VIRsiRNAdb

Predicted off-targets seeds for siRNA "aggcguacgucgaucgaucgg" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :189.
Total Genes with multiple seed matches: 4.
Genes with at least one seed match: NM_000161 NM_000278 NM_000351 NM_000636 NM_000838 NM_001004328 NM_001005291 NM_001005336 NM_001007279 NM_001009566 NM_001011708 NM_001012267 NM_001012651 NM_001013633 NM_001013696 NM_001014373 NM_001018021 NM_001023567 NM_001024465 NM_001024466 NM_001024646 NM_001183 NM_001218 NM_001466 NM_001534 NM_001634 NM_001642 NM_001821 NM_002062 NM_002105 NM_002165 NM_002229 NM_002920 NM_002926 NM_003042 NM_003108 NM_003258 NM_003687 NM_003806 NM_003839 NM_003861 NM_003987 NM_003988 NM_003989 NM_003990 NM_004170 NM_004176 NM_004398 NM_004454 NM_004482 NM_004583 NM_004948 NM_004992 NM_005297 NM_005370 NM_005388 NM_006037 NM_006067 NM_006079 NM_006121 NM_006202 NM_006276 NM_006286 NM_006315 NM_006344 NM_006359 NM_006361 NM_006477 NM_006496 NM_006549 NM_006987 NM_007046 NM_007236 NM_007246 NM_012463 NM_013341 NM_014069 NM_014383 NM_014573 NM_014944 NM_015003 NM_015033 NM_015359 NM_015438 NM_015544 NM_015892 NM_016170 NM_016354 NM_016545 NM_017629 NM_018071 NM_018120 NM_018518 NM_018579 NM_018715 NM_019009 NM_019885 NM_020170 NM_020472 NM_020473 NM_020552 NM_020553 NM_020714 NM_020805 NM_021180 NM_021255 NM_022041 NM_022459 NM_022755 NM_024561 NM_024633 NM_024722 NM_025042 NM_030631 NM_030774 NM_030968 NM_031484 NM_032108 NM_032109 NM_032374 NM_032515 NM_032529 NM_033036 NM_058187 NM_130830 NM_138415 NM_138793 NM_139179 NM_145328 NM_145693 NM_152272 NM_153350 NM_153499 NM_153500 NM_153639 NM_153840 NM_172216 NM_172226 NM_173215 NM_173621 NM_173803 NM_173855 NM_177424 NM_178568 NM_181076 NM_181077 NM_181353 NM_182751 NM_182906 NM_194287 NM_198173 NM_198174 NM_198593 NM_198594 NM_199045 NM_201434 NM_201651 NM_206925 NM_207103 NM_207372 NM_207423 XM_032996 XM_036936 XM_036942 XM_208990 XM_298151 XM_371429 XM_371823 XM_373744 XM_374078 XM_378202 XM_378982 XM_378983 XM_379069 XM_379146 XM_379452 XM_379458 XM_379636 XM_496959 XM_496966 XM_498465 XM_498479 XM_498484 XM_498681 XM_498917 XM_499093 XM_499595 XR_000190 XR_000265	Genes with multiple seed matches: NM_004583 NM_130830 NM_181353 NM_201434

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA