VIRsiRNAdb

Predicted off-targets seeds for siRNA "aacacggugggaguaccguau" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :746.
Total Genes with multiple seed matches: 33.
Genes with at least one seed match: NM_000046 NM_000077 NM_000091 NM_000103 NM_000115 NM_000159 NM_000237 NM_000296 NM_000302 NM_000385 NM_000411 NM_000452 NM_000531 NM_000546 NM_000547 NM_000599 NM_000602 NM_000611 NM_000617 NM_000758 NM_000851 NM_000872 NM_000899 NM_000903 NM_000914 NM_000961 NM_001001549 NM_001001550 NM_001001555 NM_001001664 NM_001001678 NM_001001681 NM_001001709 NM_001001890 NM_001001924 NM_001001925 NM_001001927 NM_001001931 NM_001001995 NM_001002009 NM_001002010 NM_001002919 NM_001003712 NM_001003725 NM_001004343 NM_001004356 NM_001004358 NM_001004426 NM_001005388 NM_001005404 NM_001005739 NM_001005849 NM_001006114 NM_001006624 NM_001006625 NM_001007098 NM_001007237 NM_001007466 NM_001008397 NM_001008411 NM_001008493 NM_001008539 NM_001008710 NM_001008711 NM_001008728 NM_001009909 NM_001009939 NM_001009944 NM_001009992 NM_001010911 NM_001010913 NM_001010925 NM_001010984 NM_001011658 NM_001011699 NM_001012264 NM_001012393 NM_001012651 NM_001012761 NM_001013675 NM_001015880 NM_001017405 NM_001017408 NM_001017523 NM_001017926 NM_001018060 NM_001018065 NM_001018066 NM_001018072 NM_001023560 NM_001024646 NM_001024847 NM_001025108 NM_001025266 NM_001092 NM_001116 NM_001155 NM_001156 NM_001174 NM_001177 NM_001234 NM_001241 NM_001292 NM_001298 NM_001300 NM_001310 NM_001356 NM_001386 NM_001387 NM_001390 NM_001394 NM_001412 NM_001419 NM_001423 NM_001513 NM_001542 NM_001642 NM_001724 NM_001754 NM_001759 NM_001845 NM_001858 NM_001896 NM_001936 NM_001964 NM_001999 NM_002047 NM_002074 NM_002124 NM_002187 NM_002207 NM_002229 NM_002267 NM_002285 NM_002299 NM_002429 NM_002430 NM_002478 NM_002531 NM_002545 NM_002562 NM_002595 NM_002596 NM_002617 NM_002657 NM_002688 NM_002709 NM_002710 NM_002716 NM_002825 NM_002948 NM_003034 NM_003046 NM_003083 NM_003113 NM_003150 NM_003211 NM_003216 NM_003242 NM_003247 NM_003260 NM_003387 NM_003401 NM_003436 NM_003560 NM_003605 NM_003681 NM_003690 NM_003740 NM_003799 NM_003856 NM_003888 NM_003895 NM_003898 NM_003924 NM_003930 NM_003949 NM_003994 NM_004033 NM_004034 NM_004093 NM_004116 NM_004128 NM_004258 NM_004273 NM_004342 NM_004414 NM_004426 NM_004494 NM_004554 NM_004571 NM_004623 NM_004657 NM_004660 NM_004670 NM_004673 NM_004730 NM_004734 NM_004800 NM_004863 NM_004926 NM_004952 NM_004974 NM_005082 NM_005105 NM_005116 NM_005127 NM_005177 NM_005311 NM_005432 NM_005434 NM_005472 NM_005475 NM_005539 NM_005584 NM_005631 NM_005647 NM_005658 NM_005766 NM_005779 NM_005828 NM_005845 NM_005882 NM_005914 NM_005931 NM_005957 NM_006011 NM_006020 NM_006037 NM_006162 NM_006210 NM_006291 NM_006359 NM_006465 NM_006474 NM_006499 NM_006632 NM_006646 NM_006734 NM_006753 NM_006763 NM_006805 NM_006829 NM_006867 NM_006905 NM_006919 NM_006937 NM_007007 NM_007008 NM_007035 NM_007048 NM_007067 NM_007107 NM_007151 NM_007174 NM_007222 NM_007285 NM_012080 NM_012137 NM_012259 NM_012282 NM_012334 NM_013236 NM_013257 NM_013276 NM_013290 NM_013372 NM_013390 NM_013397 NM_013423 NM_013427 NM_013435 NM_014157 NM_014325 NM_014351 NM_014415 NM_014469 NM_014494 NM_014563 NM_014598 NM_014634 NM_014642 NM_014647 NM_014667 NM_014707 NM_014751 NM_014802 NM_014819 NM_014838 NM_014844 NM_014869 NM_014873 NM_014879 NM_014919 NM_014990 NM_014997 NM_015022 NM_015035 NM_015056 NM_015071 NM_015085 NM_015090 NM_015100 NM_015111 NM_015155 NM_015199 NM_015225 NM_015251 NM_015254 NM_015292 NM_015345 NM_015359 NM_015381 NM_015392 NM_015476 NM_015530 NM_015559 NM_015652 NM_015691 NM_015719 NM_015832 NM_015855 NM_015885 NM_015980 NM_016061 NM_016083 NM_016206 NM_016221 NM_016250 NM_016422 NM_016467 NM_016489 NM_016516 NM_016538 NM_016556 NM_016599 NM_017553 NM_017581 NM_017599 NM_017634 NM_017656 NM_017671 NM_017769 NM_017784 NM_017802 NM_017810 NM_017864 NM_017920 NM_017924 NM_017967 NM_017985 NM_018047 NM_018071 NM_018086 NM_018153 NM_018168 NM_018211 NM_018212 NM_018339 NM_018362 NM_018440 NM_018472 NM_018556 NM_018652 NM_018676 NM_018708 NM_018999 NM_019001 NM_019044 NM_019055 NM_019069 NM_019081 NM_019109 NM_019117 NM_019613 NM_019859 NM_019860 NM_020141 NM_020143 NM_020165 NM_020184 NM_020200 NM_020245 NM_020310 NM_020354 NM_020399 NM_020409 NM_020438 NM_020532 NM_020533 NM_020657 NM_020698 NM_020749 NM_020807 NM_020828 NM_020841 NM_020856 NM_020863 NM_020909 NM_020939 NM_020947 NM_021090 NM_021151 NM_021217 NM_021648 NM_021809 NM_021923 NM_021961 NM_021962 NM_022081 NM_022114 NM_022336 NM_022406 NM_022436 NM_022463 NM_022469 NM_022483 NM_022550 NM_022746 NM_022791 NM_022792 NM_022909 NM_023079 NM_023934 NM_024007 NM_024057 NM_024593 NM_024595 NM_024638 NM_024683 NM_024709 NM_024749 NM_024780 NM_024809 NM_024831 NM_024845 NM_024924 NM_024963 NM_024986 NM_025138 NM_025154 NM_025195 NM_030568 NM_030817 NM_030891 NM_031226 NM_031305 NM_031362 NM_031363 NM_031364 NM_031365 NM_031366 NM_031469 NM_031476 NM_031889 NM_031953 NM_032012 NM_032196 NM_032214 NM_032227 NM_032262 NM_032354 NM_032357 NM_032529 NM_032545 NM_032573 NM_032772 NM_032800 NM_032801 NM_032900 NM_032975 NM_032980 NM_033017 NM_033090 NM_033091 NM_033133 NM_033138 NM_033139 NM_033140 NM_033157 NM_033181 NM_033318 NM_033337 NM_033389 NM_033417 NM_033515 NM_033641 NM_052828 NM_052831 NM_052847 NM_052879 NM_052928 NM_052965 NM_052995 NM_053000 NM_053286 NM_054033 NM_057158 NM_057177 NM_058195 NM_058197 NM_058241 NM_080551 NM_080816 NM_080862 NM_130463 NM_130783 NM_130797 NM_133332 NM_133333 NM_133334 NM_133510 NM_133646 NM_134470 NM_138282 NM_138287 NM_138384 NM_138468 NM_139276 NM_144649 NM_144669 NM_144679 NM_144704 NM_144718 NM_144778 NM_145170 NM_145203 NM_145205 NM_145259 NM_145864 NM_145865 NM_145870 NM_145871 NM_147149 NM_147152 NM_147197 NM_152237 NM_152262 NM_152322 NM_152360 NM_152442 NM_152446 NM_152475 NM_152531 NM_152544 NM_152554 NM_152641 NM_152682 NM_152736 NM_152840 NM_152841 NM_152842 NM_152843 NM_153029 NM_153050 NM_153051 NM_153239 NM_153355 NM_153362 NM_153615 NM_153701 NM_153812 NM_153818 NM_153828 NM_170696 NM_170697 NM_170709 NM_170719 NM_171999 NM_172208 NM_172387 NM_172388 NM_172389 NM_173074 NM_173459 NM_173484 NM_173492 NM_173536 NM_173639 NM_173794 NM_173804 NM_173805 NM_173828 NM_173849 NM_173854 NM_174878 NM_174934 NM_175077 NM_175719 NM_175721 NM_175722 NM_175725 NM_175728 NM_175878 NM_175907 NM_175913 NM_176874 NM_177427 NM_177442 NM_177977 NM_177988 NM_178140 NM_178191 NM_178509 NM_178514 NM_178815 NM_181356 NM_181836 NM_182533 NM_182584 NM_182615 NM_182746 NM_182752 NM_182767 NM_182966 NM_183065 NM_194301 NM_194310 NM_194318 NM_198098 NM_198157 NM_198389 NM_198402 NM_198403 NM_198480 NM_198484 NM_198507 NM_198515 NM_198542 NM_198557 NM_198576 NM_198887 NM_199044 NM_199054 NM_199072 NM_199186 NM_199188 NM_199190 NM_199263 NM_199334 NM_199454 NM_201535 NM_201536 NM_201537 NM_201538 NM_201539 NM_201540 NM_201541 NM_201543 NM_201544 NM_201545 NM_201565 NM_203327 NM_203329 NM_203330 NM_203331 NM_203417 NM_203418 NM_203446 NM_203463 NM_206876 NM_206877 NM_206883 NM_207171 NM_207304 NM_207390 NM_207400 NM_207429 NM_207432 NM_207437 NM_207438 NM_207484 NM_207488 NM_207520 NM_207521 NM_212502 NM_212503 NM_213662 XM_039676 XM_043653 XM_048898 XM_059909 XM_086001 XM_166132 XM_166320 XM_211871 XM_370991 XM_371139 XM_371181 XM_371590 XM_371591 XM_371664 XM_373030 XM_373539 XM_373950 XM_374902 XM_374915 XM_375041 XM_375185 XM_375373 XM_375527 XM_375608 XM_375646 XM_375816 XM_376386 XM_376436 XM_376586 XM_376679 XM_376727 XM_378279 XM_378379 XM_378517 XM_378701 XM_378860 XM_379075 XM_379102 XM_379437 XM_379535 XM_379584 XM_379629 XM_379664 XM_379665 XM_379671 XM_379722 XM_379798 XM_379933 XM_379979 XM_380160 XM_495849 XM_496115 XM_496608 XM_497144 XM_498434 XM_498436 XM_498545 XM_498850 XM_498901 XM_499072 XM_499153 XM_499154 XM_499496 XM_499525 XM_499563 XM_499566 XR_000217 XR_000275	Genes with multiple seed matches: NM_000903 NM_001005388 NM_001008493 NM_001009909 NM_001017405 NM_001174 NM_003113 NM_003681 NM_005647 NM_005882 NM_006011 NM_013423 NM_013427 NM_015090 NM_015111 NM_015225 NM_018212 NM_018708 NM_022114 NM_022469 NM_024831 NM_052965 NM_152544 NM_152554 NM_173459 NM_173804 NM_198402 NM_199454 NM_201565 XM_375816 XM_376679 XM_379933 XR_000217

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA