VIRsiRNAdb

Predicted off-targets seeds for siRNA "ugcccguuuucaaaccggg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :822.
Total Genes with multiple seed matches: 44.
Genes with at least one seed match: NM_000076 NM_000142 NM_000219 NM_000256 NM_000278 NM_000407 NM_000425 NM_000476 NM_000479 NM_000480 NM_000618 NM_000661 NM_000664 NM_000719 NM_000725 NM_000841 NM_000849 NM_000868 NM_000875 NM_000877 NM_000901 NM_000966 NM_000984 NM_001001323 NM_001001411 NM_001001418 NM_001001549 NM_001001550 NM_001001555 NM_001001677 NM_001001699 NM_001001704 NM_001001709 NM_001001795 NM_001001928 NM_001001929 NM_001001930 NM_001003395 NM_001003396 NM_001003397 NM_001003689 NM_001003940 NM_001003942 NM_001003943 NM_001004298 NM_001004354 NM_001004720 NM_001004722 NM_001005303 NM_001005387 NM_001005502 NM_001007538 NM_001008405 NM_001008409 NM_001008563 NM_001008737 NM_001009909 NM_001009931 NM_001011666 NM_001011703 NM_001012707 NM_001012729 NM_001012733 NM_001012734 NM_001012981 NM_001013630 NM_001013645 NM_001013671 NM_001013698 NM_001013705 NM_001017392 NM_001017421 NM_001017440 NM_001017972 NM_001017989 NM_001017995 NM_001024401 NM_001024921 NM_001025081 NM_001025090 NM_001025092 NM_001025094 NM_001025098 NM_001025101 NM_001114 NM_001119 NM_001175 NM_001194 NM_001229 NM_001297 NM_001386 NM_001389 NM_001406 NM_001412 NM_001422 NM_001440 NM_001451 NM_001454 NM_001519 NM_001585 NM_001630 NM_001649 NM_001759 NM_001761 NM_001805 NM_001858 NM_001874 NM_002019 NM_002079 NM_002099 NM_002100 NM_002119 NM_002146 NM_002160 NM_002203 NM_002350 NM_002385 NM_002428 NM_002474 NM_002501 NM_002507 NM_002517 NM_002581 NM_002601 NM_002657 NM_002719 NM_002753 NM_002869 NM_002891 NM_002909 NM_002994 NM_003012 NM_003023 NM_003074 NM_003215 NM_003287 NM_003300 NM_003311 NM_003378 NM_003382 NM_003392 NM_003396 NM_003443 NM_003557 NM_003581 NM_003656 NM_003679 NM_003681 NM_003722 NM_003759 NM_003770 NM_003891 NM_003921 NM_003959 NM_003987 NM_003988 NM_003989 NM_003990 NM_004036 NM_004049 NM_004098 NM_004112 NM_004121 NM_004172 NM_004174 NM_004287 NM_004293 NM_004296 NM_004368 NM_004370 NM_004401 NM_004405 NM_004428 NM_004441 NM_004516 NM_004524 NM_004593 NM_004624 NM_004630 NM_004730 NM_004736 NM_004772 NM_004798 NM_004863 NM_004904 NM_004924 NM_004925 NM_004928 NM_005036 NM_005067 NM_005132 NM_005184 NM_005206 NM_005281 NM_005297 NM_005311 NM_005312 NM_005318 NM_005368 NM_005400 NM_005475 NM_005542 NM_005567 NM_005663 NM_005668 NM_005677 NM_005742 NM_005789 NM_005866 NM_005984 NM_006011 NM_006033 NM_006114 NM_006128 NM_006130 NM_006131 NM_006132 NM_006135 NM_006162 NM_006165 NM_006301 NM_006306 NM_006377 NM_006426 NM_006460 NM_006493 NM_006549 NM_006676 NM_006688 NM_006825 NM_006860 NM_006979 NM_007030 NM_007050 NM_007174 NM_007175 NM_007189 NM_007249 NM_007294 NM_007295 NM_007296 NM_007297 NM_007298 NM_007299 NM_007300 NM_007301 NM_007302 NM_007303 NM_007304 NM_007305 NM_007306 NM_012069 NM_012083 NM_012126 NM_012135 NM_012215 NM_012217 NM_012237 NM_012244 NM_012280 NM_012289 NM_012312 NM_012314 NM_012321 NM_012322 NM_012384 NM_012398 NM_013305 NM_013396 NM_013397 NM_013402 NM_013433 NM_013447 NM_014035 NM_014189 NM_014190 NM_014218 NM_014219 NM_014276 NM_014298 NM_014384 NM_014478 NM_014513 NM_014601 NM_014615 NM_014634 NM_014730 NM_014734 NM_014835 NM_014850 NM_014854 NM_014872 NM_014910 NM_014913 NM_014924 NM_014948 NM_014963 NM_015004 NM_015009 NM_015074 NM_015086 NM_015129 NM_015166 NM_015169 NM_015173 NM_015224 NM_015251 NM_015253 NM_015318 NM_015347 NM_015378 NM_015395 NM_015417 NM_015438 NM_015477 NM_015516 NM_015518 NM_015557 NM_015627 NM_015711 NM_015896 NM_015898 NM_015949 NM_015953 NM_015993 NM_016045 NM_016063 NM_016093 NM_016169 NM_016202 NM_016270 NM_016297 NM_016346 NM_016467 NM_016526 NM_016823 NM_017418 NM_017460 NM_017569 NM_017622 NM_017638 NM_017654 NM_017694 NM_017745 NM_017749 NM_017772 NM_017786 NM_017799 NM_017849 NM_017924 NM_017928 NM_017982 NM_017983 NM_017999 NM_018043 NM_018046 NM_018084 NM_018090 NM_018097 NM_018106 NM_018156 NM_018223 NM_018257 NM_018276 NM_018300 NM_018383 NM_018390 NM_018453 NM_018641 NM_018689 NM_018715 NM_018844 NM_018942 NM_018964 NM_019069 NM_019074 NM_019085 NM_019119 NM_019644 NM_019892 NM_020038 NM_020127 NM_020133 NM_020315 NM_020394 NM_020428 NM_020431 NM_020462 NM_020673 NM_020699 NM_020761 NM_020777 NM_020898 NM_020925 NM_020927 NM_021025 NM_021079 NM_021237 NM_021825 NM_021977 NM_021996 NM_022003 NM_022042 NM_022046 NM_022049 NM_022076 NM_022093 NM_022482 NM_022567 NM_022740 NM_022783 NM_022844 NM_022965 NM_022973 NM_022974 NM_023067 NM_023934 NM_023938 NM_023939 NM_024003 NM_024034 NM_024068 NM_024110 NM_024112 NM_024119 NM_024301 NM_024342 NM_024510 NM_024533 NM_024554 NM_024558 NM_024610 NM_024698 NM_024738 NM_024742 NM_024785 NM_024832 NM_024859 NM_024921 NM_024922 NM_024941 NM_025002 NM_025136 NM_025158 NM_030582 NM_030593 NM_030643 NM_030645 NM_030665 NM_030773 NM_030928 NM_030964 NM_031213 NM_031304 NM_031459 NM_031462 NM_031468 NM_031474 NM_031475 NM_031904 NM_031949 NM_032015 NM_032144 NM_032192 NM_032251 NM_032284 NM_032294 NM_032296 NM_032379 NM_032430 NM_032464 NM_032508 NM_032554 NM_032569 NM_032682 NM_032683 NM_032710 NM_032714 NM_032753 NM_032777 NM_032781 NM_032792 NM_032864 NM_032874 NM_032924 NM_032930 NM_032943 NM_032958 NM_032959 NM_032994 NM_032995 NM_032996 NM_033083 NM_033131 NM_033201 NM_033226 NM_033503 NM_052857 NM_052897 NM_052898 NM_052933 NM_052941 NM_052970 NM_053042 NM_053056 NM_053277 NM_054016 NM_058169 NM_079834 NM_080538 NM_080539 NM_080540 NM_080541 NM_080542 NM_080543 NM_080544 NM_080621 NM_080645 NM_080821 NM_080870 NM_101395 NM_130437 NM_130438 NM_130444 NM_130445 NM_130807 NM_133170 NM_133452 NM_133468 NM_133625 NM_134324 NM_138288 NM_138333 NM_138346 NM_138348 NM_138395 NM_138450 NM_138499 NM_138640 NM_138934 NM_138980 NM_138981 NM_138982 NM_139015 NM_139021 NM_139125 NM_139170 NM_139202 NM_139275 NM_144498 NM_144586 NM_144631 NM_144976 NM_144982 NM_145041 NM_145052 NM_145061 NM_145175 NM_145187 NM_145188 NM_145189 NM_145190 NM_145314 NM_145328 NM_145660 NM_145685 NM_145725 NM_145726 NM_145763 NM_145799 NM_145818 NM_147157 NM_147158 NM_147159 NM_147160 NM_147191 NM_147202 NM_148170 NM_152275 NM_152314 NM_152463 NM_152506 NM_152507 NM_152619 NM_152667 NM_152722 NM_152727 NM_152760 NM_152854 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_152934 NM_153031 NM_153256 NM_153340 NM_153367 NM_153443 NM_153464 NM_153499 NM_153500 NM_153619 NM_153688 NM_153815 NM_170781 NM_172206 NM_172216 NM_172226 NM_172239 NM_172387 NM_172388 NM_172389 NM_173463 NM_173466 NM_173551 NM_173583 NM_173602 NM_173617 NM_173669 NM_173677 NM_173680 NM_175607 NM_175612 NM_175736 NM_175895 NM_176801 NM_176863 NM_177401 NM_177434 NM_177439 NM_177452 NM_178026 NM_178228 NM_178516 NM_178543 NM_178586 NM_178831 NM_178835 NM_181268 NM_181270 NM_181283 NM_181285 NM_181286 NM_181287 NM_181288 NM_181290 NM_181291 NM_181292 NM_181293 NM_181294 NM_181295 NM_181296 NM_181297 NM_181298 NM_181299 NM_181300 NM_181301 NM_181505 NM_181776 NM_182497 NM_182525 NM_182527 NM_182533 NM_182621 NM_182664 NM_182685 NM_182728 NM_182898 NM_182899 NM_183009 NM_194303 NM_194309 NM_194316 NM_194326 NM_198320 NM_198336 NM_198337 NM_198381 NM_198404 NM_198442 NM_198527 NM_198545 NM_198563 NM_198679 NM_198835 NM_198859 NM_198887 NM_198896 NM_198900 NM_198907 NM_199050 NM_199075 NM_199350 NM_199415 NM_199513 NM_201277 NM_201565 NM_203304 NM_203377 NM_203378 NM_203463 NM_203500 NM_206887 NM_206927 NM_206928 NM_206929 NM_206930 NM_207115 NM_207306 NM_207333 NM_207335 NM_207349 NM_207367 NM_207389 NM_207394 NM_207401 NM_207419 NM_207430 NM_207462 NM_207473 NM_207581 NM_207646 NM_212467 NM_213566 NM_213568 NM_213613 XM_032571 XM_032945 XM_032996 XM_039877 XM_040592 XM_047355 XM_086876 XM_097792 XM_290401 XM_290540 XM_290811 XM_291028 XM_293416 XM_294960 XM_370696 XM_371009 XM_371374 XM_371488 XM_371558 XM_372214 XM_372716 XM_373453 XM_373600 XM_373650 XM_373737 XM_373742 XM_373765 XM_373831 XM_373893 XM_375292 XM_375500 XM_375558 XM_376018 XM_376550 XM_376679 XM_376784 XM_378208 XM_378240 XM_378316 XM_378394 XM_378412 XM_378667 XM_378698 XM_378760 XM_378825 XM_378842 XM_378860 XM_378861 XM_378993 XM_379194 XM_379204 XM_379206 XM_379355 XM_379398 XM_379406 XM_379459 XM_379877 XM_379933 XM_495796 XM_495908 XM_495939 XM_496826 XM_496981 XM_496982 XM_496983 XM_496984 XM_496985 XM_497110 XM_498456 XM_498464 XM_498473 XM_498487 XM_498508 XM_498557 XM_498563 XM_498612 XM_498649 XM_498666 XM_498696 XM_498736 XM_498737 XM_498917 XM_499003 XM_499046 XM_499110 XM_499585 XM_499594 XR_000184 XR_000216 XR_000227 XR_000266 XR_000268 XR_000294	Genes with multiple seed matches: NM_000076 NM_000407 NM_000664 NM_001001549 NM_001001550 NM_001001555 NM_001005303 NM_001011666 NM_001012981 NM_001114 NM_004904 NM_005311 NM_005567 NM_013305 NM_014948 NM_015129 NM_015166 NM_015516 NM_015898 NM_015949 NM_019085 NM_020431 NM_021025 NM_024034 NM_030665 NM_032251 NM_032753 NM_033083 NM_139202 NM_145799 NM_145818 NM_172239 NM_182898 NM_182899 NM_198835 NM_198859 NM_199050 NM_199415 XM_376784 XM_378860 XM_496981 XM_496983 XM_496985 XR_000268

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA