VIRsiRNAdb

Predicted off-targets seeds for siRNA "ggcugaucaacaccaacggca" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :817.
Total Genes with multiple seed matches: 38.
Genes with at least one seed match: NM_000068 NM_000091 NM_000114 NM_000131 NM_000237 NM_000305 NM_000438 NM_000478 NM_000525 NM_000610 NM_000611 NM_000766 NM_000849 NM_000997 NM_001001331 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001001396 NM_001001685 NM_001001788 NM_001001789 NM_001001938 NM_001002836 NM_001002926 NM_001003684 NM_001003799 NM_001004197 NM_001004297 NM_001004430 NM_001005356 NM_001005357 NM_001005387 NM_001005611 NM_001007156 NM_001007237 NM_001007262 NM_001007543 NM_001008234 NM_001008410 NM_001008539 NM_001008701 NM_001008709 NM_001009553 NM_001009820 NM_001009880 NM_001009923 NM_001009924 NM_001009925 NM_001009992 NM_001010000 NM_001010864 NM_001010924 NM_001011514 NM_001012267 NM_001012714 NM_001012958 NM_001013253 NM_001013254 NM_001013255 NM_001013438 NM_001013633 NM_001013635 NM_001013642 NM_001013670 NM_001013675 NM_001013683 NM_001013685 NM_001013720 NM_001013721 NM_001014283 NM_001014436 NM_001014449 NM_001014451 NM_001015047 NM_001015051 NM_001017396 NM_001017408 NM_001017421 NM_001017524 NM_001017915 NM_001017924 NM_001018009 NM_001018050 NM_001018051 NM_001018052 NM_001018161 NM_001023565 NM_001024218 NM_001024630 NM_001024680 NM_001024808 NM_001025105 NM_001044 NM_001150 NM_001269 NM_001270 NM_001283 NM_001346 NM_001394 NM_001425 NM_001542 NM_001605 NM_001630 NM_001674 NM_001683 NM_001684 NM_001768 NM_001773 NM_001892 NM_001941 NM_001954 NM_001991 NM_002006 NM_002009 NM_002012 NM_002052 NM_002062 NM_002067 NM_002068 NM_002078 NM_002083 NM_002109 NM_002133 NM_002160 NM_002204 NM_002264 NM_002339 NM_002357 NM_002373 NM_002460 NM_002481 NM_002486 NM_002556 NM_002605 NM_002705 NM_002708 NM_002737 NM_002738 NM_002760 NM_002775 NM_002870 NM_002904 NM_002938 NM_002998 NM_003010 NM_003046 NM_003108 NM_003137 NM_003199 NM_003234 NM_003260 NM_003275 NM_003319 NM_003338 NM_003382 NM_003388 NM_003392 NM_003449 NM_003478 NM_003481 NM_003507 NM_003511 NM_003539 NM_003607 NM_003633 NM_003657 NM_003670 NM_003684 NM_003924 NM_003951 NM_003983 NM_004024 NM_004050 NM_004091 NM_004093 NM_004102 NM_004109 NM_004133 NM_004157 NM_004200 NM_004220 NM_004238 NM_004302 NM_004311 NM_004348 NM_004350 NM_004386 NM_004518 NM_004536 NM_004571 NM_004573 NM_004602 NM_004612 NM_004660 NM_004709 NM_004723 NM_004742 NM_004747 NM_004750 NM_004753 NM_004796 NM_004844 NM_004854 NM_004869 NM_004883 NM_004937 NM_004968 NM_004992 NM_004996 NM_005098 NM_005110 NM_005116 NM_005146 NM_005157 NM_005188 NM_005239 NM_005253 NM_005320 NM_005325 NM_005501 NM_005541 NM_005608 NM_005653 NM_005674 NM_005870 NM_005920 NM_005933 NM_005935 NM_006017 NM_006018 NM_006026 NM_006060 NM_006094 NM_006107 NM_006116 NM_006131 NM_006132 NM_006162 NM_006203 NM_006242 NM_006257 NM_006265 NM_006272 NM_006283 NM_006312 NM_006336 NM_006420 NM_006516 NM_006547 NM_006559 NM_006565 NM_006698 NM_006818 NM_006852 NM_006888 NM_007011 NM_007071 NM_007221 NM_007241 NM_007242 NM_007249 NM_007313 NM_007353 NM_007375 NM_009586 NM_012102 NM_012115 NM_012173 NM_012234 NM_012239 NM_012250 NM_012275 NM_012308 NM_012318 NM_012321 NM_012399 NM_012402 NM_012409 NM_012425 NM_012458 NM_013275 NM_013372 NM_013387 NM_013403 NM_013438 NM_013942 NM_013981 NM_013982 NM_013983 NM_013993 NM_013994 NM_014063 NM_014080 NM_014145 NM_014187 NM_014216 NM_014231 NM_014286 NM_014368 NM_014405 NM_014504 NM_014586 NM_014587 NM_014590 NM_014634 NM_014660 NM_014661 NM_014700 NM_014732 NM_014826 NM_014867 NM_014907 NM_014921 NM_014934 NM_014947 NM_014953 NM_014996 NM_015015 NM_015039 NM_015045 NM_015074 NM_015198 NM_015229 NM_015253 NM_015264 NM_015267 NM_015308 NM_015321 NM_015347 NM_015355 NM_015488 NM_015695 NM_015715 NM_015836 NM_015927 NM_015928 NM_015937 NM_015981 NM_015995 NM_016034 NM_016048 NM_016083 NM_016084 NM_016206 NM_016210 NM_016215 NM_016224 NM_016302 NM_016396 NM_016424 NM_016497 NM_016561 NM_016564 NM_016577 NM_016579 NM_016588 NM_016604 NM_016735 NM_016830 NM_017433 NM_017452 NM_017453 NM_017454 NM_017542 NM_017551 NM_017572 NM_017583 NM_017622 NM_017628 NM_017629 NM_017817 NM_017888 NM_017936 NM_017974 NM_017999 NM_018053 NM_018059 NM_018111 NM_018185 NM_018192 NM_018198 NM_018234 NM_018322 NM_018332 NM_018409 NM_018556 NM_018579 NM_018584 NM_018646 NM_018970 NM_018988 NM_019011 NM_019085 NM_019594 NM_019616 NM_019862 NM_019898 NM_019899 NM_019900 NM_019901 NM_019902 NM_020038 NM_020062 NM_020326 NM_020371 NM_020398 NM_020399 NM_020683 NM_020699 NM_020773 NM_020796 NM_020806 NM_020809 NM_020825 NM_020839 NM_020959 NM_020972 NM_020993 NM_021012 NM_021058 NM_021064 NM_021088 NM_021197 NM_021248 NM_021570 NM_021628 NM_021638 NM_021785 NM_021806 NM_021813 NM_021823 NM_021965 NM_022093 NM_022119 NM_022150 NM_022162 NM_022304 NM_022307 NM_022308 NM_022351 NM_022459 NM_022465 NM_022494 NM_022496 NM_022570 NM_022572 NM_022810 NM_022818 NM_022898 NM_023028 NM_023078 NM_023109 NM_023947 NM_024017 NM_024342 NM_024423 NM_024665 NM_024667 NM_024677 NM_024761 NM_024773 NM_024827 NM_024915 NM_025010 NM_025041 NM_025069 NM_025079 NM_025194 NM_030594 NM_030622 NM_030665 NM_030775 NM_030803 NM_030806 NM_030964 NM_031208 NM_031310 NM_031362 NM_031363 NM_031364 NM_031365 NM_031366 NM_031476 NM_031490 NM_031950 NM_032012 NM_032028 NM_032105 NM_032222 NM_032246 NM_032317 NM_032329 NM_032421 NM_032423 NM_032445 NM_032449 NM_032451 NM_032508 NM_032560 NM_032573 NM_032642 NM_032710 NM_032735 NM_032800 NM_032810 NM_032848 NM_033102 NM_033181 NM_033224 NM_033274 NM_033291 NM_033332 NM_033400 NM_033405 NM_033446 NM_052896 NM_052898 NM_053056 NM_053067 NM_054026 NM_057158 NM_080546 NM_080600 NM_080659 NM_080816 NM_080836 NM_130459 NM_130466 NM_130792 NM_130806 NM_133334 NM_133378 NM_133432 NM_133437 NM_138298 NM_138300 NM_138338 NM_138368 NM_138413 NM_138468 NM_138473 NM_138576 NM_138795 NM_138970 NM_139016 NM_139214 NM_144566 NM_144583 NM_144595 NM_144673 NM_145016 NM_145057 NM_145065 NM_145238 NM_145323 NM_145324 NM_145719 NM_145735 NM_145753 NM_147129 NM_152235 NM_152308 NM_152340 NM_152353 NM_152367 NM_152488 NM_152496 NM_152507 NM_152568 NM_152675 NM_152724 NM_152728 NM_152744 NM_152760 NM_152789 NM_152842 NM_152924 NM_152945 NM_152994 NM_153031 NM_153229 NM_153238 NM_153344 NM_153701 NM_153712 NM_156036 NM_170706 NM_171825 NM_171827 NM_172375 NM_172387 NM_172388 NM_172389 NM_173170 NM_173354 NM_173454 NM_173455 NM_173456 NM_173457 NM_173462 NM_173509 NM_173582 NM_173654 NM_173728 NM_173795 NM_173831 NM_174869 NM_174917 NM_174918 NM_175056 NM_175078 NM_175901 NM_177423 NM_177551 NM_178145 NM_178500 NM_178569 NM_178835 NM_178839 NM_181502 NM_181504 NM_181523 NM_181524 NM_181789 NM_182481 NM_182484 NM_182509 NM_182533 NM_182534 NM_182568 NM_182587 NM_182615 NM_182616 NM_182643 NM_182775 NM_182915 NM_183414 NM_183415 NM_183420 NM_183421 NM_194278 NM_194294 NM_194310 NM_197947 NM_197948 NM_197949 NM_197950 NM_197951 NM_197952 NM_197953 NM_198141 NM_198278 NM_198284 NM_198582 NM_198587 NM_198595 NM_198686 NM_198851 NM_198890 NM_198968 NM_199003 NM_199054 NM_199069 NM_199070 NM_199071 NM_199073 NM_199074 NM_199160 NM_199163 NM_199245 NM_199334 NM_199417 NM_199461 NM_201263 NM_201446 NM_201556 NM_201557 NM_201565 NM_203327 NM_203329 NM_203330 NM_203331 NM_203353 NM_203445 NM_203453 NM_206873 NM_206893 NM_207032 NM_207033 NM_207034 NM_207111 NM_207116 NM_207367 NM_207368 NM_207375 NM_207389 NM_207394 NM_207400 NM_207411 NM_207428 NM_207436 NM_207509 NM_207513 NM_207644 NM_213609 XM_035601 XM_038436 XM_039877 XM_048898 XM_059482 XM_059929 XM_117213 XM_166132 XM_209655 XM_210048 XM_211287 XM_290342 XM_290546 XM_290597 XM_293903 XM_295213 XM_370899 XM_370928 XM_371106 XM_371214 XM_372193 XM_373666 XM_373765 XM_373831 XM_374152 XM_374296 XM_374414 XM_375430 XM_375697 XM_376018 XM_376148 XM_376281 XM_376558 XM_376587 XM_376610 XM_376774 XM_377073 XM_378178 XM_378207 XM_378247 XM_378250 XM_378368 XM_378379 XM_378394 XM_378589 XM_378608 XM_378623 XM_378661 XM_378758 XM_378798 XM_378971 XM_378982 XM_379044 XM_379184 XM_379273 XM_379276 XM_379320 XM_379378 XM_379380 XM_379391 XM_379398 XM_379432 XM_379459 XM_379535 XM_379547 XM_379622 XM_379629 XM_379639 XM_379831 XM_379920 XM_380160 XM_495886 XM_495918 XM_496238 XM_496449 XM_496502 XM_496836 XM_496870 XM_496877 XM_496907 XM_496985 XM_497056 XM_497080 XM_498454 XM_498488 XM_498557 XM_498567 XM_498624 XM_498647 XM_498649 XM_498716 XM_498738 XM_498835 XM_498883 XM_499008 XM_499020 XM_499047 XM_499056 XM_499068 XM_499093 XM_499100 XM_499140 XM_499147 XM_499286 XM_499343 XM_499503 XM_499519 XM_499583 XR_000182 XR_000227	Genes with multiple seed matches: NM_001013685 NM_001013721 NM_001018009 NM_004200 NM_004844 NM_005116 NM_006162 NM_006516 NM_012308 NM_013403 NM_014587 NM_015229 NM_016588 NM_018970 NM_024915 NM_032445 NM_032508 NM_032848 NM_033446 NM_172387 NM_172388 NM_172389 NM_173728 NM_182534 NM_194278 NM_199054 NM_203327 XM_295213 XM_376018 XM_378798 XM_379920 XM_496449 XM_496836 XM_496877 XM_498835 XM_499047 XM_499068 XM_499519

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA