VIRsiRNAdb

Predicted off-targets seeds for siRNA "gucgaguucauucgguaug" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :617.
Total Genes with multiple seed matches: 20.
Genes with at least one seed match: NM_000161 NM_000204 NM_000291 NM_000311 NM_000332 NM_000369 NM_000445 NM_000451 NM_000503 NM_000548 NM_000555 NM_000664 NM_000744 NM_000792 NM_000793 NM_000831 NM_000849 NM_000861 NM_000870 NM_001001484 NM_001001696 NM_001001704 NM_001001787 NM_001001890 NM_001002799 NM_001002800 NM_001002814 NM_001004051 NM_001005210 NM_001005217 NM_001005386 NM_001006946 NM_001007023 NM_001007097 NM_001007240 NM_001007241 NM_001007242 NM_001007254 NM_001008537 NM_001009880 NM_001010908 NM_001011666 NM_001011708 NM_001012329 NM_001012398 NM_001012420 NM_001012423 NM_001012756 NM_001013659 NM_001013675 NM_001013695 NM_001013701 NM_001013746 NM_001015048 NM_001015049 NM_001017430 NM_001017431 NM_001017972 NM_001018097 NM_001024666 NM_001024843 NM_001025076 NM_001025077 NM_001049 NM_001198 NM_001257 NM_001259 NM_001277 NM_001286 NM_001291 NM_001292 NM_001412 NM_001424 NM_001455 NM_001461 NM_001502 NM_001547 NM_001677 NM_001695 NM_001754 NM_001830 NM_002077 NM_002126 NM_002130 NM_002149 NM_002177 NM_002247 NM_002265 NM_002267 NM_002353 NM_002376 NM_002449 NM_002493 NM_002519 NM_002546 NM_002641 NM_002657 NM_002713 NM_002836 NM_002868 NM_002869 NM_002873 NM_002997 NM_003010 NM_003023 NM_003070 NM_003179 NM_003330 NM_003343 NM_003367 NM_003439 NM_003503 NM_003622 NM_003644 NM_003740 NM_003759 NM_003790 NM_003799 NM_003811 NM_003883 NM_003899 NM_003920 NM_003939 NM_004136 NM_004177 NM_004210 NM_004237 NM_004274 NM_004319 NM_004350 NM_004356 NM_004409 NM_004464 NM_004481 NM_004504 NM_004560 NM_004579 NM_004582 NM_004702 NM_004711 NM_004720 NM_004775 NM_004802 NM_004804 NM_004842 NM_004873 NM_004904 NM_004922 NM_004975 NM_005065 NM_005068 NM_005088 NM_005146 NM_005159 NM_005169 NM_005235 NM_005349 NM_005461 NM_005496 NM_005722 NM_005749 NM_005802 NM_005806 NM_005866 NM_005885 NM_005930 NM_005933 NM_006096 NM_006114 NM_006138 NM_006141 NM_006242 NM_006291 NM_006310 NM_006348 NM_006460 NM_006464 NM_006561 NM_006614 NM_006743 NM_006943 NM_006951 NM_006980 NM_007118 NM_007212 NM_007257 NM_007285 NM_012119 NM_012189 NM_012192 NM_012193 NM_012247 NM_012306 NM_012316 NM_012319 NM_012325 NM_012384 NM_012388 NM_012448 NM_013341 NM_013357 NM_013388 NM_013937 NM_013989 NM_014016 NM_014110 NM_014223 NM_014240 NM_014285 NM_014321 NM_014570 NM_014591 NM_014653 NM_014656 NM_014772 NM_014867 NM_014923 NM_014945 NM_014948 NM_014997 NM_015025 NM_015079 NM_015088 NM_015111 NM_015202 NM_015247 NM_015264 NM_015265 NM_015299 NM_015353 NM_015355 NM_015438 NM_015458 NM_015608 NM_015874 NM_016162 NM_016220 NM_016377 NM_016404 NM_016480 NM_016588 NM_016591 NM_016603 NM_016626 NM_016936 NM_017672 NM_017680 NM_017738 NM_017902 NM_017952 NM_017994 NM_018098 NM_018112 NM_018238 NM_018293 NM_018385 NM_018401 NM_018449 NM_018450 NM_018478 NM_018602 NM_018936 NM_018959 NM_019001 NM_019094 NM_019099 NM_019117 NM_019855 NM_020144 NM_020151 NM_020200 NM_020248 NM_020384 NM_020431 NM_020432 NM_020443 NM_020462 NM_020472 NM_020473 NM_020689 NM_020724 NM_020820 NM_020826 NM_020844 NM_020867 NM_020933 NM_020957 NM_021045 NM_021055 NM_021056 NM_021111 NM_021570 NM_021645 NM_021735 NM_021736 NM_021737 NM_021808 NM_021813 NM_021818 NM_021935 NM_021961 NM_022117 NM_022133 NM_022333 NM_022460 NM_022476 NM_022662 NM_023004 NM_024408 NM_024617 NM_024657 NM_024719 NM_024785 NM_025010 NM_025023 NM_025059 NM_025146 NM_025194 NM_030650 NM_030661 NM_030664 NM_030918 NM_031265 NM_031490 NM_031892 NM_032276 NM_032287 NM_032329 NM_032446 NM_032782 NM_032800 NM_032859 NM_032866 NM_033025 NM_033083 NM_033088 NM_033143 NM_033254 NM_033323 NM_033332 NM_033429 NM_033446 NM_033513 NM_033637 NM_052911 NM_052913 NM_052916 NM_052970 NM_057177 NM_057735 NM_057749 NM_058246 NM_080546 NM_080730 NM_080731 NM_080836 NM_080840 NM_080841 NM_080867 NM_133338 NM_133339 NM_133340 NM_133341 NM_133342 NM_133343 NM_133344 NM_133462 NM_134421 NM_138437 NM_138558 NM_138633 NM_138782 NM_139045 NM_139267 NM_144563 NM_144599 NM_144682 NM_144726 NM_144778 NM_145013 NM_145037 NM_145117 NM_145174 NM_145203 NM_145259 NM_145280 NM_145293 NM_145305 NM_145809 NM_145913 NM_147157 NM_147158 NM_147159 NM_147160 NM_148171 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148971 NM_148972 NM_148973 NM_148974 NM_152253 NM_152280 NM_152284 NM_152374 NM_152391 NM_152393 NM_152395 NM_152399 NM_152581 NM_152836 NM_152837 NM_153032 NM_153261 NM_153631 NM_153632 NM_153768 NM_170711 NM_170743 NM_171999 NM_172058 NM_172059 NM_172060 NM_172069 NM_172366 NM_173064 NM_173065 NM_173191 NM_173192 NM_173193 NM_173194 NM_173195 NM_173342 NM_173463 NM_173491 NM_173511 NM_173578 NM_173808 NM_174878 NM_174901 NM_174934 NM_174945 NM_174951 NM_175908 NM_175921 NM_178011 NM_178012 NM_178122 NM_178151 NM_178152 NM_178153 NM_178181 NM_178432 NM_178815 NM_178842 NM_181041 NM_181504 NM_181523 NM_181524 NM_181733 NM_182525 NM_182531 NM_182620 NM_182688 NM_182729 NM_182739 NM_182742 NM_182743 NM_182760 NM_182898 NM_182899 NM_182907 NM_182964 NM_183079 NM_194248 NM_194278 NM_194322 NM_194323 NM_197941 NM_198243 NM_198281 NM_198287 NM_198404 NM_198485 NM_198549 NM_198597 NM_198835 NM_198844 NM_198896 NM_198926 NM_198935 NM_199040 NM_199050 NM_199129 NM_199168 NM_199282 NM_199321 NM_199415 NM_199421 NM_201378 NM_201379 NM_201380 NM_201381 NM_201382 NM_201383 NM_201384 NM_201432 NM_201433 NM_201559 NM_201628 NM_201994 NM_203283 NM_203284 NM_203354 NM_203355 NM_203356 NM_203357 NM_203390 NM_205849 NM_205854 NM_207291 NM_207304 NM_207329 NM_207333 NM_207359 NM_207372 NM_207432 NM_207434 NM_207451 NM_207468 NM_207645 NM_212469 NM_213593 XM_031553 XM_032945 XM_035299 XM_037557 XM_038436 XM_048362 XM_048592 XM_051862 XM_058513 XM_209554 XM_290527 XM_290615 XM_290629 XM_350880 XM_351948 XM_370654 XM_370837 XM_370839 XM_370843 XM_370917 XM_371514 XM_371588 XM_372090 XM_372267 XM_373686 XM_373883 XM_374086 XM_374141 XM_374765 XM_374803 XM_374902 XM_375152 XM_375443 XM_375491 XM_375608 XM_375697 XM_375853 XM_376334 XM_376423 XM_376784 XM_376986 XM_378202 XM_378272 XM_378350 XM_378454 XM_378545 XM_378617 XM_378858 XM_378946 XM_379029 XM_379060 XM_379135 XM_379136 XM_379215 XM_379274 XM_379309 XM_379456 XM_379582 XM_495803 XM_496434 XM_496539 XM_496889 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497080 XM_498464 XM_498557 XM_498683 XM_498739 XM_498910 XM_498912 XM_498986 XM_499051 XM_499182 XM_499312 XM_499594 XR_000216	Genes with multiple seed matches: NM_001006946 NM_002997 NM_003759 NM_014240 NM_014772 NM_015458 NM_017952 NM_020200 NM_022117 NM_022133 NM_030650 NM_030661 NM_052913 NM_152836 NM_152837 NM_153631 NM_153632 XM_370839 XM_374765 XM_497080

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA