VIRsiRNAdb

Predicted off-targets seeds for siRNA "aaugcaucgaagucguaca" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :539.
Total Genes with multiple seed matches: 14.
Genes with at least one seed match: NM_000037 NM_000053 NM_000093 NM_000161 NM_000214 NM_000268 NM_000307 NM_000325 NM_000332 NM_000346 NM_000428 NM_000452 NM_000844 NM_000899 NM_000912 NM_000991 NM_001001675 NM_001001685 NM_001002762 NM_001002861 NM_001003665 NM_001003688 NM_001004305 NM_001004330 NM_001005388 NM_001005918 NM_001006604 NM_001006932 NM_001007254 NM_001008408 NM_001008539 NM_001010924 NM_001010985 NM_001011513 NM_001011514 NM_001011537 NM_001011554 NM_001011658 NM_001012339 NM_001012626 NM_001012733 NM_001012734 NM_001012750 NM_001012751 NM_001012752 NM_001012968 NM_001012981 NM_001013640 NM_001013712 NM_001013746 NM_001017405 NM_001017440 NM_001024024 NM_001024070 NM_001024071 NM_001024843 NM_001025068 NM_001025069 NM_001025079 NM_001025080 NM_001025233 NM_001105 NM_001257 NM_001269 NM_001384 NM_001412 NM_001428 NM_001433 NM_001440 NM_001470 NM_001490 NM_001609 NM_001616 NM_001695 NM_001743 NM_001753 NM_001759 NM_001777 NM_001855 NM_001957 NM_002193 NM_002360 NM_002388 NM_002399 NM_002462 NM_002505 NM_002563 NM_002596 NM_002772 NM_002779 NM_002988 NM_003042 NM_003046 NM_003115 NM_003269 NM_003320 NM_003355 NM_003392 NM_003404 NM_003412 NM_003420 NM_003423 NM_003476 NM_003484 NM_003502 NM_003605 NM_003624 NM_003714 NM_003724 NM_003759 NM_003808 NM_003860 NM_003898 NM_003950 NM_003966 NM_003994 NM_004052 NM_004056 NM_004094 NM_004101 NM_004105 NM_004109 NM_004210 NM_004227 NM_004321 NM_004430 NM_004441 NM_004577 NM_004700 NM_004709 NM_004717 NM_004725 NM_004805 NM_004859 NM_004906 NM_004964 NM_005046 NM_005056 NM_005098 NM_005226 NM_005392 NM_005433 NM_005436 NM_005458 NM_005470 NM_005602 NM_005604 NM_005708 NM_005749 NM_005786 NM_005792 NM_005814 NM_005882 NM_005900 NM_005923 NM_005931 NM_006038 NM_006047 NM_006141 NM_006145 NM_006275 NM_006364 NM_006454 NM_006457 NM_006493 NM_006555 NM_006690 NM_006775 NM_006779 NM_006803 NM_006819 NM_006876 NM_006952 NM_006981 NM_006984 NM_006994 NM_007038 NM_007174 NM_007322 NM_007331 NM_007348 NM_007371 NM_012091 NM_012095 NM_012170 NM_012234 NM_012236 NM_012443 NM_012479 NM_014048 NM_014160 NM_014563 NM_014604 NM_014606 NM_014655 NM_014665 NM_014667 NM_014702 NM_014741 NM_014747 NM_014755 NM_014779 NM_014788 NM_014805 NM_014824 NM_014867 NM_014874 NM_014890 NM_014919 NM_015026 NM_015050 NM_015055 NM_015075 NM_015088 NM_015090 NM_015138 NM_015205 NM_015216 NM_015265 NM_015293 NM_015560 NM_015568 NM_015605 NM_015670 NM_015900 NM_016147 NM_016169 NM_016220 NM_016410 NM_016418 NM_016472 NM_016544 NM_016564 NM_016603 NM_016604 NM_016626 NM_016950 NM_017420 NM_017549 NM_017626 NM_017635 NM_017637 NM_017668 NM_017693 NM_017811 NM_017853 NM_017999 NM_018043 NM_018069 NM_018141 NM_018290 NM_018367 NM_018409 NM_018424 NM_018440 NM_018444 NM_018450 NM_018656 NM_018689 NM_018894 NM_018976 NM_019013 NM_019055 NM_019105 NM_020119 NM_020133 NM_020148 NM_020149 NM_020162 NM_020207 NM_020213 NM_020214 NM_020236 NM_020237 NM_020335 NM_020462 NM_020475 NM_020476 NM_020477 NM_020478 NM_020479 NM_020480 NM_020481 NM_020728 NM_020750 NM_020773 NM_020801 NM_020807 NM_020825 NM_020830 NM_020886 NM_020898 NM_020919 NM_020925 NM_020927 NM_021044 NM_021116 NM_021133 NM_021135 NM_021183 NM_021190 NM_021195 NM_021705 NM_021813 NM_021814 NM_021903 NM_021904 NM_021905 NM_022063 NM_022117 NM_022450 NM_022474 NM_022829 NM_022832 NM_022843 NM_023018 NM_023038 NM_023080 NM_023926 NM_023938 NM_024085 NM_024420 NM_024517 NM_024834 NM_024941 NM_025045 NM_025214 NM_030626 NM_030774 NM_030806 NM_030814 NM_031455 NM_031468 NM_031889 NM_032175 NM_032189 NM_032288 NM_032470 NM_032529 NM_032837 NM_032853 NM_033071 NM_033220 NM_033221 NM_033224 NM_033426 NM_053277 NM_058169 NM_058217 NM_080627 NM_080660 NM_080821 NM_080836 NM_130474 NM_130475 NM_130768 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837 NM_130899 NM_133330 NM_133331 NM_133332 NM_133333 NM_133334 NM_133335 NM_133650 NM_138444 NM_138453 NM_138704 NM_138726 NM_139277 NM_139283 NM_139323 NM_144579 NM_144583 NM_144778 NM_144968 NM_145010 NM_145646 NM_145756 NM_147128 NM_152305 NM_152409 NM_152412 NM_152500 NM_152545 NM_152629 NM_152655 NM_152680 NM_152719 NM_152789 NM_152835 NM_152838 NM_153031 NM_153038 NM_153234 NM_153342 NM_153426 NM_153427 NM_170674 NM_170675 NM_170676 NM_170677 NM_170768 NM_172087 NM_172088 NM_172089 NM_172163 NM_172242 NM_172315 NM_172316 NM_173055 NM_173056 NM_173057 NM_173058 NM_173080 NM_173172 NM_173198 NM_173200 NM_173511 NM_173551 NM_173582 NM_173591 NM_173640 NM_173664 NM_173667 NM_174901 NM_175571 NM_175607 NM_175612 NM_176815 NM_177972 NM_178460 NM_178836 NM_178842 NM_181050 NM_181672 NM_181673 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_181874 NM_182499 NM_182511 NM_182524 NM_182760 NM_182848 NM_182961 NM_194252 NM_194283 NM_197974 NM_198181 NM_198279 NM_198399 NM_198401 NM_198402 NM_198793 NM_198990 NM_198993 NM_199126 NM_199133 NM_201399 NM_203395 NM_207012 NM_207304 NM_207326 NM_207359 NM_207411 NM_207485 NM_212502 NM_212503 NM_213589 NM_213604 XM_039393 XM_069842 XM_085833 XM_113641 XM_166132 XM_166140 XM_290737 XM_294765 XM_370899 XM_373498 XM_373744 XM_375185 XM_375491 XM_375821 XM_376148 XM_376386 XM_376680 XM_378379 XM_378411 XM_378558 XM_378650 XM_378858 XM_378859 XM_379075 XM_379114 XM_379189 XM_379391 XM_379597 XM_379694 XM_379736 XM_379927 XM_379934 XM_380042 XM_495814 XM_495888 XM_495909 XM_496081 XM_496088 XM_496103 XM_496690 XM_496692 XM_496907 XM_498464 XM_498488 XM_498554 XM_498631 XM_498683 XM_498876 XM_498905 XM_499009 XM_499164 XM_499182 XM_499343 XM_499594 XR_000263	Genes with multiple seed matches: NM_000161 NM_000332 NM_000991 NM_003320 NM_004859 NM_018656 NM_133332 NM_133334 NM_138444 NM_177972 NM_181826 NM_181827 XM_039393 XM_379927

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA