VIRsiRNAdb

Predicted off-targets seeds for siRNA "uggcgagggacauuaaggcgu" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :1334.
Total Genes with multiple seed matches: 122.
Genes with at least one seed match: NM_000017 NM_000059 NM_000131 NM_000136 NM_000164 NM_000188 NM_000238 NM_000252 NM_000278 NM_000330 NM_000342 NM_000365 NM_000376 NM_000417 NM_000418 NM_000436 NM_000451 NM_000486 NM_000516 NM_000520 NM_000577 NM_000579 NM_000581 NM_000602 NM_000611 NM_000664 NM_000693 NM_000719 NM_000722 NM_000732 NM_000740 NM_000747 NM_000764 NM_000815 NM_000834 NM_000842 NM_000843 NM_000911 NM_000913 NM_000930 NM_000931 NM_000950 NM_000960 NM_000994 NM_001001349 NM_001001395 NM_001001418 NM_001001433 NM_001001434 NM_001001563 NM_001001669 NM_001001688 NM_001001690 NM_001001697 NM_001001699 NM_001001715 NM_001001716 NM_001001791 NM_001001794 NM_001001795 NM_001001938 NM_001002034 NM_001003399 NM_001003682 NM_001003828 NM_001003897 NM_001004301 NM_001004307 NM_001004314 NM_001004336 NM_001004354 NM_001004722 NM_001005210 NM_001005303 NM_001005366 NM_001005372 NM_001005373 NM_001005374 NM_001005404 NM_001005498 NM_001005502 NM_001005910 NM_001005911 NM_001005912 NM_001005913 NM_001005920 NM_001006116 NM_001006638 NM_001007024 NM_001007025 NM_001007073 NM_001007074 NM_001007466 NM_001007559 NM_001008220 NM_001008222 NM_001008563 NM_001008658 NM_001008701 NM_001008895 NM_001009610 NM_001009880 NM_001010898 NM_001011538 NM_001011554 NM_001011708 NM_001012644 NM_001012651 NM_001012659 NM_001012733 NM_001012734 NM_001012982 NM_001013415 NM_001013436 NM_001013440 NM_001013622 NM_001013634 NM_001013635 NM_001013652 NM_001013655 NM_001013661 NM_001013670 NM_001013693 NM_001013708 NM_001013721 NM_001013726 NM_001013748 NM_001014374 NM_001017408 NM_001017423 NM_001017535 NM_001018 NM_001018003 NM_001018050 NM_001018051 NM_001018052 NM_001024074 NM_001024669 NM_001024670 NM_001024671 NM_001024681 NM_001024808 NM_001024959 NM_001024960 NM_001025076 NM_001025077 NM_001025232 NM_001025266 NM_001036 NM_001049 NM_001092 NM_001114 NM_001122 NM_001174 NM_001217 NM_001219 NM_001233 NM_001419 NM_001421 NM_001440 NM_001585 NM_001606 NM_001670 NM_001674 NM_001696 NM_001715 NM_001830 NM_001874 NM_001909 NM_001957 NM_001958 NM_001965 NM_001986 NM_001987 NM_002060 NM_002092 NM_002095 NM_002099 NM_002142 NM_002160 NM_002167 NM_002265 NM_002353 NM_002388 NM_002407 NM_002442 NM_002465 NM_002478 NM_002481 NM_002562 NM_002570 NM_002579 NM_002586 NM_002588 NM_002596 NM_002666 NM_002689 NM_002757 NM_002819 NM_002834 NM_002847 NM_002860 NM_002894 NM_002895 NM_002908 NM_002913 NM_002914 NM_002919 NM_002941 NM_002957 NM_003004 NM_003024 NM_003107 NM_003108 NM_003156 NM_003173 NM_003189 NM_003195 NM_003206 NM_003238 NM_003247 NM_003251 NM_003300 NM_003311 NM_003330 NM_003337 NM_003341 NM_003382 NM_003423 NM_003457 NM_003470 NM_003473 NM_003474 NM_003574 NM_003589 NM_003607 NM_003629 NM_003644 NM_003661 NM_003735 NM_003736 NM_003748 NM_003763 NM_003778 NM_003790 NM_003815 NM_003831 NM_003885 NM_003898 NM_003904 NM_003927 NM_003938 NM_003946 NM_003950 NM_003965 NM_003987 NM_003988 NM_003989 NM_003990 NM_004024 NM_004111 NM_004128 NM_004142 NM_004175 NM_004227 NM_004273 NM_004276 NM_004283 NM_004320 NM_004350 NM_004416 NM_004430 NM_004513 NM_004516 NM_004518 NM_004532 NM_004549 NM_004554 NM_004567 NM_004588 NM_004612 NM_004614 NM_004624 NM_004635 NM_004637 NM_004675 NM_004734 NM_004759 NM_004816 NM_004841 NM_004845 NM_004848 NM_004854 NM_004860 NM_004871 NM_004883 NM_004973 NM_004983 NM_004997 NM_005018 NM_005042 NM_005053 NM_005057 NM_005085 NM_005108 NM_005126 NM_005146 NM_005207 NM_005220 NM_005233 NM_005324 NM_005334 NM_005347 NM_005385 NM_005400 NM_005461 NM_005479 NM_005491 NM_005515 NM_005519 NM_005522 NM_005550 NM_005637 NM_005670 NM_005699 NM_005715 NM_005718 NM_005738 NM_005768 NM_005775 NM_005789 NM_005843 NM_005858 NM_005864 NM_005883 NM_005923 NM_005937 NM_005957 NM_006065 NM_006096 NM_006122 NM_006132 NM_006138 NM_006160 NM_006167 NM_006184 NM_006275 NM_006276 NM_006279 NM_006319 NM_006332 NM_006345 NM_006361 NM_006373 NM_006374 NM_006387 NM_006388 NM_006399 NM_006403 NM_006454 NM_006502 NM_006522 NM_006532 NM_006549 NM_006556 NM_006561 NM_006581 NM_006628 NM_006650 NM_006673 NM_006676 NM_006731 NM_006738 NM_006742 NM_006771 NM_006801 NM_006814 NM_006859 NM_006861 NM_006887 NM_006990 NM_006992 NM_007030 NM_007177 NM_007200 NM_007203 NM_007232 NM_007249 NM_007331 NM_009589 NM_012068 NM_012102 NM_012118 NM_012134 NM_012232 NM_012236 NM_012288 NM_012304 NM_012305 NM_012309 NM_012318 NM_012346 NM_012395 NM_012398 NM_012405 NM_012413 NM_012429 NM_013231 NM_013282 NM_013289 NM_013312 NM_013325 NM_013327 NM_013337 NM_013341 NM_013364 NM_013372 NM_013382 NM_013385 NM_013416 NM_013423 NM_013427 NM_013431 NM_013434 NM_013447 NM_013981 NM_013982 NM_013983 NM_014012 NM_014033 NM_014236 NM_014240 NM_014263 NM_014285 NM_014306 NM_014354 NM_014368 NM_014435 NM_014459 NM_014468 NM_014503 NM_014504 NM_014511 NM_014518 NM_014520 NM_014547 NM_014551 NM_014552 NM_014569 NM_014603 NM_014636 NM_014647 NM_014665 NM_014682 NM_014728 NM_014732 NM_014741 NM_014743 NM_014747 NM_014760 NM_014765 NM_014767 NM_014801 NM_014826 NM_014865 NM_014909 NM_014916 NM_014921 NM_014951 NM_014957 NM_014997 NM_015020 NM_015047 NM_015060 NM_015066 NM_015074 NM_015078 NM_015094 NM_015099 NM_015124 NM_015127 NM_015173 NM_015192 NM_015224 NM_015226 NM_015227 NM_015229 NM_015236 NM_015245 NM_015253 NM_015254 NM_015264 NM_015266 NM_015320 NM_015374 NM_015380 NM_015381 NM_015409 NM_015417 NM_015458 NM_015463 NM_015541 NM_015542 NM_015553 NM_015557 NM_015571 NM_015604 NM_015627 NM_015641 NM_015651 NM_015666 NM_015683 NM_015695 NM_015836 NM_015868 NM_015891 NM_015972 NM_015995 NM_016025 NM_016032 NM_016101 NM_016114 NM_016176 NM_016257 NM_016263 NM_016339 NM_016356 NM_016358 NM_016368 NM_016423 NM_016470 NM_016547 NM_016553 NM_016559 NM_016588 NM_016592 NM_017433 NM_017514 NM_017550 NM_017595 NM_017671 NM_017705 NM_017708 NM_017725 NM_017742 NM_017758 NM_017760 NM_017773 NM_017776 NM_017793 NM_017799 NM_017813 NM_017851 NM_017865 NM_017879 NM_017891 NM_017968 NM_017979 NM_017983 NM_018023 NM_018026 NM_018027 NM_018030 NM_018035 NM_018068 NM_018069 NM_018090 NM_018166 NM_018198 NM_018201 NM_018205 NM_018209 NM_018210 NM_018214 NM_018239 NM_018292 NM_018315 NM_018324 NM_018330 NM_018389 NM_018406 NM_018556 NM_018579 NM_018640 NM_018644 NM_018667 NM_018717 NM_018841 NM_018912 NM_018913 NM_018914 NM_018915 NM_018916 NM_018917 NM_018918 NM_018919 NM_018920 NM_018921 NM_018922 NM_018923 NM_018924 NM_018925 NM_018926 NM_018927 NM_018928 NM_018929 NM_018977 NM_018992 NM_019008 NM_019057 NM_019064 NM_019081 NM_019089 NM_019119 NM_019610 NM_019616 NM_020038 NM_020121 NM_020133 NM_020165 NM_020168 NM_020179 NM_020182 NM_020231 NM_020245 NM_020247 NM_020385 NM_020399 NM_020439 NM_020448 NM_020451 NM_020524 NM_020630 NM_020632 NM_020652 NM_020708 NM_020717 NM_020737 NM_020739 NM_020750 NM_020764 NM_020766 NM_020781 NM_020796 NM_020802 NM_020896 NM_020914 NM_020925 NM_020931 NM_020993 NM_021020 NM_021079 NM_021090 NM_021116 NM_021126 NM_021192 NM_021218 NM_021242 NM_021257 NM_021260 NM_021619 NM_021629 NM_021637 NM_021643 NM_021649 NM_021807 NM_021808 NM_021820 NM_021945 NM_021962 NM_021967 NM_021973 NM_021996 NM_022049 NM_022070 NM_022077 NM_022103 NM_022119 NM_022170 NM_022484 NM_022720 NM_022773 NM_022784 NM_022819 NM_022829 NM_022978 NM_023013 NM_023014 NM_023018 NM_024026 NM_024029 NM_024295 NM_024297 NM_024522 NM_024585 NM_024589 NM_024599 NM_024607 NM_024629 NM_024649 NM_024653 NM_024664 NM_024676 NM_024699 NM_024701 NM_024719 NM_024736 NM_024754 NM_024773 NM_024784 NM_024859 NM_024875 NM_024876 NM_024887 NM_024952 NM_024954 NM_025078 NM_025084 NM_025090 NM_025104 NM_025248 NM_025251 NM_030589 NM_030627 NM_030661 NM_030783 NM_030806 NM_030891 NM_030895 NM_030912 NM_030914 NM_030919 NM_030930 NM_030964 NM_031205 NM_031213 NM_031227 NM_031228 NM_031295 NM_031461 NM_031479 NM_031990 NM_031991 NM_031992 NM_032017 NM_032046 NM_032088 NM_032092 NM_032105 NM_032121 NM_032153 NM_032177 NM_032192 NM_032213 NM_032296 NM_032317 NM_032366 NM_032403 NM_032432 NM_032459 NM_032486 NM_032546 NM_032565 NM_032578 NM_032590 NM_032683 NM_032689 NM_032705 NM_032706 NM_032789 NM_032807 NM_032815 NM_032874 NM_032921 NM_032937 NM_032960 NM_032968 NM_032969 NM_032988 NM_032995 NM_032998 NM_033011 NM_033025 NM_033083 NM_033131 NM_033141 NM_033200 NM_033331 NM_033375 NM_033397 NM_033419 NM_033420 NM_033449 NM_033496 NM_033497 NM_033498 NM_033500 NM_033543 NM_033549 NM_033632 NM_033656 NM_048368 NM_052845 NM_052847 NM_052864 NM_052910 NM_052933 NM_052934 NM_053044 NM_054025 NM_058167 NM_058172 NM_080425 NM_080426 NM_080552 NM_080597 NM_080599 NM_080611 NM_080612 NM_080616 NM_080764 NM_080816 NM_080874 NM_130466 NM_130840 NM_130841 NM_130842 NM_130843 NM_133268 NM_133451 NM_133463 NM_133631 NM_133634 NM_134325 NM_138297 NM_138298 NM_138299 NM_138300 NM_138319 NM_138338 NM_138347 NM_138361 NM_138375 NM_138401 NM_138442 NM_138454 NM_138699 NM_138768 NM_138969 NM_138983 NM_139136 NM_139201 NM_139265 NM_139312 NM_139321 NM_144626 NM_144706 NM_144719 NM_144767 NM_144970 NM_144988 NM_144997 NM_145013 NM_145035 NM_145040 NM_145061 NM_145080 NM_145102 NM_145113 NM_145160 NM_145162 NM_145185 NM_145212 NM_145213 NM_145260 NM_145309 NM_145323 NM_145324 NM_145342 NM_145343 NM_145638 NM_145646 NM_145650 NM_145654 NM_145693 NM_145699 NM_145725 NM_145726 NM_145752 NM_145805 NM_145807 NM_145906 NM_147150 NM_147160 NM_147192 NM_147202 NM_148912 NM_148913 NM_148915 NM_148965 NM_148966 NM_148967 NM_148968 NM_148969 NM_148970 NM_148971 NM_148972 NM_148973 NM_148974 NM_152253 NM_152257 NM_152259 NM_152280 NM_152305 NM_152371 NM_152372 NM_152387 NM_152421 NM_152449 NM_152450 NM_152460 NM_152470 NM_152482 NM_152540 NM_152569 NM_152600 NM_152609 NM_152689 NM_152702 NM_152704 NM_152760 NM_152829 NM_152888 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921 NM_153012 NM_153031 NM_153035 NM_153042 NM_153050 NM_153051 NM_153209 NM_153239 NM_153260 NM_153345 NM_153358 NM_153373 NM_153443 NM_153456 NM_153464 NM_153499 NM_153500 NM_153620 NM_153631 NM_153632 NM_153712 NM_153718 NM_153719 NM_153748 NM_153750 NM_153823 NM_170686 NM_170692 NM_170705 NM_170746 NM_171982 NM_172024 NM_172057 NM_172070 NM_172216 NM_172217 NM_172225 NM_172226 NM_172239 NM_173042 NM_173043 NM_173075 NM_173201 NM_173354 NM_173527 NM_173555 NM_173580 NM_173583 NM_173618 NM_173653 NM_173657 NM_173661 NM_173681 NM_173687 NM_173795 NM_173841 NM_173842 NM_173843 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 NM_174972 NM_175066 NM_175078 NM_175609 NM_175767 NM_175847 NM_175876 NM_175901 NM_175921 NM_176799 NM_176815 NM_176863 NM_177427 NM_177964 NM_177991 NM_178012 NM_178128 NM_178129 NM_178150 NM_178326 NM_178344 NM_178441 NM_178578 NM_178579 NM_178867 NM_181340 NM_181341 NM_181457 NM_181458 NM_181459 NM_181460 NM_181471 NM_181489 NM_181505 NM_181709 NM_181725 NM_181844 NM_181846 NM_181862 NM_181863 NM_182501 NM_182520 NM_182525 NM_182540 NM_182577 NM_182578 NM_182647 NM_182666 NM_182709 NM_182710 NM_182729 NM_182734 NM_182742 NM_182743 NM_182812 NM_182894 NM_182933 NM_183376 NM_183382 NM_183414 NM_183415 NM_183416 NM_187841 NM_194282 NM_194286 NM_194290 NM_194298 NM_194303 NM_194310 NM_194315 NM_194316 NM_194352 NM_194434 NM_194451 NM_194457 NM_194458 NM_194460 NM_198074 NM_198080 NM_198152 NM_198182 NM_198207 NM_198212 NM_198320 NM_198396 NM_198441 NM_198442 NM_198461 NM_198486 NM_198504 NM_198553 NM_198562 NM_198585 NM_198681 NM_198682 NM_198723 NM_198835 NM_198844 NM_198989 NM_199045 NM_199131 NM_199138 NM_199141 NM_199160 NM_199163 NM_199169 NM_199170 NM_199171 NM_199175 NM_199423 NM_199427 NM_199511 NM_199512 NM_201263 NM_201397 NM_201432 NM_201433 NM_201520 NM_201542 NM_201627 NM_201628 NM_201650 NM_202001 NM_203291 NM_203292 NM_203329 NM_203330 NM_203331 NM_203374 NM_203426 NM_205861 NM_206819 NM_206820 NM_206821 NM_206926 NM_207106 NM_207112 NM_207119 NM_207191 NM_207194 NM_207195 NM_207196 NM_207197 NM_207306 NM_207320 NM_207330 NM_207336 NM_207368 NM_207401 NM_207404 NM_207428 NM_207462 NM_207467 NM_207483 NM_207484 NM_207502 NM_207505 NM_207510 NM_207511 NM_212460 NM_212481 NM_212502 NM_212503 NM_212533 NM_212543 NM_213649 NM_213650 NM_213726 NM_214462 XM_029962 XM_031553 XM_032278 XM_032996 XM_035601 XM_038150 XM_039721 XM_039877 XM_043272 XM_044062 XM_046600 XM_047554 XM_051017 XM_051081 XM_059037 XM_084852 XM_086876 XM_097580 XM_113763 XM_170842 XM_172874 XM_173132 XM_208847 XM_211871 XM_211908 XM_290949 XM_291671 XM_291816 XM_294778 XM_370758 XM_371184 XM_371354 XM_371461 XM_371801 XM_371851 XM_373431 XM_373513 XM_373561 XM_373578 XM_373786 XM_373811 XM_373821 XM_373950 XM_374113 XM_374141 XM_374163 XM_374414 XM_374902 XM_374915 XM_375065 XM_375090 XM_375275 XM_375359 XM_375373 XM_375606 XM_375816 XM_375928 XM_376154 XM_376587 XM_376784 XM_376902 XM_377742 XM_378259 XM_378279 XM_378299 XM_378301 XM_378436 XM_378473 XM_378487 XM_378549 XM_378573 XM_378608 XM_378617 XM_378712 XM_378730 XM_378756 XM_378758 XM_378795 XM_378852 XM_378855 XM_378858 XM_378886 XM_378914 XM_378970 XM_379025 XM_379046 XM_379114 XM_379118 XM_379135 XM_379145 XM_379214 XM_379230 XM_379255 XM_379363 XM_379381 XM_379386 XM_379454 XM_379458 XM_379512 XM_379540 XM_379541 XM_379543 XM_379664 XM_379665 XM_379668 XM_379671 XM_379684 XM_379696 XM_379722 XM_379780 XM_380103 XM_380135 XM_495888 XM_495902 XM_495950 XM_496143 XM_496408 XM_496442 XM_496519 XM_496691 XM_496836 XM_496879 XM_496889 XM_496943 XM_496976 XM_496981 XM_496983 XM_496984 XM_496985 XM_497092 XM_498442 XM_498443 XM_498473 XM_498491 XM_498563 XM_498581 XM_498614 XM_498666 XM_498677 XM_498683 XM_498687 XM_498727 XM_498751 XM_498855 XM_498894 XM_498904 XM_498917 XM_499008 XM_499093 XM_499169 XM_499182 XM_499298 XM_499312 XM_499362 XM_499572 XM_499573 XR_000195 XR_000259 XR_000268	Genes with multiple seed matches: NM_000451 NM_000719 NM_000913 NM_001001349 NM_001001716 NM_001003682 NM_001004354 NM_001005210 NM_001007024 NM_001007025 NM_001008220 NM_001009880 NM_001012651 NM_001013721 NM_001013726 NM_001024959 NM_001024960 NM_001174 NM_001987 NM_002099 NM_002562 NM_002834 NM_003108 NM_003206 NM_003382 NM_003644 NM_003778 NM_004430 NM_004871 NM_005334 NM_005400 NM_005718 NM_006373 NM_006650 NM_006738 NM_007200 NM_007331 NM_012398 NM_012405 NM_012429 NM_013282 NM_014569 NM_014603 NM_014665 NM_014801 NM_014909 NM_015226 NM_015264 NM_015409 NM_015541 NM_017514 NM_017595 NM_018027 NM_018069 NM_018090 NM_018644 NM_018717 NM_018841 NM_018992 NM_020708 NM_021116 NM_021637 NM_024653 NM_025084 NM_030661 NM_030895 NM_032153 NM_033420 NM_058167 NM_080612 NM_138347 NM_144767 NM_145102 NM_145212 NM_145646 NM_147202 NM_152253 NM_152371 NM_152760 NM_153631 NM_153632 NM_170705 NM_172217 NM_173354 NM_173527 NM_177427 NM_177964 NM_178129 NM_182647 NM_194290 NM_194315 NM_194316 NM_194457 NM_194458 NM_198080 NM_198442 NM_201432 NM_201433 NM_203426 NM_207330 NM_207401 NM_207511 NM_212543 XM_032996 XM_038150 XM_051017 XM_373786 XM_374141 XM_375275 XM_375373 XM_376902 XM_378855 XM_378858 XM_379025 XM_379145 XM_379458 XM_496836 XM_496889 XM_498563 XM_498917 XM_499312 XR_000268

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA