VIRsiRNAdb

Predicted off-targets seeds for siRNA "ggaacagaagagcgaacau" Using siRNA Seed Locator Algorithm

siRNA Seed Locator
Total Genes with at least one seed match :801.
Total Genes with multiple seed matches: 32.
Genes with at least one seed match: NM_000088 NM_000113 NM_000114 NM_000167 NM_000206 NM_000242 NM_000243 NM_000248 NM_000268 NM_000278 NM_000322 NM_000332 NM_000430 NM_000439 NM_000458 NM_000476 NM_000594 NM_000611 NM_000664 NM_000759 NM_000786 NM_000814 NM_000861 NM_000907 NM_000910 NM_000915 NM_000916 NM_001001396 NM_001001418 NM_001001482 NM_001001660 NM_001001681 NM_001001694 NM_001001928 NM_001001929 NM_001001930 NM_001002843 NM_001002860 NM_001003398 NM_001003399 NM_001003674 NM_001003675 NM_001003683 NM_001004054 NM_001004302 NM_001004707 NM_001005359 NM_001005364 NM_001005404 NM_001005473 NM_001005502 NM_001005609 NM_001006623 NM_001006634 NM_001007088 NM_001007097 NM_001007529 NM_001008495 NM_001008742 NM_001008781 NM_001009584 NM_001009880 NM_001009957 NM_001009958 NM_001010850 NM_001011666 NM_001011718 NM_001012264 NM_001012338 NM_001012651 NM_001012970 NM_001013711 NM_001013718 NM_001013723 NM_001013726 NM_001013727 NM_001015880 NM_001017395 NM_001017440 NM_001017526 NM_001017915 NM_001017989 NM_001018029 NM_001018057 NM_001018095 NM_001018099 NM_001020658 NM_001024460 NM_001024646 NM_001024654 NM_001024808 NM_001024843 NM_001024947 NM_001025076 NM_001025077 NM_001044 NM_001050 NM_001105 NM_001124 NM_001163 NM_001219 NM_001232 NM_001248 NM_001265 NM_001331 NM_001351 NM_001386 NM_001399 NM_001400 NM_001420 NM_001438 NM_001451 NM_001494 NM_001496 NM_001631 NM_001650 NM_001668 NM_001694 NM_001698 NM_001714 NM_001742 NM_001759 NM_001766 NM_001839 NM_001858 NM_001874 NM_001881 NM_001949 NM_001956 NM_002015 NM_002038 NM_002040 NM_002098 NM_002142 NM_002209 NM_002393 NM_002405 NM_002430 NM_002501 NM_002530 NM_002603 NM_002653 NM_002662 NM_002699 NM_002714 NM_002745 NM_002830 NM_002897 NM_002911 NM_002915 NM_002942 NM_003036 NM_003068 NM_003090 NM_003147 NM_003262 NM_003320 NM_003347 NM_003385 NM_003412 NM_003459 NM_003496 NM_003583 NM_003617 NM_003624 NM_003648 NM_003764 NM_003800 NM_003941 NM_003950 NM_003976 NM_003987 NM_003988 NM_003989 NM_003990 NM_004028 NM_004090 NM_004204 NM_004253 NM_004261 NM_004273 NM_004302 NM_004315 NM_004318 NM_004338 NM_004385 NM_004437 NM_004473 NM_004504 NM_004518 NM_004561 NM_004575 NM_004589 NM_004642 NM_004670 NM_004681 NM_004703 NM_004728 NM_004775 NM_004796 NM_004805 NM_004862 NM_004904 NM_004998 NM_005006 NM_005036 NM_005044 NM_005105 NM_005187 NM_005256 NM_005436 NM_005449 NM_005530 NM_005541 NM_005562 NM_005564 NM_005578 NM_005584 NM_005635 NM_005636 NM_005665 NM_005737 NM_005742 NM_005779 NM_005811 NM_005821 NM_005933 NM_006034 NM_006162 NM_006177 NM_006203 NM_006306 NM_006310 NM_006372 NM_006398 NM_006482 NM_006508 NM_006517 NM_006526 NM_006536 NM_006546 NM_006561 NM_006579 NM_006722 NM_006753 NM_006777 NM_006830 NM_006847 NM_006853 NM_006856 NM_006867 NM_006873 NM_006962 NM_007030 NM_007145 NM_007163 NM_007320 NM_007322 NM_012154 NM_012296 NM_012329 NM_012393 NM_012421 NM_013230 NM_013252 NM_013253 NM_013281 NM_013354 NM_013397 NM_013441 NM_013937 NM_013943 NM_014009 NM_014048 NM_014157 NM_014212 NM_014231 NM_014246 NM_014275 NM_014286 NM_014339 NM_014358 NM_014405 NM_014480 NM_014503 NM_014507 NM_014610 NM_014631 NM_014646 NM_014665 NM_014676 NM_014751 NM_014755 NM_014779 NM_014803 NM_014821 NM_014867 NM_014873 NM_014901 NM_014910 NM_014990 NM_014996 NM_015008 NM_015024 NM_015033 NM_015056 NM_015076 NM_015088 NM_015178 NM_015205 NM_015230 NM_015253 NM_015264 NM_015282 NM_015345 NM_015409 NM_015652 NM_015723 NM_015881 NM_016059 NM_016084 NM_016173 NM_016235 NM_016338 NM_016340 NM_016389 NM_016418 NM_016441 NM_016488 NM_016522 NM_016601 NM_016614 NM_016836 NM_016839 NM_016953 NM_017424 NM_017523 NM_017614 NM_017637 NM_017661 NM_017662 NM_017725 NM_017787 NM_017791 NM_017890 NM_018008 NM_018028 NM_018031 NM_018040 NM_018054 NM_018059 NM_018179 NM_018240 NM_018243 NM_018270 NM_018340 NM_018363 NM_018399 NM_018518 NM_018660 NM_018702 NM_018942 NM_018943 NM_018950 NM_018982 NM_018999 NM_019007 NM_019018 NM_019021 NM_019116 NM_019613 NM_019886 NM_020141 NM_020143 NM_020163 NM_020215 NM_020244 NM_020311 NM_020390 NM_020403 NM_020431 NM_020463 NM_020552 NM_020553 NM_020652 NM_020657 NM_020715 NM_020728 NM_020768 NM_020782 NM_020813 NM_020893 NM_020894 NM_020993 NM_021014 NM_021015 NM_021036 NM_021064 NM_021215 NM_021240 NM_021249 NM_021630 NM_021912 NM_021945 NM_021946 NM_021952 NM_021958 NM_021959 NM_021977 NM_022102 NM_022132 NM_022342 NM_022354 NM_022455 NM_022468 NM_022469 NM_022718 NM_022736 NM_022763 NM_022778 NM_022872 NM_022873 NM_022905 NM_023028 NM_023927 NM_024025 NM_024043 NM_024061 NM_024322 NM_024492 NM_024554 NM_024557 NM_024558 NM_024610 NM_024735 NM_024818 NM_024866 NM_024881 NM_024915 NM_024939 NM_024952 NM_024954 NM_025040 NM_025059 NM_025061 NM_025090 NM_025104 NM_025134 NM_030625 NM_030636 NM_030650 NM_030799 NM_030806 NM_030907 NM_030928 NM_030966 NM_031265 NM_031468 NM_031469 NM_031886 NM_031891 NM_032134 NM_032189 NM_032251 NM_032262 NM_032268 NM_032281 NM_032314 NM_032431 NM_032445 NM_032515 NM_032603 NM_032687 NM_032797 NM_032845 NM_032849 NM_033051 NM_033083 NM_033087 NM_033160 NM_033161 NM_033199 NM_033229 NM_033326 NM_052839 NM_052865 NM_052898 NM_052904 NM_052995 NM_054013 NM_057090 NM_057091 NM_057160 NM_057174 NM_058172 NM_058246 NM_078625 NM_080491 NM_080605 NM_080723 NM_130446 NM_130469 NM_130807 NM_130848 NM_133274 NM_133468 NM_134422 NM_134423 NM_134424 NM_134444 NM_138342 NM_138775 NM_138969 NM_138970 NM_139021 NM_139182 NM_139245 NM_144586 NM_144621 NM_144664 NM_144947 NM_145035 NM_145115 NM_145301 NM_145305 NM_145805 NM_148171 NM_152219 NM_152233 NM_152235 NM_152287 NM_152376 NM_152451 NM_152564 NM_152684 NM_152719 NM_152739 NM_152757 NM_152760 NM_152774 NM_152840 NM_152842 NM_152879 NM_152906 NM_152910 NM_153010 NM_153020 NM_153032 NM_153453 NM_153462 NM_153463 NM_153487 NM_153703 NM_153837 NM_170781 NM_172219 NM_172220 NM_172230 NM_172346 NM_172349 NM_172387 NM_172388 NM_172389 NM_173075 NM_173081 NM_173358 NM_173460 NM_173570 NM_173675 NM_173681 NM_173829 NM_174909 NM_174961 NM_175698 NM_175723 NM_175729 NM_175854 NM_175871 NM_175884 NM_175898 NM_175901 NM_175931 NM_177405 NM_177532 NM_177553 NM_177924 NM_177972 NM_178009 NM_178135 NM_178426 NM_178427 NM_178428 NM_178470 NM_178536 NM_178562 NM_178566 NM_178812 NM_180991 NM_181334 NM_181335 NM_181481 NM_181482 NM_181483 NM_181571 NM_181784 NM_181826 NM_181827 NM_181828 NM_181829 NM_181830 NM_181832 NM_181833 NM_181834 NM_181835 NM_182492 NM_182507 NM_182530 NM_182531 NM_182605 NM_182616 NM_182645 NM_182717 NM_182718 NM_182719 NM_182720 NM_182721 NM_182722 NM_182723 NM_182724 NM_182725 NM_182751 NM_182757 NM_182769 NM_182770 NM_182771 NM_182772 NM_182850 NM_182853 NM_182898 NM_182899 NM_182966 NM_183011 NM_183012 NM_183013 NM_183060 NM_194295 NM_194301 NM_197973 NM_198042 NM_198157 NM_198158 NM_198159 NM_198177 NM_198178 NM_198315 NM_198320 NM_198329 NM_198334 NM_198335 NM_198391 NM_198404 NM_198462 NM_198532 NM_198555 NM_198562 NM_198563 NM_198580 NM_198682 NM_198835 NM_198859 NM_198904 NM_198990 NM_199045 NM_199139 NM_199141 NM_199168 NM_199245 NM_199344 NM_201431 NM_201520 NM_201613 NM_203329 NM_203330 NM_203331 NM_203341 NM_203342 NM_203343 NM_203381 NM_203391 NM_203481 NM_203487 NM_205855 NM_206594 NM_206595 NM_206833 NM_206877 NM_206887 NM_207032 NM_207033 NM_207034 NM_207112 NM_207370 NM_207429 NM_207468 NM_207577 NM_212467 NM_213566 XM_027236 XM_032278 XM_032996 XM_047355 XM_048898 XM_051081 XM_056455 XM_059689 XM_071712 XM_170659 XM_171054 XM_209607 XM_210856 XM_211305 XM_290842 XM_370729 XM_370838 XM_370878 XM_371254 XM_371302 XM_371304 XM_371354 XM_371486 XM_371761 XM_371770 XM_372716 XM_373431 XM_373506 XM_373518 XM_373606 XM_373631 XM_373737 XM_373765 XM_373844 XM_373883 XM_374112 XM_374226 XM_374741 XM_375669 XM_376049 XM_376241 XM_376303 XM_376433 XM_376444 XM_376463 XM_376586 XM_376841 XM_376846 XM_377742 XM_378553 XM_378625 XM_378642 XM_378692 XM_378708 XM_378750 XM_378786 XM_378787 XM_378908 XM_379044 XM_379146 XM_379417 XM_379456 XM_379668 XM_379798 XM_495950 XM_496134 XM_496156 XM_496328 XM_496690 XM_496692 XM_497036 XM_498424 XM_498429 XM_498451 XM_498567 XM_498646 XM_498869 XM_498878 XM_498919 XM_499038 XM_499048 XM_499051 XM_499130 XM_499142 XM_499495 XM_499501 XM_499554 XM_499558 XM_499581 XR_000190 XR_000194 XR_000259 XR_000268 XR_000275	Genes with multiple seed matches: NM_000476 NM_001001418 NM_001006634 NM_001011666 NM_001013726 NM_001017915 NM_001451 NM_001650 NM_004028 NM_004561 NM_004904 NM_005541 NM_005578 NM_006777 NM_007030 NM_014665 NM_018054 NM_020552 NM_020553 NM_021945 NM_021959 NM_031265 NM_080723 NM_144621 NM_170781 NM_172346 NM_178566 NM_182898 NM_182899 XM_210856 XM_376049 XM_497036

For Details about the algorithm please see
"3' UTR seed matches, but not overall identity, are associated with RNAi off-targets" ,Nature Methods - 3, 199 - 204 (2006)

VIRsiRNAdb

Database of Viral siRNA / shRNA