VIRsiRNAdb

Predicted off-targets seeds for siRNA "caaagaccaagucgaccaa" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :823.
Total Genes with multiple seed matches: 43.
Genes with at least one seed match: NM_000017 NM_000029 NM_000155 NM_000185 NM_000246 NM_000266 NM_000269 NM_000297 NM_000310 NM_000345 NM_000383 NM_000391 NM_000420 NM_000445 NM_000455 NM_000577 NM_000591 NM_000595 NM_000598 NM_000603 NM_000633 NM_000664 NM_000698 NM_000702 NM_000721 NM_000747 NM_000827 NM_000841 NM_000843 NM_000924 NM_000961 NM_000964 NM_001001349 NM_001001414 NM_001001417 NM_001001418 NM_001001482 NM_001001549 NM_001001550 NM_001001555 NM_001001679 NM_001001693 NM_001001698 NM_001001791 NM_001001938 NM_001002758 NM_001002762 NM_001002799 NM_001002836 NM_001002862 NM_001003399 NM_001003715 NM_001003716 NM_001003786 NM_001003787 NM_001003788 NM_001004019 NM_001004106 NM_001004355 NM_001004416 NM_001005410 NM_001005411 NM_001005473 NM_001005737 NM_001005766 NM_001005782 NM_001005862 NM_001005914 NM_001006113 NM_001006603 NM_001007071 NM_001008404 NM_001008535 NM_001008563 NM_001008710 NM_001008711 NM_001009905 NM_001010882 NM_001010911 NM_001010925 NM_001010926 NM_001011656 NM_001012393 NM_001012713 NM_001012960 NM_001013398 NM_001013464 NM_001013649 NM_001013651 NM_001013677 NM_001013687 NM_001013695 NM_001013707 NM_001013712 NM_001013721 NM_001014797 NM_001017405 NM_001018004 NM_001018006 NM_001018007 NM_001018020 NM_001018070 NM_001018112 NM_001018116 NM_001023565 NM_001023582 NM_001024631 NM_001024654 NM_001024809 NM_001024858 NM_001025202 NM_001031 NM_001110 NM_001119 NM_001242 NM_001270 NM_001294 NM_001329 NM_001358 NM_001420 NM_001428 NM_001481 NM_001505 NM_001534 NM_001617 NM_001711 NM_001806 NM_001899 NM_001974 NM_001998 NM_002009 NM_002071 NM_002082 NM_002131 NM_002200 NM_002204 NM_002230 NM_002359 NM_002375 NM_002468 NM_002473 NM_002479 NM_002484 NM_002501 NM_002545 NM_002560 NM_002570 NM_002753 NM_002768 NM_002819 NM_002840 NM_002938 NM_002956 NM_002972 NM_003010 NM_003038 NM_003042 NM_003099 NM_003155 NM_003168 NM_003170 NM_003217 NM_003251 NM_003281 NM_003343 NM_003352 NM_003382 NM_003395 NM_003400 NM_003403 NM_003486 NM_003548 NM_003590 NM_003603 NM_003605 NM_003644 NM_003655 NM_003749 NM_003787 NM_003869 NM_003870 NM_003872 NM_003885 NM_003889 NM_003901 NM_003979 NM_004186 NM_004188 NM_004200 NM_004227 NM_004321 NM_004342 NM_004368 NM_004393 NM_004448 NM_004455 NM_004480 NM_004499 NM_004506 NM_004564 NM_004636 NM_004660 NM_004676 NM_004699 NM_004723 NM_004736 NM_004742 NM_004778 NM_004782 NM_004823 NM_004834 NM_004854 NM_004924 NM_004937 NM_004992 NM_005000 NM_005076 NM_005098 NM_005116 NM_005186 NM_005187 NM_005188 NM_005197 NM_005202 NM_005221 NM_005311 NM_005370 NM_005376 NM_005479 NM_005501 NM_005619 NM_005663 NM_005682 NM_005697 NM_005741 NM_005801 NM_005806 NM_005811 NM_005881 NM_005882 NM_005986 NM_005993 NM_006005 NM_006029 NM_006091 NM_006133 NM_006137 NM_006202 NM_006208 NM_006224 NM_006275 NM_006276 NM_006283 NM_006504 NM_006553 NM_006625 NM_006651 NM_006676 NM_006685 NM_006732 NM_006741 NM_006766 NM_006814 NM_006823 NM_006867 NM_006927 NM_006936 NM_007028 NM_007043 NM_007121 NM_007174 NM_007331 NM_007374 NM_012083 NM_012090 NM_012225 NM_012232 NM_012296 NM_012346 NM_012445 NM_012455 NM_013254 NM_013937 NM_014007 NM_014023 NM_014189 NM_014190 NM_014207 NM_014239 NM_014289 NM_014319 NM_014333 NM_014344 NM_014357 NM_014368 NM_014388 NM_014392 NM_014435 NM_014488 NM_014614 NM_014636 NM_014661 NM_014665 NM_014674 NM_014697 NM_014725 NM_014729 NM_014730 NM_014731 NM_014757 NM_014760 NM_014770 NM_014772 NM_014788 NM_014801 NM_014850 NM_014988 NM_015005 NM_015027 NM_015071 NM_015082 NM_015085 NM_015111 NM_015124 NM_015129 NM_015133 NM_015170 NM_015226 NM_015227 NM_015260 NM_015315 NM_015316 NM_015441 NM_015462 NM_015526 NM_015584 NM_015831 NM_015833 NM_015834 NM_015891 NM_015896 NM_015913 NM_015962 NM_016170 NM_016219 NM_016231 NM_016331 NM_016376 NM_016426 NM_016437 NM_016463 NM_016553 NM_016605 NM_016606 NM_016611 NM_016946 NM_017415 NM_017426 NM_017483 NM_017485 NM_017486 NM_017488 NM_017550 NM_017551 NM_017583 NM_017595 NM_017617 NM_017626 NM_017628 NM_017656 NM_017723 NM_017793 NM_017873 NM_017884 NM_017951 NM_017957 NM_018023 NM_018059 NM_018071 NM_018097 NM_018133 NM_018170 NM_018209 NM_018284 NM_018286 NM_018360 NM_018431 NM_018607 NM_018644 NM_018697 NM_018977 NM_018992 NM_019009 NM_019027 NM_019106 NM_020132 NM_020182 NM_020201 NM_020213 NM_020214 NM_020340 NM_020354 NM_020360 NM_020394 NM_020405 NM_020418 NM_020441 NM_020663 NM_020698 NM_020782 NM_020796 NM_020810 NM_020851 NM_020882 NM_020894 NM_020933 NM_020946 NM_020972 NM_021069 NM_021079 NM_021116 NM_021156 NM_021192 NM_021198 NM_021255 NM_021629 NM_021905 NM_021950 NM_021961 NM_021977 NM_021991 NM_022002 NM_022066 NM_022085 NM_022123 NM_022161 NM_022450 NM_022737 NM_022766 NM_022776 NM_022802 NM_022895 NM_022915 NM_023078 NM_023914 NM_023927 NM_023938 NM_024005 NM_024015 NM_024098 NM_024308 NM_024600 NM_024630 NM_024645 NM_024709 NM_024723 NM_024730 NM_024817 NM_024885 NM_024913 NM_024922 NM_024935 NM_024938 NM_025004 NM_025061 NM_025078 NM_025084 NM_025090 NM_030594 NM_030655 NM_030810 NM_030884 NM_030911 NM_030919 NM_031265 NM_031266 NM_031282 NM_031445 NM_031484 NM_031896 NM_031912 NM_031954 NM_031990 NM_031991 NM_032037 NM_032144 NM_032258 NM_032281 NM_032289 NM_032336 NM_032371 NM_032420 NM_032476 NM_032529 NM_032561 NM_032565 NM_032643 NM_032646 NM_032710 NM_032711 NM_032738 NM_032950 NM_032961 NM_033008 NM_033009 NM_033010 NM_033013 NM_033044 NM_033118 NM_033138 NM_033139 NM_033140 NM_033157 NM_033199 NM_033200 NM_033332 NM_033392 NM_033409 NM_033512 NM_033515 NM_033543 NM_033551 NM_052813 NM_052816 NM_052854 NM_052869 NM_052899 NM_052900 NM_052909 NM_052947 NM_052948 NM_052949 NM_054025 NM_058182 NM_078625 NM_080491 NM_080660 NM_080664 NM_080836 NM_130435 NM_130440 NM_130773 NM_130786 NM_130830 NM_133328 NM_133369 NM_133443 NM_133445 NM_133455 NM_133509 NM_133634 NM_133635 NM_134434 NM_138288 NM_138319 NM_138415 NM_138418 NM_138640 NM_138784 NM_138795 NM_138934 NM_138981 NM_139275 NM_139278 NM_139317 NM_144501 NM_144502 NM_144503 NM_144504 NM_144613 NM_144682 NM_144964 NM_144966 NM_145045 NM_145165 NM_145282 NM_145686 NM_145687 NM_145799 NM_145899 NM_145901 NM_145902 NM_145903 NM_145904 NM_145905 NM_148171 NM_148955 NM_152235 NM_152253 NM_152280 NM_152342 NM_152409 NM_152414 NM_152425 NM_152458 NM_152468 NM_152470 NM_152557 NM_152598 NM_152751 NM_152793 NM_152826 NM_152864 NM_152866 NM_153010 NM_153239 NM_153262 NM_153334 NM_153335 NM_153345 NM_153347 NM_153456 NM_153646 NM_153647 NM_153648 NM_153683 NM_153718 NM_153719 NM_153746 NM_172056 NM_172364 NM_173568 NM_173580 NM_173629 NM_173631 NM_173680 NM_173833 NM_173841 NM_173842 NM_173843 NM_174892 NM_174911 NM_174921 NM_175567 NM_175568 NM_175609 NM_175734 NM_175847 NM_175900 NM_175902 NM_175931 NM_176801 NM_176894 NM_177959 NM_177978 NM_177979 NM_177999 NM_178034 NM_178120 NM_178154 NM_178155 NM_178156 NM_178157 NM_178502 NM_178550 NM_178578 NM_178579 NM_178835 NM_181041 NM_181355 NM_181359 NM_181491 NM_181644 NM_181672 NM_181673 NM_181839 NM_182518 NM_182688 NM_182740 NM_182895 NM_182924 NM_182978 NM_194288 NM_194290 NM_197939 NM_197964 NM_198061 NM_198123 NM_198124 NM_198175 NM_198207 NM_198240 NM_198278 NM_198392 NM_198440 NM_198499 NM_198563 NM_198686 NM_198835 NM_199050 NM_199141 NM_199160 NM_199169 NM_199170 NM_199171 NM_201266 NM_201277 NM_201279 NM_201378 NM_201379 NM_201380 NM_201381 NM_201382 NM_201383 NM_201384 NM_201432 NM_201433 NM_201524 NM_201525 NM_203327 NM_203426 NM_203445 NM_203481 NM_203510 NM_206835 NM_206854 NM_206855 NM_206893 NM_206900 NM_206901 NM_206902 NM_207306 NM_207324 NM_207329 NM_207358 NM_207362 NM_207367 NM_207386 NM_207400 NM_207438 NM_207449 NM_207465 NM_207474 NM_207477 NM_207504 NM_207577 NM_207646 XM_028217 XM_034274 XM_039733 XM_046581 XM_047610 XM_048592 XM_050278 XM_059256 XM_059689 XM_067585 XM_084529 XM_114000 XM_166320 XM_170659 XM_209554 XM_290540 XM_290546 XM_291105 XM_295195 XM_371074 XM_371181 XM_371486 XM_371590 XM_371783 XM_372128 XM_372194 XM_372261 XM_372716 XM_373547 XM_373894 XM_373906 XM_374766 XM_374781 XM_374880 XM_374902 XM_374915 XM_375090 XM_375174 XM_375275 XM_375359 XM_375373 XM_375424 XM_375816 XM_376386 XM_376558 XM_377002 XM_378550 XM_378625 XM_378678 XM_378756 XM_378758 XM_378777 XM_378843 XM_378883 XM_378908 XM_378982 XM_378983 XM_379230 XM_379234 XM_379381 XM_379402 XM_379459 XM_495796 XM_496134 XM_496145 XM_496158 XM_496335 XM_496519 XM_496836 XM_497010 XM_497185 XM_498555 XM_498882 XM_498886 XM_498989 XM_499093 XM_499100 XM_499110 XM_499164 XM_499170 XM_499262 XM_499501 XR_000184 XR_000254 XR_000266 XR_000294	Genes with multiple seed matches: NM_001001418 NM_001005737 NM_001008563 NM_001024654 NM_002501 NM_003038 NM_003281 NM_003343 NM_004227 NM_004321 NM_004480 NM_005479 NM_006676 NM_007028 NM_007174 NM_012232 NM_014661 NM_014850 NM_017551 NM_021629 NM_021961 NM_031912 NM_033409 NM_052816 NM_052854 NM_134434 NM_152235 NM_152793 NM_173833 NM_175567 NM_178154 NM_178155 NM_178156 NM_178157 NM_182688 NM_206902 NM_207306 NM_207477 NM_207577 XM_290540 XM_371074 XM_372716 XM_499501

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA