006361 NM_006374 NM_006380 NM_006455 NM_006464 NM_006466 NM_006517 NM_006539 NM_006540 NM_006561 NM_006598 NM_006606 NM_006676 NM_006720 NM_006761 NM_006795 NM_006870 NM_006915 NM_007050 NM_007165 NM_007174 NM_007189 NM_007199 NM_007214 NM_007236 NM_007245 NM_007283 NM_007313 NM_007318 NM_007326 NM_007327 NM_007353 NM_009586 NM_012081 NM_012121 NM_012134 NM_012218 NM_012232 NM_012282 NM_012285 NM_012304 NM_012316 NM_012336 NM_012398 NM_012407 NM_012429 NM_012447 NM_012465 NM_013231 NM_013246 NM_013301 NM_013333 NM_013345 NM_013364 NM_013396 NM_013404 NM_013416 NM_014033 NM_014057 NM_014213 NM_014268 NM_014278 NM_014289 NM_014293 NM_014351 NM_014354 NM_014391 NM_014398 NM_014480 NM_014498 NM_014587 NM_014603 NM_014604 NM_014631 NM_014648 NM_014665 NM_014698 NM_014716 NM_014732 NM_014737 NM_014792 NM_014798 NM_014800 NM_014801 NM_014808 NM_014837 NM_014839 NM_014844 NM_014859 NM_014862 NM_014870 NM_014890 NM_014895 NM_014897 NM_014903 NM_014909 NM_014914 NM_014924 NM_014935 NM_014944 NM_014945 NM_014947 NM_014957 NM_014962 NM_014963 NM_014964 NM_014974 NM_015015 NM_015020 NM_015033 NM_015035 NM_015040 NM_015063 NM_015069 NM_015074 NM_015078 NM_015086 NM_015090 NM_015111 NM_015124 NM_015191 NM_015205 NM_015206 NM_015219 NM_015225 NM_015246 NM_015253 NM_015264 NM_015266 NM_015278 NM_015288 NM_015289 NM_015310 NM_015318 NM_015321 NM_015329 NM_015347 NM_015359 NM_015367 NM_015374 NM_015428 NM_015436 NM_015438 NM_015447 NM_015488 NM_015506 NM_015541 NM_015557 NM_015558 NM_015569 NM_015677 NM_015691 NM_015715 NM_015719 NM_015833 NM_015836 NM_015894 NM_016095 NM_016099 NM_016124 NM_016169 NM_016225 NM_016275 NM_016337 NM_016358 NM_016362 NM_016376 NM_016390 NM_016418 NM_016538 NM_016559 NM_016588 NM_016611 NM_016612 NM_016652 NM_016734 NM_017410 NM_017413 NM_017424 NM_017436 NM_017449 NM_017509 NM_017516 NM_017588 NM_017595 NM_017709 NM_017712 NM_017752 NM_017799 NM_017933 NM_017966 NM_017986 NM_018013 NM_018048 NM_018054 NM_018135 NM_018171 NM_018189 NM_018205 NM_018209 NM_018239 NM_018280 NM_018344 NM_018374 NM_018385 NM_018389 NM_018423 NM_018461 NM_018509 NM_018579 NM_018653 NM_018655 NM_018660 NM_018708 NM_018719 NM_018947 NM_018976 NM_018998 NM_019009 NM_019040 NM_019854 NM_020038 NM_020119 NM_020132 NM_020139 NM_020201 NM_020208 NM_020215 NM_020227 NM_020248 NM_020313 NM_020338 NM_020381 NM_020382 NM_020462 NM_020485 NM_020632 NM_020661 NM_020686 NM_020689 NM_020695 NM_020713 NM_020731 NM_020737 NM_020742 NM_020749 NM_020777 NM_020778 NM_020796 NM_020818 NM_020850 NM_020851 NM_020868 NM_020888 NM_020897 NM_020947 NM_020954 NM_020988 NM_020999 NM_021003 NM_021012 NM_021020 NM_021079 NM_021080 NM_021088 NM_021116 NM_021135 NM_021149 NM_021153 NM_021155 NM_021158 NM_021168 NM_021267 NM_021569 NM_021638 NM_021643 NM_021735 NM_021736 NM_021737 NM_021808 NM_021809 NM_021903 NM_021904 NM_021905 NM_021925 NM_021931 NM_021949 NM_022036 NM_022042 NM_022097 NM_022124 NM_022334 NM_022343 NM_022405 NM_022469 NM_022470 NM_022480 NM_022491 NM_022572 NM_022764 NM_022768 NM_022786 NM_023006 NM_023018 NM_023946 NM_024032 NM_024034 NM_024074 NM_024107 NM_024306 NM_024328 NM_024416 NM_024507 NM_024509 NM_024511 NM_024517 NM_024541 NM_024551 NM_024558 NM_024573 NM_024585 NM_024595 NM_024645 NM_024650 NM_024653 NM_024659 NM_024709 NM_024718 NM_024738 NM_024759 NM_024794 NM_024958 NM_025010 NM_025042 NM_025129 NM_025161 NM_025164 NM_025204 NM_025218 NM_025224 NM_025250 NM_030590 NM_030592 NM_030622 NM_030626 NM_030639 NM_030640 NM_030665 NM_030781 NM_030798 NM_030915 NM_030918 NM_030925 NM_030980 NM_031211 NM_031268 NM_031417 NM_031439 NM_031444 NM_031445 NM_031448 NM_031449 NM_031450 NM_031484 NM_031913 NM_031945 NM_031968 NM_032019 NM_032023 NM_032038 NM_032039 NM_032042 NM_032046 NM_032109 NM_032125 NM_032134 NM_032152 NM_032153 NM_032189 NM_032246 NM_032262 NM_032276 NM_032287 NM_032325 NM_032329 NM_032358 NM_032385 NM_032389 NM_032410 NM_032421 NM_032429 NM_032466 NM_032468 NM_032510 NM_032529 NM_032622 NM_032711 NM_032732 NM_032792 NM_032799 NM_032809 NM_032818 NM_032829 NM_032932 NM_032983 NM_032984 NM_032996 NM_033014 NM_033064 NM_033085 NM_033086 NM_033133 NM_033161 NM_033259 NM_033315 NM_033342 NM_033387 NM_033400 NM_033405 NM_033409 NM_033410 NM_033420 NM_033426 NM_033446 NM_033505 NM_052811 NM_052821 NM_052847 NM_052861 NM_052889 NM_052897 NM_052903 NM_052910 NM_052919 NM_052926 NM_052928 NM_052947 NM_052970 NM_052996 NM_053025 NM_053026 NM_053027 NM_053028 NM_053029 NM_053030 NM_053031 NM_053032 NM_053064 NM_054035 NM_058167 NM_058172 NM_058178 NM_058186 NM_058189 NM_058243 NM_078476 NM_078483 NM_080430 NM_080473 NM_080551 NM_080730 NM_080731 NM_080751 NM_080915 NM_080916 NM_080917 NM_080918 NM_130442 NM_130469 NM_130799 NM_130800 NM_130801 NM_130802 NM_130803 NM_130804 NM_130830 NM_130840 NM_130841 NM_133170 NM_133171 NM_133328 NM_133334 NM_133378 NM_133432 NM_133437 NM_133448 NM_133632 NM_133633 NM_134434 NM_138293 NM_138298 NM_138320 NM_138321 NM_138338 NM_138350 NM_138385 NM_138423 NM_138434 NM_138450 NM_138457 NM_138479 NM_138494 NM_138501 NM_138563 NM_138564 NM_138616 NM_138617 NM_138618 NM_138764 NM_138928 NM_138934 NM_138958 NM_138983 NM_138992 NM_139002 NM_139016 NM_139057 NM_139164 NM_139179 NM_139248 NM_139282 NM_139319 NM_144613 NM_144671 NM_144692 NM_144707 NM_144726 NM_144980 NM_144994 NM_145035 NM_145039 NM_145040 NM_145166 NM_145272 NM_145273 NM_145285 NM_145347 NM_145348 NM_145725 NM_145726 NM_145818 NM_145912 NM_147131 NM_147132 NM_147187 NM_147194 NM_148894 NM_148921 NM_148923 NM_148961 NM_152240 NM_152264 NM_152287 NM_152288 NM_152330 NM_152333 NM_152334 NM_152348 NM_152383 NM_152458 NM_152488 NM_152499 NM_152515 NM_152525 NM_152545 NM_152547 NM_152558 NM_152600 NM_152618 NM_152619 NM_152636 NM_152673 NM_152680 NM_152689 NM_152727 NM_152880 NM_152881 NM_152882 NM_152883 NM_152934 NM_152942 NM_153029 NM_153033 NM_153035 NM_153239 NM_153254 NM_153273 NM_153442 NM_153462 NM_153463 NM_153487 NM_153685 NM_153752 NM_153837 NM_170696 NM_170697 NM_170731 NM_170732 NM_170733 NM_170734 NM_170735 NM_170773 NM_170774 NM_170781 NM_170782 NM_171999 NM_172101 NM_172102 NM_172213 NM_172239 NM_173042 NM_173043 NM_173044 NM_173156 NM_173344 NM_173354 NM_173454 NM_173455 NM_173456 NM_173457 NM_173551 NM_173575 NM_173588 NM_173624 NM_173635 NM_173640 NM_173653 NM_173680 NM_173687 NM_173793 NM_173795 NM_173800 NM_173805 NM_173808 NM_173828 NM_173855 NM_174891 NM_174929 NM_174952 NM_174975 NM_175058 NM_175066 NM_175567 NM_175568 NM_175609 NM_175709 NM_175736 NM_175747 NM_175834 NM_175852 NM_175864 NM_175898 NM_175901 NM_176874 NM_177405 NM_177458 NM_177539 NM_177952 NM_177972 NM_177974 NM_178014 NM_178145 NM_178225 NM_178226 NM_178448 NM_178527 NM_178539 NM_178557 NM_178831 NM_178832 NM_181293 NM_181298 NM_181299 NM_181332 NM_181337 NM_181443 NM_181484 NM_181489 NM_181504 NM_181523 NM_181524 NM_181526 NM_181718 NM_181785 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182487 NM_182528 NM_182531 NM_182533 NM_182538 NM_182562 NM_182564 NM_182623 NM_182641 NM_182697 NM_182758 NM_182764 NM_182791 NM_182812 NM_182894 NM_182970 NM_183382 NM_183385 NM_194071 NM_194294 NM_194315 NM_194316 NM_194457 NM_194458 NM_197956 NM_197966 NM_197967 NM_198138 NM_198271 NM_198291 NM_198478 NM_198510 NM_198537 NM_198554 NM_198572 NM_198582 NM_198586 NM_198595 NM_198681 NM_198686 NM_198687 NM_198720 NM_198722 NM_198835 NM_198900 NM_198907 NM_198935 NM_198946 NM_199182 NM_201263 NM_201348 NM_201520 NM_201546 NM_201568 NM_201569 NM_201599 NM_203304 NM_203329 NM_203330 NM_203331 NM_203346 NM_203383 NM_203384 NM_203385 NM_203386 NM_203387 NM_203388 NM_203389 NM_203422 NM_203423 NM_203434 NM_203436 NM_203468 NM_205857 NM_206833 NM_206962 NM_206964 NM_207119 NM_207362 NM_207379 NM_207380 NM_207383 NM_207391 NM_207395 NM_207405 NM_207440 NM_207448 NM_207451 NM_207454 NM_207462 NM_207470 NM_207472 NM_207473 NM_207478 NM_207483 NM_207581 NM_207645 NM_212464 NM_212467 NM_212474 NM_212475 NM_212476 NM_212478 NM_212482 NM_213590 NM_213597 NM_213606 NM_213613 XM_032996 XM_036942 XM_039393 XM_042833 XM_042936 XM_042978 XM_044062 XM_044178 XM_047355 XM_051017 XM_058628 XM_059037 XM_087353 XM_114166 XM_117117 XM_172801 XM_290712 XM_291204 XM_291671 XM_370838 XM_370932 XM_371074 XM_371151 XM_371184 XM_371302 XM_371304 XM_371461 XM_371717 XM_372019 XM_372028 XM_372030 XM_372267 XM_372273 XM_373500 XM_373561 XM_373786 XM_374162 XM_374315 XM_374343 XM_374437 XM_374945 XM_375065 XM_375558 XM_375608 XM_375629 XM_375698 XM_375713 XM_375803 XM_376303 XM_376454 XM_376567 XM_376720 XM_376784 XM_377041 XM_377076 XM_378202 XM_378299 XM_378301 XM_378360 XM_378374 XM_378394 XM_378399 XM_378456 XM_378487 XM_378544 XM_378620 XM_378623 XM_378625 XM_378692 XM_378698 XM_378703 XM_378730 XM_378786 XM_378787 XM_378822 XM_378824 XM_378855 XM_378914 XM_378983 XM_379029 XM_379065 XM_379068 XM_379096 XM_379097 XM_379102 XM_379118 XM_379234 XM_379243 XM_379276 XM_379309 XM_379378 XM_379391 XM_379403 XM_379452 XM_379456 XM_379459 XM_379535 XM_379597 XM_379636 XM_379637 XM_379664 XM_379665 XM_379774 XM_379858 XM_379927 XM_379967 XM_380160 XM_496061 XM_496086 XM_496111 XM_496143 XM_496349 XM_496603 XM_496724 XM_496836 XM_496889 XM_496904 XM_496976 XM_496981 XM_496982 XM_496984 XM_497080 XM_498429 XM_498459 XM_498469 XM_498491 XM_498532 XM_498587 XM_498614 XM_498633 XM_498646 XM_498687 XM_498693 XM_498751 XM_498876 XM_498883 XM_498894 XM_498897 XM_498933 XM_498958 XM_498972 XM_499041 XM_499047 XM_499051 XM_499147 XM_499170 XM_499312 XM_499314 XM_499336 XM_499495 XM_499502 XM_499558 XM_499589 XR_000167 XR_000182 XR_000259
Genes with multiple seed matches:
NM_000664 NM_001001791 NM_001006115 NM_001006946 NM_001007071 NM_001009812 NM_001132 NM_001830 NM_002081 NM_002359 NM_002945 NM_002997 NM_003045 NM_003102 NM_003382 NM_004772 NM_005093 NM_005137 NM_005417 NM_005608 NM_005632 NM_006315 NM_006598 NM_007214 NM_013301 NM_014792 NM_014801 NM_014808 NM_014862 NM_014924 NM_014957 NM_014974 NM_015246 NM_015289 NM_015488 NM_015558 NM_015569 NM_018013 NM_021116 NM_021267 NM_022572 NM_024511 NM_024709 NM_024718 NM_025250 NM_031417 NM_032039 NM_032109 NM_032287 NM_032711 NM_033387 NM_052919 NM_053029 NM_130830 NM_138992 NM_145912 NM_152547 NM_153239 NM_153273 NM_173588 NM_175736 NM_175864 NM_175898 NM_175901 NM_178145 NM_182894 NM_198291 NM_198686 NM_198835 NM_198900 NM_198935 NM_205857 NM_207362 XM_032996 XM_370838 XM_371074 XM_373786 XM_378456 XM_379391 XM_496889 XM_499312
For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets
" ,Nature Methods - 3, 199 - 204 (2006)